Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010143

Physical Location & Seq

Genomic Coordinates Reverse (-)

22288917 .. 22291220

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAATGGTGGTACGAGAAATGAAGAACCTGGAGCGACCCGGAAGCGCGTCTGTGATTACTGTGGGACTTCAATGGCGCTGCTGTACTGCAGAGCGGACTCCGCCAAGCTCTGCTTCTCCTGTGACCGCGAGGTCCACTCGGCCAATCAGCTTTTCACGAAGCACACTCGCTCGCTGCTCTGCGACGCATGTGATAAATCCCCTGCCTCCATTTTTTGCACGACGGAGGGCTCTGTTCTGTGCCAGAACTGTGACTGGGAAAGCCACAACATTTCGTCGTCCACGGCGGCGACGGCCGTGCACGATAGGAGGCCGCTGGAGGGGTTTTCTGGGTGTCCTTGTTTGAGTGAGTTGCTTGCGGTTGTTGGGTTTGAGAATATGGATAAAAAAACTCTGCTTTTGAGTGATGAGGACGGCCGCGGCCGAGGCGGCGGAGGTGGTGGTGGGTTTTTGGGATGTGGGGTTGATGGCTTTTCGGATTTGGAAGATGGGTTTTCAGACTTTCTGGTATGGGATACTCCCTCTGTTGTTAGTCTTGATGATTTGATCGTTAGCAATCCGGCTTACAAATTTCAGGCCATGGGAGTTCCTCCTCTGCCCAAGAATCGCAATGCTGCTTGTGGCCAACACAAGGAAGAGATAATTCATCAGCTTCGTTTGCTTGTCAAGTCGGAACCCAACCTGTTTAGCGAAGATGTGGATGTTAAATCCCGCAAGGGATTCCAATCCCTCGCGTCCGAACCAAATACGCAACCAGCAAGTTTCTTCACAGGTTTTGGACATGATGCAGAGCCAACTGCATTTCCTGCGCAGGAGGCACATGAATCGCAGTATAATGGTTGCAAGGCTGAAAATCGTGATTCGTGCCTGAAAACATCAATGAGGAGCTACCTTCAGGATTGCTTTGTAGTTCCTGACAAACATTGGTACAACGATGGCACTGGAAGTCGTGCTAATGAGGGTCATGGAGGGCAAAAGAACTCTGAAGCCTCTTCAGGTTTTCCGAAAGTTGTTCCACATGAGATAAGTTGTCAAAACAGAGAGACGGCTCTCTCGCGGTACAAGGAGAAGAAGAAAACAAGGAGGTATGAGAAACAAATCAGATATGAATCACGGAAGGTTCGAGCAGAAAGTAGGACGAGAATTAAAGGACGTTTCGCGAAGATGGATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

392

Amino Acids

43.13

Weight (kDa)

