MD11G1299600.v1.1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0010143
Physical Location & Seq
Reverse (-)
41597900 .. 41601177
3278 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1299600.v1.1.491

Sequence Viewer

Length: 1173 bp
ATGAATGGAGGGACGAGAAATGAAGAATCTGAAGCGACCCAGAAGCGCGTCTGTGATTACTGTGGGACTTCAATGGCGCTGCTGTACTGCAGAGCCGACTCAGCCAAGCTCTGCTTCTCCTGCGACCGTGAGGTCCACTCGACCAATCAGCTTTTCACAAAGCACACTCGCTCGCTGCTCTGCGACGCATGTGATAAATCCCCTGCCTCCATTTTTTGCACGACGGAGGGCTCTGTTCTGTGCCAGAACTGTGACTGGGAAAGCCATAATCATACGTCGTCGTCGGCTGCGATGGCGGTGCACGATAGGAGGCCGCTGGAGGGCTTTTCTGGGTGTCCTTGTTTGAGTGAGCTGCTTGCTGTTGTTGGGTTTGAGAATATGGATAAAAAAGCTCTGCTTTTGAGTGATGAGGGTGTTGGCGGCGGTGGCGGAGGTAGTGGGTTTTGGGGATGTAGGGTTGGTGGGGTTGATGGGTTTTCGGATTTGGAAGAAGGGTTTTCGGACTTTCCAGTTTGGGATACTCCCTCTGTTGTTAGTCTTGATGATTTGATTGTTAACAATCCGGCTTACAAATTTCAGGCCATGGGAGTTCCTCCTCTGCCTAAGAATCGCAATGCTGCGTGCGGTCAGCACAAGGAAGAGATACTTCATCAGCTTCGTGTGCTTGTCAAGTCGGAACCCAACTTGTTTAGTGAAGATATGGATGTTAAATCCCCCAAGGGATTCCAATCCCTCGCGTCCGAACAAAATGCGCAACCAGGACGTTTCTTCACAGGTTTTGAACATGATGCAGAGCCAACTGCGTTTCCTGCTTATGGGGCCCGTGAATCGCAGTATAATGATTGCGGCAAGGCAGAAAATCAAGATTCGCACCCGAAAACATTGCTAAGGAGCTACCTTCAGGACTGCGGTGTAGTTCCTGACAAACATTCGTACAATGATGGCAGTGGAAGTCGTTTTAATGAGGGTTATGGAGGGGAAATGAACTCCGGAGCCTCTTCAGCTTTTCCAAAAGTTGTTCCACATTGTCAAAACAGAGAGACCGCTCTCTCGCGGTACAAGGAGAAGAAGAAAACAAGGAGGTATGAGAAGCACATCAGATATGAATCGCGGAAGGTTCGAGCAGAAAGTAGGACGAGAATTAAAGGACGTTTCGCGAAGATGGACCGCTGA

Protein Analysis

391

Amino Acids

43.09

Weight (kDa)

