RLG00000011989

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
14359993 .. 14364094
4102 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011989

Sequence Viewer

Length: 1422 bp
ATGAATGGTTTCAAGGAAGAAGACGAAGCAGCGCACCAGAACATAGGGCAGCAGAAGCAGAAGAAGAAGAAGAGGCTCTGTGATTACTGTGGAGTCTCCATGGCTCTGCTCTACTGCAGAGCCGACTCTGCTAAGCTCTGTTTCTCTTGTGACAAAGAAGTCCACTCGGCTAATCAGCTTTTCATCAAGCACACTCGGTCACAGCTCTGTGACGCCTGTGACGAAGCCCCTGCTTCTATTTTCTGCTCTACTGAGAGCTCTGTGCTGTGCCAGAACTGTGACTGGGAAAGGCATAATCTGTCGTCGGCGACGGTGCACGATAGGAGGCCGGTGGAGGGTTTTAGTGGGAACCCTGGGTTGAATGAGCTGCTGGCGTTTGTGGGGTTTGAGAATCTGGATAAGAAAGGTTTGGTTGTTAGTGAGGAGAGTAGCGGTGGTGGTGGGTTTGATGGGTCTGGGCTTGATGGGTCGTTGGGTTTGTCCGAGGGGTTTTCGGATTTTCTGGTTTGGGAAACTCCCTCTGTTGTTAGTCTTGATGATTTGATTGTTTCGAGTCCGGCTCATAAGTTTCAGGCTATGGGGGTTCCTCCTCTGCCCAAGAACCGGAATGCTAAGTGTGGGCGACACAAGGAAGAGATACTGAGTCAGCTTCGGGTAGTAGCAAAGTCTGAACCCAGTTTGATGAATGAGGATGTAGATCTTAATTCCTTCATGAGATTCCAATCACCGGAGACTGAGCATGATATGCAATCAGGGGATTTCTGTACAAATTTTGAACAGGATGCGGAGCCGCTTGCGTTTCCTGCCTATGAGGCACAGGAGTTTGAGGCTAATCATTATGGCAAGTCTTCAAGTCAAGATTTCTTCCCAAAAACATTACAGAGGAGCTACCTTCAGGACTGTTCTATGGTTCCTGATTTAAATTCAAATAATGATGGCAGTGCAAGTCATGCTAGTGATGGTTTTGGAGGGAAAATGAATTCTGAAGCCTCTTCAGCTTTCCCAAAAGTTCCTTCACATGAATGTACTCTAAATAGAGAGTCTGCACTCTCAAGGTACAAGGAGAAGAAGAAAACAAGGAGGTACGATAAGCACATCAGCGTACCACAGTTTGGTGCTGCTGGTCAGGCTCCTATTACTTTCTTACGATTCGACAGCGATATTCCTCAAAGACAAGGCTTACGTACAACAAGTTTGGTCCAGTGTGGTGACCTTGGTCATTATCACTTGAACTTAGAAGACATAAGCCTTGCTGGTCGACCACTTGGTATCCCAAAACATGTTTTTGTTCCAAGTAGAAGCAACCGCGGCACGGGCATAGACACTGGAACTGATATTTCGCTGATCATTGGTCCTGCTTTTGATATACTCAAAAGAGCCTTGTTGAACCAGTTTACTCGCCAGTTTCTGGATTCTCTGTGA

Protein Analysis

474

Amino Acids

52.15

Weight (kDa)

5.63

Isoelectric Point (pI)

