AT2G47890

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010143
Physical Location & Seq
Forward (+)
19607996 .. 19610287
2292 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47890.3

Sequence Viewer

Length: 999 bp
ATGGAAGCAGAAGAAGGTCATCAGCGTGACCGCCTCTGCGACTATTGCGACTCCTCCGTGGCTCTTGTCTACTGCAAAGCTGACTCCGCCAAGCTCTGCCTCGCCTGCGACAAGCAAGTCCACGTCGCCAACCAACTCTTCGCCAAACACTTCAGGTCACTTCTCTGCGACTCCTGCAACGAATCTCCCTCTTCCCTTTTCTGCGAGACTGAAAGGTCTGTTCTTTGCCAGAACTGCGACTGGCAACACCACACCGCCTCTTCCTCCCTTCATAGCCGCAGACCCTTTGAAGGATTTACCGGCTGTCCCTCCGTGCCTGAGTTGCTGGCCATCGTTGGCCTCGATGACCTCACTCTCGATTCCGGATTGCTTTGGGAGTCACCTGAGATCGTTAGCCTCAACGACCTTATTGTTTCGGGCGGGTCGGGTACTCATAACTTCCGGGCCACGGATGTTCCTCCTCTGCCTAAGAATCGTCACGCCACCTGCGGGAAATACAAAGATGAGATGATCCGACAGCTCCGTGGACTATCCAGATCTGAGCCTGGTTGTCTGAAATTTGAAACCCCAGATGCTGAGATCGATGCCGGGTTCCAATTCCTAGCGCCGGATTTGTTTTCTACATGCGAGCTGGAGAGTGGACTGAAATGGTTCGATCAGCAAGATCATGAGGACTTTCCATATTGCTCTCTGCTAAAGAACTTGTCGGAGTCAGATGAGAAACCTGAGAATGTAGACCGAGAGTCATCGGTGATGGTTCCCGTTTCCGGCTGCTTAAACCGATGTGAGGAAGAGACTGTGATGGTTCCGGTTATCACTAGTACAAGGTCGATGACACATGAGATCAACAGTCTTGAGAGGAACTCTGCTCTCTCTCGCTACAAAGAAAAGAAGAAGTCTCGAAGGTACGAGAAACACATCAGGTATGAATCACGCAAGGTTCGTGCAGAAAGCAGGACAAGAATCAGGGGACGTTTCGCCAAGGCAGCAGATCCATGA

Protein Analysis

332

Amino Acids

37.51

Weight (kDa)