6.47

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 14 - 58 5.4e-07 B-box zinc finger
zf-B_box PF00643 58 - 92 3.3e-07 B-box zinc finger
CCT PF06203 346 - 388 5.4e-16 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47890 AT2G47890 AT2G47890
fragaria_vesca FvH4_2g24910 FvH4_2g24910
malus_domestica MD03G1277600.v1.1 MD11G1299600.v1.1
prunus_persica Prupe.8G253900_v2.0.a1 Prupe.8G253900_v2.0.a1
pyrus_communis pycom03g22100 pycom11g26320
rosa_chinensis RchiOBHm_Chr6g0292831
rosa_laevigata RLG00000011989
rosa_multiflora Rmu_sc0000639.1_g000022
rosa_roxburghii Rroxscaffold_7G00174670
rosa_rugosa Rorug06G0230000
rosa_samantha Rh6AG343300 Rh6BG350500 Rh6CG357500 Rh6DG343400
rosa_wichuraiana Rw6G029940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
Acc16I TGCGCA 1 cut(s) 753
AccBSI CCGCTC 1 cut(s) 1046
AccII CGCG 5 cut(s) 48, 737, 1054, 1111, 1157
AccIII TCCGGA 1 cut(s) 989
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 3 cut(s) 51, 884, 984
AfaI GTAC 3 cut(s) 86, 935, 1058
AfiI CCNNNNNNNGG 2 cut(s) 320, 815
AgsI TTSAA 2 cut(s) 72, 782
AjnI CCWGG 1 cut(s) 757
AjuI GAANNNNNNNTTGG 4 cut(s) 98, 130, 137, 169
AluBI AGCT 7 cut(s) 109, 151, 352, 392, 655, 894, 1004
AluI AGCT 7 cut(s) 109, 151, 352, 392, 655, 894, 1004
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 1034
Alw44I GTGCAC 1 cut(s) 299
Aor13HI TCCGGA 1 cut(s) 989
AoxI GGCC 3 cut(s) 311, 579, 819
ApaI GGGCCC 1 cut(s) 823
ApaLI GTGCAC 1 cut(s) 299
ApeKI GCWGC 5 cut(s) 79, 175, 287, 352, 617
ApoI RAATTY 1 cut(s) 572
AspLEI GCGC 3 cut(s) 48, 79, 754
AspS9I GGNCC 4 cut(s) 133, 819, 820, 1165
AvaII GGWCC 2 cut(s) 133, 1165
BaeGI GKGCMC 2 cut(s) 303, 823
BanII GRGCYC 2 cut(s) 233, 823
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 5 cut(s) 66, 162, 274, 339, 604
BccI CCATC 4 cut(s) 286, 464, 935, 1156
BcgI CGANNNNNNTGC 6 cut(s) 280, 314, 731, 765, 865, 899
BciT130I CCWGG 1 cut(s) 759
BciVI GTATCC 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 1034
BfmI CTRYAG 1 cut(s) 88
BfoI RGCGCY 1 cut(s) 80
BfuI GTATCC 1 cut(s) 511
BisI GCNGC 8 cut(s) 80, 176, 288, 314, 353, 421, 618, 847
BlsI GCNGC 8 cut(s) 81, 177, 289, 315, 354, 422, 619, 848
Bme1390I CCNGG 1 cut(s) 759
Bme18I GGWCC 2 cut(s) 133, 1165
BmgT120I GGNCC 4 cut(s) 133, 819, 820, 1165
BmiI GGNNCC 4 cut(s) 678, 820, 821, 994
BmrFI CCNGG 1 cut(s) 759
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 778
BmuI ACTGGG 1 cut(s) 265
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 887
BsaBI GATNNNNATC 2 cut(s) 727, 1105
BsaI GGTCTC 1 cut(s) 1034
BsaJI CCNNGG 2 cut(s) 582, 717
BsaWI WCCGGW 1 cut(s) 989
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 815
Bse1I ACTGG 2 cut(s) 260, 509
Bse3DI GCAATG 2 cut(s) 619, 881
Bse8I GATNNNNATC 2 cut(s) 727, 1105
BseAI TCCGGA 1 cut(s) 989
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 2 cut(s) 582, 717
BseGI GGATG 2 cut(s) 455, 709
BseJI GATNNNNATC 2 cut(s) 727, 1105
BseLI CCNNNNNNNGG 2 cut(s) 320, 815
BseMI GCAATG 2 cut(s) 619, 881
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 260, 509
BseRI GAGGAG 1 cut(s) 585
BseSI GKGCMC 2 cut(s) 303, 823
BseXI GCAGC 5 cut(s) 66, 162, 274, 339, 604
Bsh1236I CGCG 5 cut(s) 48, 737, 1054, 1111, 1157
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 3 cut(s) 313, 581, 821