58.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 23 - 68 1.7e-06 B-box zinc finger
zf-B_box PF00643 67 - 110 8.6e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010143)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AccB7I CCANNNNNTGG 2 cut(s) 1112, 1408
AccI GTMKAC 1 cut(s) 1258
AccII CGCG 1 cut(s) 1308
AciI CCGC 5 cut(s) 432, 785, 791, 1306, 1308
AcsI RAATTY 3 cut(s) 769, 922, 979
AcuI CTGAAG 3 cut(s) 878, 978, 1005
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 6 cut(s) 766, 1027, 1058, 1085, 1104, 1186
AfiI CCNNNNNNNGG 6 cut(s) 335, 603, 727, 1112, 1312, 1408
AflIII ACRYGT 1 cut(s) 1279
AgsI TTSAA 7 cut(s) 13, 361, 776, 852, 927, 1231, 1387
AjnI CCWGG 1 cut(s) 352
AjuI GAANNNNNNNTTGG 2 cut(s) 997, 1029
AluBI AGCT 8 cut(s) 136, 178, 205, 258, 367, 649, 888, 998
AluI AGCT 8 cut(s) 136, 178, 205, 258, 367, 649, 888, 998
Alw21I GWGCWC 2 cut(s) 260, 318
Alw26I GTCTC 2 cut(s) 100, 725
Alw44I GTGCAC 1 cut(s) 314
AlwNI CAGNNNCTG 1 cut(s) 1408
AoxI GGCC 1 cut(s) 326
ApaLI GTGCAC 1 cut(s) 314
ApeKI GCWGC 4 cut(s) 29, 49, 367, 1118
ApoI RAATTY 3 cut(s) 769, 922, 979
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 1198, 1352
AsuHPI GGTGA 2 cut(s) 717, 1220
AvaII GGWCC 2 cut(s) 1198, 1352
BaeGI GKGCMC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 260
BbsI GAAGAC 3 cut(s) 27, 840, 1245
Bbv12I GWGCWC 2 cut(s) 260, 318
BbvI GCAGC 4 cut(s) 41, 61, 354, 1105
BccI CCATC 4 cut(s) 443, 458, 929, 953
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BciT130I CCWGG 1 cut(s) 354
BciVI GTATCC 1 cut(s) 1280
BclI TGATCA 1 cut(s) 1344
BcoDI GTCTC 2 cut(s) 100, 725
BfaI CTAG 1 cut(s) 954
BfmI CTRYAG 1 cut(s) 115
BfuI GTATCC 1 cut(s) 1280
BglI GCCNNNNNGGC 1 cut(s) 812
BglII AGATCT 1 cut(s) 697
BisI GCNGC 6 cut(s) 30, 50, 368, 791, 1119, 1309
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 6 cut(s) 31, 51, 369, 792, 1120, 1310
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 2 cut(s) 1198, 1352
BmgT120I GGNCC 2 cut(s) 1198, 1352
BmiI GGNNCC 5 cut(s) 350, 585, 789, 912, 1131
BmrFI CCNGG 1 cut(s) 354
BmrI ACTGGG 2 cut(s) 292, 669
BmsI GCATC 1 cut(s) 772
BmuI ACTGGG 2 cut(s) 292, 669
BoxI GACNNNNGTC 1 cut(s) 1215
BpiI GAAGAC 3 cut(s) 27, 840, 1245
BplI GAGNNNNNCTC 2 cut(s) 544, 576
Bpu1102I GCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 1036
BsaAI YACGTR 1 cut(s) 1184
BsaBI GATNNNNATC 2 cut(s) 696, 721
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 6 cut(s) 99, 352, 353, 483, 1213, 1306
BsaWI WCCGGW 2 cut(s) 603, 727
Bsc4I CCNNNNNNNGG 6 cut(s) 335, 603, 727, 1112, 1312, 1408
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 6 cut(s) 287, 675, 1201, 1330, 1390, 1402
Bse8I GATNNNNATC 2 cut(s) 696, 721
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 6 cut(s) 99, 352, 353, 483, 1213, 1306
BseGI GGATG 2 cut(s) 697, 787
BseJI GATNNNNATC 2 cut(s) 696, 721
BseLI CCNNNNNNNGG 6 cut(s) 335, 603, 727, 1112, 1312, 1408
BseMII CTCAG 3 cut(s) 243, 632, 726
BseNI ACTGG 6 cut(s) 287, 675, 1201, 1330, 1390, 1402
BseRI GAGGAG 3 cut(s) 437, 579, 898
BseSI GKGCMC 1 cut(s) 318
BseXI GCAGC 4 cut(s) 41, 61, 354, 1105
BsgI GTGCAG 1 cut(s) 1029
Bsh1236I CGCG 1 cut(s) 1308
BshFI GGCC 1 cut(s) 328
BsiHKAI GWGCWC 2 cut(s) 260, 318
BsiSI CCGG 4 cut(s) 329, 557, 604, 728
BslI CCNNNNNNNGG 6 cut(s) 335, 603, 727, 1112, 1312, 1408
BsmAI GTCTC 2 cut(s) 100, 725
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 1 cut(s) 328
Bsp1286I GDGCHC 2 cut(s) 260, 318
Bsp1407I TGTACA 1 cut(s) 764
Bsp143I GATC 2 cut(s) 697, 1344
Bsp1720I GCTNAGC 1 cut(s) 132