6.82

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	14 - 58	5.6e-07	B-box zinc finger
zf-B_box	PF00643	58 - 105	2.6e-07	B-box zinc finger
CCT	PF06203	347 - 389	4.8e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47890 AT2G47890 AT2G47890
fragaria_vesca	FvH4_2g24910 FvH4_2g24910
malus_domestica	MD03G1277600.v1.1 MD11G1299600.v1.1
prunus_persica	Prupe.8G253900_v2.0.a1 Prupe.8G253900_v2.0.a1
pyrus_communis	pycom03g22100 pycom11g26320
rosa_chinensis	RchiOBHm_Chr6g0292831
rosa_laevigata	RLG00000011989
rosa_multiflora	Rmu_sc0000639.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174670
rosa_rugosa	Rorug06G0230000
rosa_samantha	Rh6AG343300 Rh6BG350500 Rh6CG357500 Rh6DG343400
rosa_wichuraiana	Rw6G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
Acc16I	TGCGCA	1 cut(s)	810
AccBSI	CCGCTC	1 cut(s)	95
AccII	CGCG	6 cut(s)	48, 129, 420, 734, 1057, 1160
AcoI	YGGCCR	5 cut(s)	141, 294, 415, 421, 622
AcsI	RAATTY	1 cut(s)	569
AcuI	CTGAAG	3 cut(s)	878, 978, 1005
AfaI	GTAC	4 cut(s)	13, 86, 929, 1061
AfiI	CCNNNNNNNGG	2 cut(s)	320, 631
AgsI	TTSAA	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	4 cut(s)	98, 130, 137, 169
AluBI	AGCT	4 cut(s)	109, 151, 652, 888
AluI	AGCT	4 cut(s)	109, 151, 652, 888
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	1037
Alw44I	GTGCAC	1 cut(s)	299
AoxI	GGCC	7 cut(s)	141, 294, 311, 415, 421, 576, 622
ApaLI	GTGCAC	1 cut(s)	299
ApeKI	GCWGC	3 cut(s)	79, 175, 614
ApoI	RAATTY	1 cut(s)	569
AspLEI	GCGC	3 cut(s)	48, 79, 811
AspS9I	GGNCC	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	303
BalI	TGGCCA	1 cut(s)	624
BanII	GRGCYC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	66, 162, 601
BccI	CCATC	4 cut(s)	461, 482, 929, 1159
BceAI	ACGGC	5 cut(s)	281, 300, 309, 430, 1062
BcgI	CGANNNNNNTGC	4 cut(s)	280, 314, 807, 841
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	1037
BfmI	CTRYAG	1 cut(s)	88
BfoI	RGCGCY	1 cut(s)	80
BfuI	GTATCC	1 cut(s)	508
BglI	GCCNNNNNGGC	1 cut(s)	429
BisI	GCNGC	8 cut(s)	80, 176, 288, 314, 418, 421, 430, 615
BlsI	GCNGC	8 cut(s)	81, 177, 289, 315, 419, 422, 431, 616
Bme1390I	CCNGG	2 cut(s)	30, 40
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	675
BmrFI	CCNGG	2 cut(s)	30, 40
BmrI	ACTGGG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	775
BmuI	ACTGGG	1 cut(s)	265
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	2 cut(s)	51, 338
BpuMI	CCSGG	1 cut(s)	40
BsaBI	GATNNNNATC	2 cut(s)	724, 1108
BsaJI	CCNNGG	4 cut(s)	282, 418, 424, 579
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 631
Bse1I	ACTGG	2 cut(s)	260, 946
Bse3DI	GCAATG	1 cut(s)	616
Bse8I	GATNNNNATC	2 cut(s)	724, 1108
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	4 cut(s)	282, 418, 424, 579
BseGI	GGATG	2 cut(s)	461, 706
BseJI	GATNNNNATC	2 cut(s)	724, 1108
BseLI	CCNNNNNNNGG	2 cut(s)	320, 631
BseMI	GCAATG	1 cut(s)	616
BseNI	ACTGG	2 cut(s)	260, 946
BseRI	GAGGAG	2 cut(s)	582, 898
BseSI	GKGCMC	1 cut(s)	303
BseX3I	CGGCCG	3 cut(s)	294, 415, 421
BseXI	GCAGC	3 cut(s)	66, 162, 601
Bsh1236I	CGCG	6 cut(s)	48, 129, 420, 734, 1057, 1160
Bsh1285I	CGRYCG	3 cut(s)	297, 418, 424
BshFI	GGCC	7 cut(s)	143, 296, 313, 417, 423, 578, 624
BsiEI	CGRYCG	3 cut(s)	297, 418, 424
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	40, 560
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	320, 631
BsmAI	GTCTC	1 cut(s)	1037
