RLG00000027771

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007833
Physical Location & Seq
Reverse (-)
15009338 .. 15009787
450 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027771

Sequence Viewer

Length: 450 bp
ATGTGGTCATCCCACTACATGTCCCCGCCAACACCACTCCACCCTCTCATCCCTCTTCCACTCACCGTCGTCTCCGCCAAGTCTCAGCCACAACCAGGCCAAGACTTGGGAGGCTTAGGCCGTTCATTTCTCACAAAACTGAAACCCAACCCCAAACCCACCAATATTACCGCCCAGAAGCAGAAACAAGAACAAAGCAGTCGCCAGATAAGCGGGTCAGAAGTGCTTTTCGCTATGCAGAAAGCAGCTGCCAAGAAACGAAAAGAGACTCGGAAGAAGAAAACGAAGACGAGTGCGGAGGGGTTATCGTCTGCAGGCAGGCACAGGGAAGAGGAGGAGGATGAAGTGGACTATAGCAAAGTGAGGCCCTTGTGTTTGAAGAGTGATTGGGGAAGAAGATTGGATGAGTTGGAAATGCGTCTTCAGGAGCTTTCTTCCAAGACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.77

Weight (kDa)

9.87

Isoelectric Point (pI)

68.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 106
AciI CCGC 5 cut(s) 26, 75, 171, 213, 296
AcuI CTGAAG 1 cut(s) 407
AfiI CCNNNNNNNGG 2 cut(s) 95, 106
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 1 cut(s) 379
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 2 cut(s) 248, 430
AluI AGCT 2 cut(s) 248, 430
Alw26I GTCTC 3 cut(s) 76, 87, 260
AoxI GGCC 3 cut(s) 97, 118, 365
ApeKI GCWGC 2 cut(s) 245, 248
AspS9I GGNCC 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 55
BbsI GAAGAC 2 cut(s) 293, 413
BbvI GCAGC 2 cut(s) 235, 257
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 3 cut(s) 76, 87, 260
BfmI CTRYAG 2 cut(s) 312, 352
BisI GCNGC 2 cut(s) 246, 249
BlsI GCNGC 2 cut(s) 247, 250
Bme1390I CCNGG 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 366
BmrFI CCNGG 1 cut(s) 96
BpiI GAAGAC 2 cut(s) 293, 413
Bpu10I CCTNAGC 1 cut(s) 115
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 106
BseBI CCWGG 1 cut(s) 96
BseGI GGATG 4 cut(s) 8, 48, 346, 409
BseLI CCNNNNNNNGG 2 cut(s) 95, 106
BseMII CTCAG 1 cut(s) 98
BseRI GAGGAG 2 cut(s) 347, 350
BseXI GCAGC 2 cut(s) 235, 257
BshFI GGCC 3 cut(s) 99, 120, 367
BslFI GGGAC 1 cut(s) 7
BslI CCNNNNNNNGG 2 cut(s) 95, 106
BsmAI GTCTC 3 cut(s) 76, 87, 260
BsmBI CGTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 7
BsnI GGCC 3 cut(s) 99, 120, 367
BspACI CCGC 5 cut(s) 26, 75, 171, 213, 296
BspANI GGCC 3 cut(s) 99, 120, 367
BspCNI CTCAG 1 cut(s) 97
BspMAI CTGCAG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 3 cut(s) 60, 324, 374
BstC8I GCNNGC 2 cut(s) 316, 320
BstDEI CTNAG 2 cut(s) 84, 115
BstF5I GGATG 4 cut(s) 8, 48, 346, 409
BstMAI GTCTC 3 cut(s) 76, 87, 260
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 2 cut(s) 312, 352
BstV1I GCAGC 2 cut(s) 235, 257
BstV2I GAAGAC 2 cut(s) 293, 413
BsuRI GGCC 3 cut(s) 99, 120, 367
BtsCI GGATG 4 cut(s) 8, 48, 346, 409
Cac8I GCNNGC 2 cut(s) 316, 320
Cfr13I GGNCC 1 cut(s) 366
CseI GACGC 1 cut(s) 407
CviAII CATG 1 cut(s) 19
CviJI RGCY 7 cut(s) 88, 99, 114, 120, 248, 367, 430
CviKI_1 RGCY 7 cut(s) 88, 99, 114, 120, 248, 367, 430
DdeI CTNAG 2 cut(s) 84, 115
Eam1104I CTCTTC 3 cut(s) 60, 324, 374
EarI CTCTTC 3 cut(s) 60, 324, 374
EciI GGCGGA 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 94
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 1 cut(s) 22
FaiI YATR 3 cut(s) 20, 236, 354
FaqI GGGAC 1 cut(s) 7
FatI CATG 1 cut(s) 18
FauI CCCGC 2 cut(s) 33, 206
Fnu4HI GCNGC 2 cut(s) 246, 249
FokI GGATG 3 cut(s) 35, 353, 416
Fsp4HI GCNGC 2 cut(s) 246, 249
GluI GCNGC 2 cut(s) 246, 249
HaeIII GGCC 3 cut(s) 99, 120, 367
HgaI GACGC 1 cut(s) 407
Hin1II CATG 1 cut(s) 22
HinfI GANTC 1 cut(s) 268
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 2 cut(s) 220, 273
Hpy188III TCNNGA 1 cut(s) 425
Hpy8I GTNNAC 1 cut(s) 349
Hpy99I CGWCG 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 238, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 2 cut(s) 84, 115
Hsp92II CATG 1 cut(s) 22
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 8 cut(s) 81, 108, 188, 218, 300, 304, 310, 410
Lsp1109I GCAGC 2 cut(s) 235, 257
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 8 cut(s) 54, 63, 104, 292, 325, 328, 331, 357
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 210
NlaIII CATG 1 cut(s) 22
NspI RCATGY 1 cut(s) 22
PciI ACATGT 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 106
PkrI GCNGC 2 cut(s) 247, 250
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PscI ACATGT 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspPI GGNCC 1 cut(s) 366
PstI CTGCAG 1 cut(s) 316
PvuII CAGCTG 1 cut(s) 248
SatI GCNGC 2 cut(s) 246, 249
Sau96I GGNCC 1 cut(s) 366
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 96
SetI ASST 2 cut(s) 250, 432
SfcI CTRYAG 2 cut(s) 312, 352
SsiI CCGC 5 cut(s) 26, 75, 171, 213, 296
SspI AATATT 1 cut(s) 166
StyD4I CCNGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 67
TseI GCWGC 2 cut(s) 245, 248
TspDTI ATGAA 2 cut(s) 114, 357
Van91I CCANNNNNTGG 1 cut(s) 106
XceI RCATGY 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.