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 2 cut(s) 563, 990
BslFI GGGAC 2 cut(s) 25, 79
BslI CCNNNNNNNGG 2 cut(s) 320, 815
BsmAI GTCTC 1 cut(s) 1034
BsmFI GGGAC 2 cut(s) 25, 79
BsnI GGCC 3 cut(s) 313, 581, 821
Bso31I GGTCTC 1 cut(s) 1034
Bsp120I GGGCCC 1 cut(s) 819
Bsp1286I GDGCHC 3 cut(s) 233, 303, 823
Bsp13I TCCGGA 1 cut(s) 989
Bsp19I CCATGG 1 cut(s) 582
Bsp68I TCGCGA 1 cut(s) 1157
BspANI GGCC 3 cut(s) 313, 581, 821
BspCNI CTCAG 1 cut(s) 113
BspEI TCCGGA 1 cut(s) 989
BspFNI CGCG 5 cut(s) 48, 737, 1054, 1111, 1157
BspLI GGNNCC 4 cut(s) 678, 820, 821, 994
BspMAI CTGCAG 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 1034
BsrBI CCGCTC 1 cut(s) 1046
BsrDI GCAATG 2 cut(s) 619, 881
BsrI ACTGG 2 cut(s) 260, 509
BssECI CCNNGG 2 cut(s) 582, 717
BssT1I CCWWGG 2 cut(s) 582, 717
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 3 cut(s) 62, 128, 251
Bst6I CTCTTC 2 cut(s) 633, 1003
BstC8I GCNNGC 3 cut(s) 173, 357, 622
BstDEI CTNAG 3 cut(s) 100, 603, 887
BstDSI CCRYGG 1 cut(s) 582
BstF5I GGATG 2 cut(s) 455, 709
BstFNI CGCG 5 cut(s) 48, 737, 1054, 1111, 1157
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 3 cut(s) 48, 79, 754
BstMAI GTCTC 1 cut(s) 1034
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 8 cut(s) 101, 120, 293, 426, 661, 809, 818, 1001
BstNI CCWGG 1 cut(s) 759
BstNSI RCATGY 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 757
BstSFI CTRYAG 1 cut(s) 88
BstSLI GKGCMC 2 cut(s) 303, 823
BstUI CGCG 5 cut(s) 48, 737, 1054, 1111, 1157
BstV1I GCAGC 5 cut(s) 66, 162, 274, 339, 604
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 3 cut(s) 313, 581, 821
BtgI CCRYGG 1 cut(s) 582
BtgZI GCGATG 1 cut(s) 305
BtsCI GGATG 2 cut(s) 455, 709
BtsI GCAGTG 1 cut(s) 952
BtsIMutI CAGTG 1 cut(s) 952
BtuMI TCGCGA 1 cut(s) 1157
Cac8I GCNNGC 3 cut(s) 173, 357, 622
CfoI GCGC 3 cut(s) 48, 79, 754
Cfr13I GGNCC 4 cut(s) 133, 819, 820, 1165
CseI GACGC 3 cut(s) 37, 194, 726
Csp6I GTAC 3 cut(s) 85, 934, 1057
CviAII CATG 3 cut(s) 189, 583, 785
CviQI GTAC 3 cut(s) 85, 934, 1057
DdeI CTNAG 3 cut(s) 100, 603, 887
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Eam1104I CTCTTC 2 cut(s) 633, 1003
EarI CTCTTC 2 cut(s) 633, 1003
EciI GGCGGA 1 cut(s) 444
Eco130I CCWWGG 2 cut(s) 582, 717
Eco24I GRGCYC 2 cut(s) 233, 823
Eco31I GGTCTC 1 cut(s) 1034
Eco47I GGWCC 2 cut(s) 133, 1165
Eco57I CTGAAG 3 cut(s) 51, 884, 984
EcoO109I RGGNCCY 1 cut(s) 819
EcoRII CCWGG 1 cut(s) 757
EcoT14I CCWWGG 2 cut(s) 582, 717
EcoT38I GRGCYC 2 cut(s) 233, 823
ErhI CCWWGG 2 cut(s) 582, 717
FaeI CATG 3 cut(s) 192, 586, 788
FalI AAGNNNNNCTT 6 cut(s) 98, 130, 381, 413, 630, 662
FaqI GGGAC 2 cut(s) 25, 79
FatI CATG 3 cut(s) 188, 582, 784
Fnu4HI GCNGC 8 cut(s) 80, 176, 288, 314, 353, 421, 618, 847
FokI GGATG 2 cut(s) 462, 716
FriOI GRGCYC 2 cut(s) 233, 823
Fsp4HI GCNGC 8 cut(s) 80, 176, 288, 314, 353, 421, 618, 847
FspI TGCGCA 1 cut(s) 753
GlaI GCGC 3 cut(s) 47, 78, 753
GluI GCNGC 8 cut(s) 80, 176, 288, 314, 353, 421, 618, 847
GsuI CTGGAG 1 cut(s) 338
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 3 cut(s) 313, 581, 821
HapII CCGG 2 cut(s) 563, 990
HgaI GACGC 3 cut(s) 37, 194, 726
HhaI GCGC 3 cut(s) 48, 79, 754
Hin1II CATG 3 cut(s) 192, 586, 788
Hin6I GCGC 3 cut(s) 46, 77, 752
HinP1I GCGC 3 cut(s) 46, 77, 752