5.72

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47890 AT2G47890 AT2G47890
fragaria_vesca FvH4_2g24910 FvH4_2g24910
malus_domestica MD03G1277600.v1.1 MD11G1299600.v1.1
prunus_persica Prupe.8G253900_v2.0.a1 Prupe.8G253900_v2.0.a1
pyrus_communis pycom03g22100 pycom11g26320
rosa_chinensis RchiOBHm_Chr6g0292831
rosa_laevigata RLG00000011989
rosa_multiflora Rmu_sc0000639.1_g000022
rosa_roxburghii Rroxscaffold_7G00174670
rosa_rugosa Rorug06G0230000
rosa_samantha Rh6AG343300 Rh6BG350500 Rh6CG357500 Rh6DG343400
rosa_wichuraiana Rw6G029940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 494
AasI GACNNNNNNGTC 2 cut(s) 116, 214
Acc36I ACCTGC 1 cut(s) 494
AccI GTMKAC 2 cut(s) 69, 735
AccIII TCCGGA 1 cut(s) 362
AciI CCGC 6 cut(s) 31, 87, 255, 277, 420, 489
AclWI GGATC 2 cut(s) 505, 986
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 1 cut(s) 557
AcuI CTGAAG 1 cut(s) 136
AfaI GTAC 3 cut(s) 430, 823, 908
AfiI CCNNNNNNNGG 6 cut(s) 290, 448, 489, 607, 767, 787
AgsI TTSAA 2 cut(s) 290, 563
AhdI GACNNNNNGTC 1 cut(s) 742
AhlI ACTAGT 1 cut(s) 818
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 1 cut(s) 544
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 4 cut(s) 80, 94, 520, 631
AluI AGCT 4 cut(s) 80, 94, 520, 631
Alw26I GTCTC 3 cut(s) 200, 788, 903
AlwI GGATC 2 cut(s) 505, 986
AlwNI CAGNNNCTG 1 cut(s) 575
Aor13HI TCCGGA 1 cut(s) 362
AoxI GGCC 3 cut(s) 327, 337, 444
ApeKI GCWGC 2 cut(s) 771, 986
ApoI RAATTY 1 cut(s) 557
Asp700I GAANNNNTTC 1 cut(s) 650
AspLEI GCGC 1 cut(s) 607
AspS9I GGNCC 1 cut(s) 444
AsuC2I CCSGG 2 cut(s) 443, 589
AsuHPI GGTGA 2 cut(s) 372, 763
BalI TGGCCA 1 cut(s) 329
BbvI GCAGC 1 cut(s) 758
BccI CCATC 3 cut(s) 338, 748, 796
BciT130I CCWGG 1 cut(s) 546
BcnI CCSGG 2 cut(s) 443, 589
BcoDI GTCTC 3 cut(s) 200, 788, 903
BcuI ACTAGT 1 cut(s) 818
BfaI CTAG 2 cut(s) 602, 819
BfoI RGCGCY 1 cut(s) 608
BfuAI ACCTGC 1 cut(s) 494
BglII AGATCT 1 cut(s) 536
BisI GCNGC 3 cut(s) 277, 772, 987
BlsI GCNGC 3 cut(s) 278, 773, 988
Bme1390I CCNGG 3 cut(s) 443, 546, 589
BmeRI GACNNNNNGTC 1 cut(s) 742
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 444
BmiI GGNNCC 3 cut(s) 593, 759, 807
BmrFI CCNGG 3 cut(s) 443, 546, 589
BmsI GCATC 2 cut(s) 562, 574
BplI GAGNNNNNCTC 2 cut(s) 848, 880
BpmI CTGGAG 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 875
BpuMI CCSGG 2 cut(s) 443, 589
Bsa29I ATCGAT 1 cut(s) 582
BsaJI CCNNGG 4 cut(s) 57, 447, 523, 981
BsaWI WCCGGW 2 cut(s) 362, 808
Bsc4I CCNNNNNNNGG 6 cut(s) 290, 448, 489, 607, 767, 787
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 245
BseAI TCCGGA 1 cut(s) 362
BseBI CCWGG 1 cut(s) 546
BseCI ATCGAT 1 cut(s) 582
BseDI CCNNGG 4 cut(s) 57, 447, 523, 981
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 6 cut(s) 290, 448, 489, 607, 767, 787
BseMII CTCAG 5 cut(s) 309, 375, 531, 567, 717
BseNI ACTGG 1 cut(s) 245
BseRI GAGGAG 2 cut(s) 43, 450
BseXI GCAGC 1 cut(s) 758
BsgI GTGCAG 1 cut(s) 966
BshFI GGCC 3 cut(s) 329, 339, 446
BshVI ATCGAT 1 cut(s) 582
BsiSI CCGG 7 cut(s) 300, 363, 442, 588, 608, 768, 809
BslFI GGGAC 2 cut(s) 291, 984
BslI CCNNNNNNNGG 6 cut(s) 290, 448, 489, 607, 767, 787
BsmAI GTCTC 3 cut(s) 200, 788, 903
BsmFI GGGAC 2 cut(s) 291, 984
BsnI GGCC 3 cut(s) 329, 339, 446
Bsp13I TCCGGA 1 cut(s) 362
Bsp143I GATC 8 cut(s) 387, 510, 536, 579, 655, 664, 843, 991
BspACI CCGC 6 cut(s) 31, 87, 255, 277, 420, 489