BsmBI	CGTCTC	1 cut(s)	1037
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	7 cut(s)	143, 296, 313, 417, 423, 578, 624
Bsp1286I	GDGCHC	2 cut(s)	233, 303
Bsp143I	GATC	1 cut(s)	546
Bsp19I	CCATGG	1 cut(s)	579
Bsp68I	TCGCGA	1 cut(s)	1160
BspANI	GGCC	7 cut(s)	143, 296, 313, 417, 423, 578, 624
BspFNI	CGCG	6 cut(s)	48, 129, 420, 734, 1057, 1160
BspLI	GGNNCC	1 cut(s)	675
BspMAI	CTGCAG	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	616
BsrI	ACTGG	2 cut(s)	260, 946
BssECI	CCNNGG	4 cut(s)	282, 418, 424, 579
BssMI	GATC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	579
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	62, 251
Bst6I	CTCTTC	2 cut(s)	630, 997
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstC8I	GCNNGC	2 cut(s)	173, 357
BstDSI	CCRYGG	3 cut(s)	282, 418, 579
BstF5I	GGATG	2 cut(s)	461, 706
BstFNI	CGCG	6 cut(s)	48, 129, 420, 734, 1057, 1160
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	3 cut(s)	48, 79, 811
BstKTI	GATC	1 cut(s)	549
BstMAI	GTCTC	1 cut(s)	1037
BstMBI	GATC	1 cut(s)	546
BstMCI	CGRYCG	3 cut(s)	297, 418, 424
BstMWI	GCNNNNNNNGC	7 cut(s)	101, 293, 426, 429, 658, 806, 815
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	192
BstSCI	CCNGG	2 cut(s)	28, 38
BstSFI	CTRYAG	1 cut(s)	88
BstSLI	GKGCMC	1 cut(s)	303
BstUI	CGCG	6 cut(s)	48, 129, 420, 734, 1057, 1160
BstV1I	GCAGC	3 cut(s)	66, 162, 601
BstZI	CGGCCG	3 cut(s)	294, 415, 421
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	7 cut(s)	143, 296, 313, 417, 423, 578, 624
BtgI	CCRYGG	3 cut(s)	282, 418, 579
BtsCI	GGATG	2 cut(s)	461, 706
BtsIMutI	CAGTG	1 cut(s)	939
BtuMI	TCGCGA	1 cut(s)	1160
Cac8I	GCNNGC	2 cut(s)	173, 357
CfoI	GCGC	3 cut(s)	48, 79, 811
Cfr13I	GGNCC	1 cut(s)	133
Cfr42I	CCGCGG	1 cut(s)	421
CseI	GACGC	3 cut(s)	37, 194, 723
Csp6I	GTAC	4 cut(s)	12, 85, 928, 1060
CviAII	CATG	6 cut(s)	189, 580, 782, 821, 965, 1019
CviQI	GTAC	4 cut(s)	12, 85, 928, 1060
DpnI	GATC	1 cut(s)	548
DpnII	GATC	1 cut(s)	546
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	5 cut(s)	141, 294, 415, 421, 622
EagI	CGGCCG	3 cut(s)	294, 415, 421
Eam1104I	CTCTTC	2 cut(s)	630, 997
EarI	CTCTTC	2 cut(s)	630, 997
EciI	GGCGGA	2 cut(s)	91, 447
EclXI	CGGCCG	3 cut(s)	294, 415, 421
Eco130I	CCWWGG	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	133
Eco52I	CGGCCG	3 cut(s)	294, 415, 421
Eco57I	CTGAAG	3 cut(s)	878, 978, 1005
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	579
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	579
Esp3I	CGTCTC	1 cut(s)	1037
FaeI	CATG	6 cut(s)	192, 583, 785, 824, 968, 1022
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	6 cut(s)	188, 579, 781, 820, 964, 1018
FauI	CCCGC	1 cut(s)	719
Fnu4HI	GCNGC	8 cut(s)	80, 176, 288, 314, 418, 421, 430, 615
FokI	GGATG	2 cut(s)	468, 713
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	8 cut(s)	80, 176, 288, 314, 418, 421, 430, 615
FspI	TGCGCA	1 cut(s)	810
GlaI	GCGC	3 cut(s)	47, 78, 810
GluI	GCNGC	8 cut(s)	80, 176, 288, 314, 418, 421, 430, 615
GsuI	CTGGAG	2 cut(s)	51, 338
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	7 cut(s)	143, 296, 313, 417, 423, 578, 624
HapII	CCGG	2 cut(s)	40, 560
HgaI	GACGC	3 cut(s)	37, 194, 723
HhaI	GCGC	3 cut(s)	48, 79, 811
Hin1II	CATG	6 cut(s)	192, 583, 785, 824, 968, 1022
Hin6I	GCGC	3 cut(s)	46, 77, 809
HinP1I	GCGC	3 cut(s)	46, 77, 809
