Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007833

Physical Location & Seq

Genomic Coordinates Forward (+)

20037887 .. 20039202

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTTAATATATACTTATATTTTTAGGGGCCGCTTCACAAGTGCTATCCTGCAAACACTTCTTCCAGCATCAACTTATTATCACAAGACCAAAGTTGCATTCCATGAGGTACCGTTTGGTACGTGGGATGGGACGGAACAGAGTGGGACAAGGCGTTCCGTCCCACGTTTGGTACGCCTAAAATGGGTGGAACGAGCTGTTCCACGGGACGAATTTTGGGTGAATTTTTGTTCCACCTCACCCCCCTGGAACGACTCGTTCCACATCCGTGGAACACAAAATTATAACCTCTCCGTCTCCTTCTTCTTCCTCCTTGTTTCCATCCGAGGGCATCTTTGCTCCTGCTCCATTCCGTTCCGTCCTGTCCCGTCCTGTCCCGTCTCATTCCGTTCCGTCCCGTCCTGTCTGCATACCAAACGATACCTGACTGAACACTCAAGCACCACAATCTTTCATCTATGTGAGCTTTGGGAGCATTGCTACCTTGAATGGAAGGGGCCAAATTGTGAAATGGACTCCACAAAAGAAAAATTGTTGGCACATCAAGCCGTTGGAGTGTTTTGGACTCACAATGGTTGGAACTCTACATTGGAGAGTATTTGTGAGGGGATTCCTATGATTTGCATGCCATGTCTAAGTGATCAAATGGCAAATGCAAGATATGTGAGTCATGTGTGGAAAGTTGGGTTGCAGTTGGAGCATGGGGTGGAAAGAGGGGAGATTGAAAGAACATTTAGAAAAATAATGGCGGAAAAAGATGGGGAGGAGATTAGAGATAGAATCTTAATGCTAAGGGAAAAGGCAAAAATTTGCATCAAACAAGGTGGTTCTTCATACCAATCCTTGGATGGATTTATTAAATACATTTTATCCCAATTTGCTATTCAATCTCAAGGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

301

Amino Acids

34.69

Weight (kDa)