BspANI GGCC 3 cut(s) 329, 339, 446
BspCNI CTCAG 5 cut(s) 310, 376, 532, 568, 718
BspDI ATCGAT 1 cut(s) 582
BspEI TCCGGA 1 cut(s) 362
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 3 cut(s) 593, 759, 807
BspMI ACCTGC 1 cut(s) 494
BspPI GGATC 2 cut(s) 505, 986
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 1 cut(s) 245
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 4 cut(s) 57, 447, 523, 981
BssMI GATC 8 cut(s) 387, 510, 536, 579, 655, 664, 843, 991
BssT1I CCWWGG 1 cut(s) 981
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 2 cut(s) 799, 851
Bst6I CTCTTC 4 cut(s) 143, 196, 265, 786
BstC8I GCNNGC 3 cut(s) 106, 327, 629
BstDEI CTNAG 6 cut(s) 318, 384, 468, 540, 576, 726
BstDSI CCRYGG 3 cut(s) 57, 447, 523
BstF5I GGATG 1 cut(s) 457
BstH2I RGCGCY 1 cut(s) 608
BstHHI GCGC 1 cut(s) 607
BstKTI GATC 8 cut(s) 390, 513, 539, 582, 658, 667, 846, 994
BstMAI GTCTC 3 cut(s) 200, 788, 903
BstMBI GATC 8 cut(s) 387, 510, 536, 579, 655, 664, 843, 991
BstMWI GCNNNNNNNGC 7 cut(s) 45, 86, 105, 174, 234, 322, 986
BstNI CCWGG 1 cut(s) 546
BstNSI RCATGY 1 cut(s) 627
BstSCI CCNGG 3 cut(s) 441, 544, 587
BstV1I GCAGC 1 cut(s) 758
BstX2I RGATCY 2 cut(s) 536, 991
BstYI RGATCY 2 cut(s) 536, 991
Bsu15I ATCGAT 1 cut(s) 582
BsuRI GGCC 3 cut(s) 329, 339, 446
BsuTUI ATCGAT 1 cut(s) 582
BtgI CCRYGG 3 cut(s) 57, 447, 523
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 457
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 3 cut(s) 106, 327, 629
CaiI CAGNNNCTG 1 cut(s) 575
CciI TCATGA 1 cut(s) 667
CfoI GCGC 1 cut(s) 607
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 444
ClaI ATCGAT 1 cut(s) 582
Csp6I GTAC 3 cut(s) 429, 822, 907
CviAII CATG 4 cut(s) 624, 668, 839, 996
CviQI GTAC 3 cut(s) 429, 822, 907
DdeI CTNAG 6 cut(s) 318, 384, 468, 540, 576, 726
DpnI GATC 8 cut(s) 389, 512, 538, 581, 657, 666, 845, 993
DpnII GATC 8 cut(s) 387, 510, 536, 579, 655, 664, 843, 991
DrdI GACNNNNNNGTC 2 cut(s) 116, 214
DriI GACNNNNNGTC 1 cut(s) 742
DseDI GACNNNNNNGTC 2 cut(s) 116, 214
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 4 cut(s) 143, 196, 265, 786
Eam1105I GACNNNNNGTC 1 cut(s) 742
EarI CTCTTC 4 cut(s) 143, 196, 265, 786
EciI GGCGGA 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 981
Eco57I CTGAAG 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 981
ErhI CCWWGG 1 cut(s) 981
FaeI CATG 4 cut(s) 627, 671, 842, 999
FaiI YATR 8 cut(s) 273, 435, 625, 669, 682, 840, 927, 997
FaqI GGGAC 2 cut(s) 291, 984
FatI CATG 4 cut(s) 623, 667, 838, 995
FauI CCCGC 2 cut(s) 413, 482
FblI GTMKAC 2 cut(s) 69, 735
Fnu4HI GCNGC 3 cut(s) 277, 772, 987
FokI GGATG 1 cut(s) 464
Fsp4HI GCNGC 3 cut(s) 277, 772, 987
FspBI CTAG 2 cut(s) 602, 819
GlaI GCGC 1 cut(s) 606
GluI GCNGC 3 cut(s) 277, 772, 987
GsuI CTGGAG 1 cut(s) 653
HaeII RGCGCY 1 cut(s) 608
HaeIII GGCC 3 cut(s) 329, 339, 446
HapII CCGG 7 cut(s) 300, 363, 442, 588, 608, 768, 809
HhaI GCGC 1 cut(s) 607
Hin1II CATG 4 cut(s) 627, 671, 842, 999
Hin6I GCGC 1 cut(s) 605
HinP1I GCGC 1 cut(s) 605
HpaII CCGG 7 cut(s) 300, 363, 442, 588, 608, 768, 809
HphI GGTGA 2 cut(s) 372, 763
Hpy166II GTNNAC 5 cut(s) 70, 121, 527, 641, 736
Hpy188I TCNGA 5 cut(s) 515, 541, 555, 709, 715
Hpy188III TCNNGA 6 cut(s) 356, 363, 534, 668, 854, 900
Hpy8I GTNNAC 5 cut(s) 70, 121, 527, 641, 736
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 4 cut(s) 8, 278, 284, 897