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 7 cut(s) 26, 98, 607, 723, 827, 866, 1106
HpaI GTTAAC 1 cut(s) 556
HpaII CCGG 2 cut(s) 563, 990
Hpy166II GTNNAC 3 cut(s) 136, 301, 556
Hpy188I TCNGA 6 cut(s) 31, 481, 502, 676, 742, 1100
Hpy188III TCNNGA 6 cut(s) 539, 863, 902, 920, 990, 1156
Hpy8I GTNNAC 3 cut(s) 136, 301, 556
Hpy99I CGWCG 5 cut(s) 188, 226, 280, 283, 286
HpyAV CCTTC 3 cut(s) 485, 908, 1108
HpyCH4III ACNGT 3 cut(s) 62, 128, 251
HpyCH4IV ACGT 3 cut(s) 275, 763, 1150
HpyCH4V TGCA 4 cut(s) 90, 219, 301, 791
HpyF10VI GCNNNNNNNGC 8 cut(s) 101, 120, 293, 426, 661, 809, 818, 1001
HpyF3I CTNAG 3 cut(s) 100, 603, 887
HpySE526I ACGT 3 cut(s) 275, 763, 1150
Hsp92II CATG 3 cut(s) 192, 586, 788
HspAI GCGC 3 cut(s) 46, 77, 752
Kpn2I TCCGGA 1 cut(s) 989
KspAI GTTAAC 1 cut(s) 556
LmnI GCTCC 2 cut(s) 891, 992
Lsp1109I GCAGC 5 cut(s) 66, 162, 274, 339, 604
LweI GCATC 1 cut(s) 778
MaeII ACGT 3 cut(s) 275, 763, 1150
MaeIII GTNAC 1 cut(s) 251
MbiI CCGCTC 1 cut(s) 1046
MboII GAAGA 9 cut(s) 35, 500, 650, 707, 760, 990, 1078, 1081, 1171
MhlI GDGCHC 3 cut(s) 233, 303, 823
MluCI AATT 2 cut(s) 572, 1140
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 654
MroI TCCGGA 1 cut(s) 989
MseI TTAA 4 cut(s) 555, 708, 960, 1143
MspA1I CMGCKG 2 cut(s) 316, 1170
MspI CCGG 2 cut(s) 563, 990
MspR9I CCNGG 1 cut(s) 759
MvaI CCWGG 1 cut(s) 759
MvnI CGCG 5 cut(s) 48, 737, 1054, 1111, 1157
MwoI GCNNNNNNNGC 8 cut(s) 101, 120, 293, 426, 661, 809, 818, 1001
NcoI CCATGG 1 cut(s) 582
NlaIII CATG 3 cut(s) 192, 586, 788
NlaIV GGNNCC 4 cut(s) 678, 820, 821, 994
NmuCI GTSAC 1 cut(s) 251
NruI TCGCGA 1 cut(s) 1157
NsbI TGCGCA 1 cut(s) 753
NspI RCATGY 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 287
PfeI GAWTC 6 cut(s) 26, 607, 723, 827, 866, 1106
PkrI GCNGC 8 cut(s) 81, 177, 289, 315, 354, 422, 619, 848
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 757
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 4 cut(s) 678, 820, 821, 994
PspOMI GGGCCC 1 cut(s) 819
PspPI GGNCC 4 cut(s) 133, 819, 820, 1165
PstI CTGCAG 1 cut(s) 92
RruI TCGCGA 1 cut(s) 1157
RsaI GTAC 3 cut(s) 86, 935, 1058
RsaNI GTAC 3 cut(s) 85, 934, 1057
SaqAI TTAA 4 cut(s) 555, 708, 960, 1143
SatI GCNGC 8 cut(s) 80, 176, 288, 314, 353, 421, 618, 847
Sau96I GGNCC 4 cut(s) 133, 819, 820, 1165
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 759
SduI GDGCHC 3 cut(s) 233, 303, 823
SfaNI GCATC 1 cut(s) 778
SfcI CTRYAG 1 cut(s) 88
SinI GGWCC 2 cut(s) 133, 1165
Sse9I AATT 2 cut(s) 572, 1140
StyD4I CCNGG 1 cut(s) 757
StyI CCWWGG 2 cut(s) 582, 717
TaaI ACNGT 3 cut(s) 62, 128, 251
TaiI ACGT 3 cut(s) 278, 766, 1153
TaqI TCGA 2 cut(s) 140, 1120
TasI AATT 2 cut(s) 572, 1140
TatI WGTACW 1 cut(s) 84
TauI GCSGC 3 cut(s) 316, 423, 849
TfiI GAWTC 6 cut(s) 26, 607, 723, 827, 866, 1106
Tru1I TTAA 4 cut(s) 555, 708, 960, 1143
Tru9I TTAA 4 cut(s) 555, 708, 960, 1143
TscAI CASTG 1 cut(s) 952
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 5 cut(s) 79, 175, 287, 352, 617
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 5 cut(s) 17, 36, 638, 998, 1119
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 952
VneI GTGCAC 1 cut(s) 299
VpaK11BI GGWCC 2 cut(s) 133, 1165
XapI RAATTY 1 cut(s) 572
XceI RCATGY 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.