8.69

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46735
malus_domestica	MD09G1241400.v1.1 MD09G1276400.v1.1 MD11G1232300.v1.1 MD17G1036400.v1.1
prunus_persica	Prupe.2G196100_v2.0.a1
pyrus_communis	pycom01g11150 pycom02g08750 pycom03g19450 pycom07g15430 pycom11g00100 pycom14g16070 pycom15g05630
rosa_chinensis	RchiOBHm_Chr1g0360901
rosa_laevigata	RLG00000027771
rosa_multiflora	Rmu_sc0000677.1_g000033
rosa_roxburghii	Rroxscaffold_4G00295720
rosa_rugosa	Rorug01G0283200
rosa_samantha	Rh1AG294800 Rh1BG259600 Rh1CG277000 Rh1DG289600
rosa_wichuraiana	Rw1G026050 Rw1G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
Acc65I	GGTACC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	109
AccB7I	CCANNNNNTGG	1 cut(s)	844
AciI	CCGC	2 cut(s)	31, 749
AcsI	RAATTY	3 cut(s)	212, 223, 807
AfaI	GTAC	3 cut(s)	111, 121, 174
AfiI	CCNNNNNNNGG	4 cut(s)	169, 184, 327, 844
AgsI	TTSAA	3 cut(s)	488, 725, 887
AjnI	CCWGG	1 cut(s)	245
AjuI	GAANNNNNNNTTGG	6 cut(s)	83, 115, 572, 604, 867, 899
AleI	CACNNNNGTG	1 cut(s)	267
AloI	GAACNNNNNNTCC	2 cut(s)	139, 171
AluBI	AGCT	2 cut(s)	197, 466
AluI	AGCT	2 cut(s)	197, 466
Alw26I	GTCTC	2 cut(s)	301, 385
AoxI	GGCC	2 cut(s)	28, 497
ApoI	RAATTY	3 cut(s)	212, 223, 807
Asp718I	GGTACC	1 cut(s)	109
AspS9I	GGNCC	2 cut(s)	28, 497
AsuHPI	GGTGA	2 cut(s)	231, 232
BanI	GGYRCC	1 cut(s)	109
BccI	CCATC	4 cut(s)	122, 329, 752, 842
BceAI	ACGGC	1 cut(s)	533
BciT130I	CCWGG	1 cut(s)	247
BclI	TGATCA	1 cut(s)	640
BcoDI	GTCTC	2 cut(s)	301, 385
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	247
BmgT120I	GGNCC	2 cut(s)	28, 497
BmiI	GGNNCC	3 cut(s)	29, 111, 498
BmrFI	CCNGG	1 cut(s)	247
BmsI	GCATC	3 cut(s)	77, 340, 822
Bpu10I	CCTNAGC	1 cut(s)	791
BpuEI	CTTGAG	2 cut(s)	421, 876
BsaAI	YACGTR	1 cut(s)	123
BsaJI	CCNNGG	5 cut(s)	203, 245, 268, 325, 843
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 184, 327, 844
Bse3DI	GCAATG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	5 cut(s)	203, 245, 268, 325, 843
BseGI	GGATG	4 cut(s)	133, 264, 321, 853
BseLI	CCNNNNNNNGG	4 cut(s)	169, 184, 327, 844
BseMI	GCAATG	1 cut(s)	475
BseRI	GAGGAG	1 cut(s)	779
BshFI	GGCC	2 cut(s)	30, 499
BshNI	GGYRCC	1 cut(s)	109
BslFI	GGGAC	7 cut(s)	145, 146, 160, 221, 350, 360, 380
BslI	CCNNNNNNNGG	4 cut(s)	169, 184, 327, 844
BsmAI	GTCTC	2 cut(s)	301, 385
BsmBI	CGTCTC	2 cut(s)	301, 385
BsmFI	GGGAC	7 cut(s)	145, 146, 160, 221, 350, 360, 380
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	30, 499
Bsp143I	GATC	1 cut(s)	640
BspACI	CCGC	2 cut(s)	31, 749
BspANI	GGCC	2 cut(s)	30, 499
BspLI	GGNNCC	3 cut(s)	29, 111, 498
BspT107I	GGYRCC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	475
BssECI	CCNNGG	5 cut(s)	203, 245, 268, 325, 843
BssMI	GATC	1 cut(s)	640
BssT1I	CCWWGG	1 cut(s)	843
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	626
BstDEI	CTNAG	2 cut(s)	635, 791
BstDSI	CCRYGG	2 cut(s)	203, 268
BstF5I	GGATG	4 cut(s)	133, 264, 321, 853
BstKTI	GATC	1 cut(s)	643
BstMAI	GTCTC	2 cut(s)	301, 385
BstMBI	GATC	1 cut(s)	640
BstMWI	GCNNNNNNNGC	3 cut(s)	472, 545, 697
BstNI	CCWGG	1 cut(s)	247
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	1 cut(s)	245
BstXI	CCANNNNNNTGG	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	30, 499
BtgI	CCRYGG	2 cut(s)	203, 268
BtsCI	GGATG	4 cut(s)	133, 264, 321, 853
Cac8I	GCNNGC	1 cut(s)	626
Cfr13I	GGNCC	2 cut(s)	28, 497
Csp6I	GTAC	3 cut(s)	110, 120, 173
CspCI	CAANNNNNGTGG	2 cut(s)	805, 840
CviAII	CATG	5 cut(s)	104, 625, 630, 671, 701