HpyCH4III ACNGT 2 cut(s) 799, 851
HpyCH4IV ACGT 2 cut(s) 123, 973
HpyCH4V TGCA 3 cut(s) 75, 177, 947
HpyF10VI GCNNNNNNNGC 7 cut(s) 45, 86, 105, 174, 234, 322, 986
HpyF3I CTNAG 6 cut(s) 318, 384, 468, 540, 576, 726
HpySE526I ACGT 2 cut(s) 123, 973
Hsp92II CATG 4 cut(s) 627, 671, 842, 999
HspAI GCGC 1 cut(s) 605
Kpn2I TCCGGA 1 cut(s) 362
Kzo9I GATC 8 cut(s) 387, 510, 536, 579, 655, 664, 843, 991
LmnI GCTCC 1 cut(s) 525
Lsp1109I GCAGC 1 cut(s) 758
LweI GCATC 2 cut(s) 562, 574
MaeI CTAG 2 cut(s) 602, 819
MaeII ACGT 2 cut(s) 123, 973
MaeIII GTNAC 4 cut(s) 26, 156, 378, 476
MalI GATC 8 cut(s) 389, 512, 538, 581, 657, 666, 845, 993
MboI GATC 8 cut(s) 387, 510, 536, 579, 655, 664, 843, 991
MboII GAAGA 6 cut(s) 23, 130, 183, 252, 803, 904
MflI RGATCY 2 cut(s) 536, 991
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 2 cut(s) 557, 596
MluNI TGGCCA 1 cut(s) 329
MlyI GAGTC 6 cut(s) 44, 77, 164, 386, 719, 752
MmeI TCCRAC 2 cut(s) 538, 687
Mox20I TGGCCA 1 cut(s) 329
MroI TCCGGA 1 cut(s) 362
MroXI GAANNNNTTC 1 cut(s) 650
MscI TGGCCA 1 cut(s) 329
MseI TTAA 1 cut(s) 776
MslI CAYNNNNRTG 1 cut(s) 24
Msp20I TGGCCA 1 cut(s) 329
MspI CCGG 7 cut(s) 300, 363, 442, 588, 608, 768, 809
MspR9I CCNGG 3 cut(s) 443, 546, 589
MvaI CCWGG 1 cut(s) 546
MwoI GCNNNNNNNGC 7 cut(s) 45, 86, 105, 174, 234, 322, 986
NciI CCSGG 2 cut(s) 443, 589
NdeII GATC 8 cut(s) 387, 510, 536, 579, 655, 664, 843, 991
NlaIII CATG 4 cut(s) 627, 671, 842, 999
NlaIV GGNNCC 3 cut(s) 593, 759, 807
NmuCI GTSAC 4 cut(s) 26, 156, 378, 476
NspI RCATGY 1 cut(s) 627
PagI TCATGA 1 cut(s) 667
PaqCI CACCTGC 1 cut(s) 494
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 940
PdmI GAANNNNTTC 1 cut(s) 650
PfeI GAWTC 5 cut(s) 182, 359, 472, 929, 963
PkrI GCNGC 3 cut(s) 278, 773, 988
PleI GAGTC 6 cut(s) 44, 77, 164, 385, 718, 751
PpsI GAGTC 6 cut(s) 44, 77, 164, 385, 718, 751
Psp6I CCWGG 1 cut(s) 544
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 3 cut(s) 593, 759, 807
PspPI GGNCC 1 cut(s) 444
PstNI CAGNNNCTG 1 cut(s) 575
PsuI RGATCY 2 cut(s) 536, 991
RsaI GTAC 3 cut(s) 430, 823, 908
RsaNI GTAC 3 cut(s) 429, 822, 907
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 776
SatI GCNGC 3 cut(s) 277, 772, 987
Sau3AI GATC 8 cut(s) 387, 510, 536, 579, 655, 664, 843, 991
Sau96I GGNCC 1 cut(s) 444
SchI GAGTC 6 cut(s) 44, 77, 164, 386, 719, 752
ScrFI CCNGG 3 cut(s) 443, 546, 589
SfaNI GCATC 2 cut(s) 562, 574
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
SpeI ACTAGT 1 cut(s) 818
Sse9I AATT 2 cut(s) 557, 596
SsiI CCGC 6 cut(s) 31, 87, 255, 277, 420, 489
SspMI CTAG 2 cut(s) 602, 819
StyD4I CCNGG 3 cut(s) 441, 544, 587
StyI CCWWGG 1 cut(s) 981
TaaI ACNGT 2 cut(s) 799, 851
TaiI ACGT 2 cut(s) 126, 976
TaqI TCGA 6 cut(s) 342, 357, 582, 654, 830, 901
TaqII GACCGA 1 cut(s) 753
TasI AATT 2 cut(s) 557, 596
TatI WGTACW 1 cut(s) 821
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 5 cut(s) 182, 359, 472, 929, 963
Tru1I TTAA 1 cut(s) 776
Tru9I TTAA 1 cut(s) 776
TseFI GTSAC 4 cut(s) 26, 156, 378, 476
TseI GCWGC 2 cut(s) 771, 986
Tsp45I GTSAC 4 cut(s) 26, 156, 378, 476
TspDTI ATGAA 2 cut(s) 260, 942
TspGWI ACGGA 4 cut(s) 46, 301, 464, 512
XapI RAATTY 1 cut(s) 557
XceI RCATGY 1 cut(s) 627
XmiI GTMKAC 2 cut(s) 69, 735
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 2 cut(s) 602, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.