Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000677.1

Orthogroup ID

OG0007833

Physical Location & Seq

Genomic Coordinates Reverse (-)

190812 .. 191315

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000677.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atggccggagcaacccgaaaacccaaaccacacaccaccaccatgaggtcatcccactacctgtccccgccaacaccactccaccttctcatccctcttcccctcaccgtcgtctccgccaagtctcagccacaaccaggccaagacttgggaggcttaggccgttcatttctcacaaaactcaaacccaaccccaaacccaccaatattaccgccgtcacaaaacagcagaagcagaaacaagaggacagcagtcgccagataagcgggtcagaagtgcttttcgctatgcagaaagcagctgccaagaaacgaaaagagactcggaagaagaaaacgaagacgagtgccgaggggttatcgtctgtgagcaggcacagggaagaggaggaggatgaagtggactatagcaaagtgaggcccttgtgtttgaagagtgattggggaagaagattggatgagttggaaatgcgtcttcaggagctttcttccaagaccatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.71

Weight (kDa)

10.07

Isoelectric Point (pI)

60.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46735
malus_domestica	MD09G1241400.v1.1 MD09G1276400.v1.1 MD11G1232300.v1.1 MD17G1036400.v1.1
prunus_persica	Prupe.2G196100_v2.0.a1
pyrus_communis	pycom01g11150 pycom02g08750 pycom03g19450 pycom07g15430 pycom11g00100 pycom14g16070 pycom15g05630
rosa_chinensis	RchiOBHm_Chr1g0360901
rosa_laevigata	RLG00000027771
rosa_multiflora	Rmu_sc0000677.1_g000033
rosa_roxburghii	Rroxscaffold_4G00295720
rosa_rugosa	Rorug01G0283200
rosa_samantha	Rh1AG294800 Rh1BG259600 Rh1CG277000 Rh1DG289600
rosa_wichuraiana	Rw1G026050 Rw1G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	148
AciI	CCGC	4 cut(s)	68, 117, 213, 267
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	461
AfiI	CCNNNNNNNGG	3 cut(s)	45, 137, 148
AgsI	TTSAA	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	2 cut(s)	302, 484
AluI	AGCT	2 cut(s)	302, 484
Alw26I	GTCTC	3 cut(s)	118, 129, 314
AoxI	GGCC	4 cut(s)	3, 139, 160, 419
ApeKI	GCWGC	2 cut(s)	299, 302
AspS9I	GGNCC	1 cut(s)	420
AsuHPI	GGTGA	1 cut(s)	97
BbsI	GAAGAC	2 cut(s)	347, 467
BbvI	GCAGC	2 cut(s)	289, 311
BceAI	ACGGC	2 cut(s)	147, 200
BciT130I	CCWGG	1 cut(s)	138
BcoDI	GTCTC	3 cut(s)	118, 129, 314
BfmI	CTRYAG	1 cut(s)	406
BisI	GCNGC	2 cut(s)	300, 303
BlsI	GCNGC	2 cut(s)	301, 304
Bme1390I	CCNGG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	138
BoxI	GACNNNNGTC	1 cut(s)	252
BpiI	GAAGAC	2 cut(s)	347, 467
Bpu10I	CCTNAGC	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 137, 148
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	4 cut(s)	50, 90, 400, 463
BseLI	CCNNNNNNNGG	3 cut(s)	45, 137, 148
BseMII	CTCAG	1 cut(s)	140
BseRI	GAGGAG	2 cut(s)	401, 404
BseXI	GCAGC	2 cut(s)	289, 311
BshFI	GGCC	4 cut(s)	5, 141, 162, 421
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	3 cut(s)	45, 137, 148
BsmAI	GTCTC	3 cut(s)	118, 129, 314
BsmBI	CGTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	4 cut(s)	5, 141, 162, 421
BspACI	CCGC	4 cut(s)	68, 117, 213, 267
BspANI	GGCC	4 cut(s)	5, 141, 162, 421
BspCNI	CTCAG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	3 cut(s)	102, 378, 428
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	2 cut(s)	126, 157
BstF5I	GGATG	4 cut(s)	50, 90, 400, 463
BstMAI	GTCTC	3 cut(s)	118, 129, 314
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	1 cut(s)	138
BstPAI	GACNNNNGTC	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	406
BstV1I	GCAGC	2 cut(s)	289, 311
BstV2I	GAAGAC	2 cut(s)	347, 467
BsuRI	GGCC	4 cut(s)	5, 141, 162, 421
BtsCI	GGATG	4 cut(s)	50, 90, 400, 463
Cac8I	GCNNGC	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	420
CseI	GACGC	1 cut(s)	461
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	8 cut(s)	5, 130, 141, 156, 162, 302, 421, 484
CviKI_1	RGCY	8 cut(s)	5, 130, 141, 156, 162, 302, 421, 484
DdeI	CTNAG	2 cut(s)	126, 157
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	102, 378, 428
EarI	CTCTTC	3 cut(s)	102, 378, 428
EciI	GGCGGA	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	461
EcoO109I	RGGNCCY	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	44, 290, 408
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	1 cut(s)	42
FauI	CCCGC	2 cut(s)	75, 260
Fnu4HI	GCNGC	2 cut(s)	300, 303
FokI	GGATG	4 cut(s)	37, 77, 407, 470
Fsp4HI	GCNGC	2 cut(s)	300, 303
GluI	GCNGC	2 cut(s)	300, 303
HaeIII	GGCC	4 cut(s)	5, 141, 162, 421
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	1 cut(s)	461
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	2 cut(s)	274, 327
Hpy188III	TCNNGA	1 cut(s)	479
Hpy8I	GTNNAC	1 cut(s)	403
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	2 cut(s)	126, 157
Hsp92II	CATG	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	8, 481
LpnPI	CCDG	8 cut(s)	19, 74, 123, 150, 272, 358, 364, 464
Lsp1109I	GCAGC	2 cut(s)	289, 311
MaeIII	GTNAC	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	316
MmeI	TCCRAC	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	264
NlaIII	CATG	1 cut(s)	46
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	301, 304
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PshAI	GACNNNNGTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	420
PvuII	CAGCTG	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	41
SatI	GCNGC	2 cut(s)	300, 303
Sau96I	GGNCC	1 cut(s)	420
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	5 cut(s)	50, 63, 87, 304, 486
SfcI	CTRYAG	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	41
SsiI	CCGC	4 cut(s)	68, 117, 213, 267
SspI	AATATT	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	299, 302
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	156, 411
Van91I	CCANNNNNTGG	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.