CviJI	RGCY	5 cut(s)	30, 197, 466, 499, 548
CviKI_1	RGCY	5 cut(s)	30, 197, 466, 499, 548
CviQI	GTAC	3 cut(s)	110, 120, 173
DdeI	CTNAG	2 cut(s)	635, 791
DpnI	GATC	1 cut(s)	642
DpnII	GATC	1 cut(s)	640
EciI	GGCGGA	1 cut(s)	764
Eco130I	CCWWGG	1 cut(s)	843
EcoRII	CCWGG	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	843
ErhI	CCWWGG	1 cut(s)	843
Esp3I	CGTCTC	2 cut(s)	301, 385
FaeI	CATG	5 cut(s)	107, 628, 633, 674, 704
FaqI	GGGAC	7 cut(s)	145, 146, 160, 221, 350, 360, 380
FatI	CATG	5 cut(s)	103, 624, 629, 670, 700
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	4 cut(s)	140, 251, 308, 860
Fsp4HI	GCNGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	30, 499
Hin1II	CATG	5 cut(s)	107, 628, 633, 674, 704
HinfI	GANTC	6 cut(s)	254, 515, 565, 610, 667, 780
HphI	GGTGA	2 cut(s)	231, 232
Hpy188I	TCNGA	1 cut(s)	326
HpyAV	CCTTC	2 cut(s)	310, 487
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4IV	ACGT	2 cut(s)	122, 166
HpyCH4V	TGCA	7 cut(s)	52, 98, 409, 624, 656, 691, 813
HpyF10VI	GCNNNNNNNGC	3 cut(s)	472, 545, 697
HpyF3I	CTNAG	2 cut(s)	635, 791
HpySE526I	ACGT	2 cut(s)	122, 166
Hsp92II	CATG	5 cut(s)	107, 628, 633, 674, 704
KpnI	GGTACC	1 cut(s)	113
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	1 cut(s)	640
LmnI	GCTCC	4 cut(s)	344, 350, 472, 697
LpnPI	CCDG	9 cut(s)	62, 78, 232, 259, 355, 375, 385, 415, 437
LweI	GCATC	3 cut(s)	77, 340, 822
MaeII	ACGT	2 cut(s)	122, 166
MalI	GATC	1 cut(s)	642
MboI	GATC	1 cut(s)	640
MboII	GAAGA	4 cut(s)	53, 295, 298, 822
MluCI	AATT	7 cut(s)	212, 223, 280, 502, 530, 807, 875
MlyI	GAGTC	4 cut(s)	248, 509, 559, 676
MmeI	TCCRAC	3 cut(s)	532, 557, 675
MnlI	CCTC	8 cut(s)	100, 247, 299, 320, 320, 598, 707, 757
MseI	TTAA	3 cut(s)	5, 785, 858
MslI	CAYNNNNRTG	2 cut(s)	267, 459
MspR9I	CCNGG	1 cut(s)	247
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	3 cut(s)	472, 545, 697
NdeII	GATC	1 cut(s)	640
NlaIII	CATG	5 cut(s)	107, 628, 633, 674, 704
NlaIV	GGNNCC	3 cut(s)	29, 111, 498
NspI	RCATGY	1 cut(s)	628
OliI	CACNNNNGTG	1 cut(s)	267
PaeI	GCATGC	1 cut(s)	628
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	610, 780
PflMI	CCANNNNNTGG	1 cut(s)	844
PkrI	GCNGC	1 cut(s)	32
PleI	GAGTC	4 cut(s)	248, 509, 559, 675
PpsI	GAGTC	4 cut(s)	248, 509, 559, 675
Ppu21I	YACGTR	1 cut(s)	123
PsiI	TTATAA	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	3 cut(s)	29, 111, 498
PspPI	GGNCC	2 cut(s)	28, 497
RsaI	GTAC	3 cut(s)	111, 121, 174
RsaNI	GTAC	3 cut(s)	110, 120, 173
RseI	CAYNNNNRTG	2 cut(s)	267, 459
SaqAI	TTAA	3 cut(s)	5, 785, 858
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	1 cut(s)	640
Sau96I	GGNCC	2 cut(s)	28, 497
SchI	GAGTC	4 cut(s)	248, 509, 559, 676
ScrFI	CCNGG	1 cut(s)	247
SfaNI	GCATC	3 cut(s)	77, 340, 822
SmiMI	CAYNNNNRTG	2 cut(s)	267, 459
SmlI	CTYRAG	2 cut(s)	436, 891
SmoI	CTYRAG	2 cut(s)	436, 891
SphI	GCATGC	1 cut(s)	628
Sse9I	AATT	7 cut(s)	212, 223, 280, 502, 530, 807, 875
SsiI	CCGC	2 cut(s)	31, 749
StyD4I	CCNGG	1 cut(s)	245
StyI	CCWWGG	1 cut(s)	843
TaaI	ACNGT	1 cut(s)	114
TaiI	ACGT	2 cut(s)	125, 169
TasI	AATT	7 cut(s)	212, 223, 280, 502, 530, 807, 875
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	2 cut(s)	610, 780
Tru1I	TTAA	3 cut(s)	5, 785, 858
Tru9I	TTAA	3 cut(s)	5, 785, 858
TspDTI	ATGAA	2 cut(s)	443, 822
TspGWI	ACGGA	8 cut(s)	148, 149, 257, 283, 342, 347, 377, 382
Van91I	CCANNNNNTGG	1 cut(s)	844
XapI	RAATTY	3 cut(s)	212, 223, 807
XceI	RCATGY	1 cut(s)	628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.