Rroxscaffold_4G00295720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007833
Physical Location & Seq
Reverse (-)
15754107 .. 15755013
907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00295720.1

Sequence Viewer

Length: 492 bp
ATGTATGTGGCCGGAGCAACCCGAAAACCCAAACCACACACCACCACCATGTGGTCATCCCACTACCTGTCCCCACCAACACCCCTCCACCCTCTCATCCCTCTTCCCCTCACCGTCGTCTCCGCCAAGTCTCAGCCACAACCAGGCCAGGACTTGGGAGGGAAACTCAAACCCAACCGCAAACCCACCAATATTACCGCCGTCCCAAAACAGCAGAAGCAGAAGCAAGAGGACAGCAGTCGCCAGATAAGCGGGTCAGAAGTGCTTTTCGCTATGCAGAAAGCAGCTGCCAAGAAACGAAAAGAGACTCGGAAGAAGAAAACGAAGACGAGTGCGGAGGGGTTATCGTCTGCGGGCAGGCACAGGGAAGAGGAGGAGGAGGGTGAAGTGGACTATACTAAAGTGAGGCCCTTGTGTTTGAAGAGTGATTGGGGAAGAAGATTGGATGAGTTGGAAATTCGTCTTCAGGAGCTTTCTTCCAAGACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.28

Weight (kDa)

9.96

Isoelectric Point (pI)

58.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 51, 154
AciI CCGC 6 cut(s) 123, 178, 198, 252, 335, 353
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 1 cut(s) 456
AcuI CTGAAG 1 cut(s) 449
AdeI CACNNNGTG 1 cut(s) 51
AfiI CCNNNNNNNGG 3 cut(s) 51, 143, 154
AgsI TTSAA 1 cut(s) 421
AjnI CCWGG 2 cut(s) 142, 147
AluBI AGCT 2 cut(s) 287, 472
AluI AGCT 2 cut(s) 287, 472
Alw26I GTCTC 3 cut(s) 124, 135, 299
AoxI GGCC 3 cut(s) 9, 145, 407
ApeKI GCWGC 2 cut(s) 284, 287
ApoI RAATTY 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 408
AsuHPI GGTGA 2 cut(s) 103, 395
BbsI GAAGAC 2 cut(s) 332, 455
BbvI GCAGC 2 cut(s) 274, 296
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 2 cut(s) 144, 149
BcoDI GTCTC 3 cut(s) 124, 135, 299
BisI GCNGC 2 cut(s) 285, 288
BlsI GCNGC 2 cut(s) 286, 289
Bme1390I CCNGG 2 cut(s) 144, 149
BmgT120I GGNCC 1 cut(s) 408
BmrFI CCNGG 2 cut(s) 144, 149
BoxI GACNNNNGTC 1 cut(s) 237
BpiI GAAGAC 2 cut(s) 332, 455
BplI GAGNNNNNCTC 2 cut(s) 150, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 143, 154
BseBI CCWGG 2 cut(s) 144, 149
BseGI GGATG 3 cut(s) 56, 96, 451
BseLI CCNNNNNNNGG 3 cut(s) 51, 143, 154
BseMII CTCAG 1 cut(s) 146
BseRI GAGGAG 3 cut(s) 386, 389, 392
BseXI GCAGC 2 cut(s) 274, 296
BshFI GGCC 3 cut(s) 11, 147, 409
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 2 cut(s) 55, 188
BslI CCNNNNNNNGG 3 cut(s) 51, 143, 154
BsmAI GTCTC 3 cut(s) 124, 135, 299
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 2 cut(s) 55, 188
BsnI GGCC 3 cut(s) 11, 147, 409
BspACI CCGC 6 cut(s) 123, 178, 198, 252, 335, 353
BspANI GGCC 3 cut(s) 11, 147, 409
BspCNI CTCAG 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 144, 149
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 3 cut(s) 108, 363, 416
BstC8I GCNNGC 2 cut(s) 355, 359
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 3 cut(s) 56, 96, 451
BstMAI GTCTC 3 cut(s) 124, 135, 299
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstNI CCWGG 2 cut(s) 144, 149
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 142, 147
BstV1I GCAGC 2 cut(s) 274, 296
BstV2I GAAGAC 2 cut(s) 332, 455
BsuRI GGCC 3 cut(s) 11, 147, 409
BtsCI GGATG 3 cut(s) 56, 96, 451
Cac8I GCNNGC 2 cut(s) 355, 359
Cfr13I GGNCC 1 cut(s) 408
CviAII CATG 1 cut(s) 49
CviJI RGCY 6 cut(s) 11, 136, 147, 287, 409, 472
CviKI_1 RGCY 6 cut(s) 11, 136, 147, 287, 409, 472
DdeI CTNAG 1 cut(s) 132
DraIII CACNNNGTG 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 3 cut(s) 108, 363, 416
EarI CTCTTC 3 cut(s) 108, 363, 416
EciI GGCGGA 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 408
EcoRII CCWGG 2 cut(s) 142, 147
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 1 cut(s) 52
FaiI YATR 4 cut(s) 6, 50, 275, 396
FaqI GGGAC 2 cut(s) 55, 188
FatI CATG 1 cut(s) 48
FauI CCCGC 2 cut(s) 245, 346
Fnu4HI GCNGC 2 cut(s) 285, 288
FokI GGATG 3 cut(s) 43, 83, 458
Fsp4HI GCNGC 2 cut(s) 285, 288
GluI GCNGC 2 cut(s) 285, 288
HaeIII GGCC 3 cut(s) 11, 147, 409
HapII CCGG 1 cut(s) 12
Hin1II CATG 1 cut(s) 52
HinfI GANTC 1 cut(s) 307
HpaII CCGG 1 cut(s) 12
HphI GGTGA 2 cut(s) 103, 395
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 2 cut(s) 259, 312
Hpy188III TCNNGA 1 cut(s) 467
Hpy8I GTNNAC 1 cut(s) 391
Hpy99I CGWCG 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 1 cut(s) 52
LmnI GCTCC 2 cut(s) 14, 469
Lsp1109I GCAGC 2 cut(s) 274, 296
MluCI AATT 1 cut(s) 456
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 2 cut(s) 144, 149
MvaI CCWGG 2 cut(s) 144, 149
MwoI GCNNNNNNNGC 1 cut(s) 249
NlaIII CATG 1 cut(s) 52
PflMI CCANNNNNTGG 2 cut(s) 51, 154
PkrI GCNGC 2 cut(s) 286, 289
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PshAI GACNNNNGTC 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 142, 147
PspGI CCWGG 2 cut(s) 142, 147
PspPI GGNCC 1 cut(s) 408
PvuII CAGCTG 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 2 cut(s) 285, 288
Sau96I GGNCC 1 cut(s) 408
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 144, 149
SetI ASST 3 cut(s) 69, 289, 474
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 456
SsiI CCGC 6 cut(s) 123, 178, 198, 252, 335, 353
SspI AATATT 1 cut(s) 193
StyD4I CCNGG 2 cut(s) 142, 147
TaaI ACNGT 1 cut(s) 115
TasI AATT 1 cut(s) 456
TseI GCWGC 2 cut(s) 284, 287
Van91I CCANNNNNTGG 2 cut(s) 51, 154
XapI RAATTY 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.