HinfI	GANTC	6 cut(s)	98, 604, 720, 824, 860, 1109
HpaII	CCGG	2 cut(s)	40, 560
Hpy166II	GTNNAC	3 cut(s)	136, 282, 301
Hpy188I	TCNGA	7 cut(s)	478, 499, 673, 739, 985, 1005, 1103
Hpy188III	TCNNGA	6 cut(s)	157, 536, 857, 896, 914, 1159
Hpy8I	GTNNAC	3 cut(s)	136, 282, 301
Hpy99I	CGWCG	4 cut(s)	188, 226, 280, 295
HpyAV	CCTTC	2 cut(s)	902, 1111
HpyCH4III	ACNGT	2 cut(s)	62, 251
HpyCH4IV	ACGT	1 cut(s)	1153
HpyCH4V	TGCA	6 cut(s)	90, 219, 301, 788, 800, 843
HpyF10VI	GCNNNNNNNGC	7 cut(s)	101, 293, 426, 429, 658, 806, 815
HpySE526I	ACGT	1 cut(s)	1153
Hsp92II	CATG	6 cut(s)	192, 583, 785, 824, 968, 1022
HspAI	GCGC	3 cut(s)	46, 77, 809
KspI	CCGCGG	1 cut(s)	421
Kzo9I	GATC	1 cut(s)	546
LmnI	GCTCC	2 cut(s)	32, 885
Lsp1109I	GCAGC	3 cut(s)	66, 162, 601
LweI	GCATC	1 cut(s)	775
MaeII	ACGT	1 cut(s)	1153
MaeIII	GTNAC	2 cut(s)	122, 251
MalI	GATC	1 cut(s)	548
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	1 cut(s)	546
MboII	GAAGA	9 cut(s)	35, 497, 647, 704, 757, 984, 1081, 1084, 1174
MhlI	GDGCHC	2 cut(s)	233, 303
MlsI	TGGCCA	1 cut(s)	624
MluCI	AATT	3 cut(s)	569, 642, 1143
MluNI	TGGCCA	1 cut(s)	624
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	651
Mox20I	TGGCCA	1 cut(s)	624
MscI	TGGCCA	1 cut(s)	624
MseI	TTAA	2 cut(s)	705, 1146
Msp20I	TGGCCA	1 cut(s)	624
MspA1I	CMGCKG	2 cut(s)	316, 420
MspI	CCGG	2 cut(s)	40, 560
MspR9I	CCNGG	2 cut(s)	30, 40
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	6 cut(s)	48, 129, 420, 734, 1057, 1160
MwoI	GCNNNNNNNGC	7 cut(s)	101, 293, 426, 429, 658, 806, 815
NciI	CCSGG	1 cut(s)	40
NcoI	CCATGG	1 cut(s)	579
NdeII	GATC	1 cut(s)	546
NlaIII	CATG	6 cut(s)	192, 583, 785, 824, 968, 1022
NlaIV	GGNNCC	1 cut(s)	675
NmeAIII	GCCGAG	2 cut(s)	119, 449
NmuCI	GTSAC	2 cut(s)	122, 251
NruI	TCGCGA	1 cut(s)	1160
NsbI	TGCGCA	1 cut(s)	810
NspI	RCATGY	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	1120
PfeI	GAWTC	5 cut(s)	604, 720, 824, 860, 1109
PkrI	GCNGC	8 cut(s)	81, 177, 289, 315, 419, 422, 431, 616
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	675
PspPI	GGNCC	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	92
RruI	TCGCGA	1 cut(s)	1160
RsaI	GTAC	4 cut(s)	13, 86, 929, 1061
RsaNI	GTAC	4 cut(s)	12, 85, 928, 1060
SacII	CCGCGG	1 cut(s)	421
SaqAI	TTAA	2 cut(s)	705, 1146
SatI	GCNGC	8 cut(s)	80, 176, 288, 314, 418, 421, 430, 615
Sau3AI	GATC	1 cut(s)	546
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	30, 40
SduI	GDGCHC	2 cut(s)	233, 303
SfaNI	GCATC	1 cut(s)	775
SfcI	CTRYAG	1 cut(s)	88
Sfr303I	CCGCGG	1 cut(s)	421
SgrBI	CCGCGG	1 cut(s)	421
SinI	GGWCC	1 cut(s)	133
Sse9I	AATT	3 cut(s)	569, 642, 1143
StyD4I	CCNGG	2 cut(s)	28, 38
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	2 cut(s)	62, 251
TaiI	ACGT	1 cut(s)	1156
TaqI	TCGA	1 cut(s)	1123
TasI	AATT	3 cut(s)	569, 642, 1143
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	5 cut(s)	290, 316, 420, 423, 432
TfiI	GAWTC	5 cut(s)	604, 720, 824, 860, 1109
Tru1I	TTAA	2 cut(s)	705, 1146
Tru9I	TTAA	2 cut(s)	705, 1146
TscAI	CASTG	1 cut(s)	946
TseFI	GTSAC	2 cut(s)	122, 251
TseI	GCWGC	3 cut(s)	79, 175, 614
Tsp45I	GTSAC	2 cut(s)	122, 251
TspDTI	ATGAA	5 cut(s)	17, 36, 635, 837, 1122
TspGWI	ACGGA	2 cut(s)	239, 1129
TspRI	CASTG	1 cut(s)	946
VneI	GTGCAC	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	1 cut(s)	569
XceI	RCATGY	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.