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 5 cut(s) 432, 785, 791, 1306, 1308
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 3 cut(s) 244, 633, 727
BspFNI CGCG 1 cut(s) 1308
BspHI TCATGA 1 cut(s) 711
BspLI GGNNCC 5 cut(s) 350, 585, 789, 912, 1131
BspMAI CTGCAG 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 328
BsrGI TGTACA 1 cut(s) 764
BsrI ACTGG 6 cut(s) 287, 675, 1201, 1330, 1390, 1402
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 6 cut(s) 99, 352, 353, 483, 1213, 1306
BssMI GATC 2 cut(s) 697, 1344
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 99, 1213
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 5 cut(s) 89, 278, 313, 902, 1110
Bst6I CTCTTC 3 cut(s) 65, 627, 997
BstACI GRCGYC 1 cut(s) 213
BstAPI GCANNNNNTGC 2 cut(s) 745, 950
BstAUI TGTACA 1 cut(s) 764
BstBAI YACGTR 1 cut(s) 1184
BstC8I GCNNGC 2 cut(s) 372, 795
BstDEI CTNAG 6 cut(s) 132, 252, 612, 641, 735, 1234
BstDSI CCRYGG 2 cut(s) 99, 1306
BstEII GGTNACC 1 cut(s) 1208
BstF5I GGATG 2 cut(s) 697, 787
BstFNI CGCG 1 cut(s) 1308
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 2 cut(s) 700, 1347
BstMAI GTCTC 2 cut(s) 100, 725
BstMBI GATC 2 cut(s) 697, 1344
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 1283
BstPAI GACNNNNGTC 1 cut(s) 1215
BstPI GGTNACC 1 cut(s) 1208
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 115
BstSLI GKGCMC 1 cut(s) 318
BstSNI TACGTA 1 cut(s) 1184
BstUI CGCG 1 cut(s) 1308
BstV1I GCAGC 4 cut(s) 41, 61, 354, 1105
BstV2I GAAGAC 3 cut(s) 27, 840, 1245
BstX2I RGATCY 1 cut(s) 697
BstYI RGATCY 1 cut(s) 697
BsuI GTATCC 1 cut(s) 1280
BsuRI GGCC 1 cut(s) 328
BtgI CCRYGG 2 cut(s) 99, 1306
BtsCI GGATG 2 cut(s) 697, 787
BtsI GCAGTG 1 cut(s) 946
BtsIMutI CAGTG 3 cut(s) 946, 1208, 1323
Cac8I GCNNGC 2 cut(s) 372, 795
CaiI CAGNNNCTG 1 cut(s) 1408
CciI TCATGA 1 cut(s) 711
CfoI GCGC 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 1198, 1352
Cfr42I CCGCGG 1 cut(s) 1309
CseI GACGC 1 cut(s) 221
Csp6I GTAC 6 cut(s) 765, 1026, 1057, 1084, 1103, 1185
CviAII CATG 6 cut(s) 100, 712, 740, 950, 1019, 1280
CviQI GTAC 6 cut(s) 765, 1026, 1057, 1084, 1103, 1185
DdeI CTNAG 6 cut(s) 132, 252, 612, 641, 735, 1234
DpnI GATC 2 cut(s) 699, 1346
DpnII GATC 2 cut(s) 697, 1344
DraI TTTAAA 1 cut(s) 921
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 3 cut(s) 65, 627, 997
EarI CTCTTC 3 cut(s) 65, 627, 997
Ecl136II GAGCTC 1 cut(s) 258
Eco105I TACGTA 1 cut(s) 1184
Eco130I CCWWGG 2 cut(s) 99, 1213
Eco24I GRGCYC 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 1198, 1352
Eco53kI GAGCTC 1 cut(s) 258
Eco57I CTGAAG 3 cut(s) 878, 978, 1005
Eco91I GGTNACC 1 cut(s) 1208
EcoICRI GAGCTC 1 cut(s) 258
EcoO65I GGTNACC 1 cut(s) 1208
EcoRI GAATTC 1 cut(s) 979
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 99, 1213
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 2 cut(s) 99, 1213
FaeI CATG 6 cut(s) 103, 715, 743, 953, 1022, 1283
FatI CATG 6 cut(s) 99, 711, 739, 949, 1018, 1279
FbaI TGATCA 1 cut(s) 1344
FblI GTMKAC 1 cut(s) 1258
Fnu4HI GCNGC 6 cut(s) 30, 50, 368, 791, 1119, 1309
FokI GGATG 2 cut(s) 704, 794
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 6 cut(s) 30, 50, 368, 791, 1119, 1309
FspBI CTAG 1 cut(s) 954
GlaI GCGC 1 cut(s) 33
GluI GCNGC 6 cut(s) 30, 50, 368, 791, 1119, 1309
HaeIII GGCC 1 cut(s) 328
HapII CCGG 4 cut(s) 329, 557, 604, 728
HgaI GACGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 6 cut(s) 103, 715, 743, 953, 1022, 1283
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HincII GTYRAC 1 cut(s) 1259
HindII GTYRAC 1 cut(s) 1259
HinfI GANTC 9 cut(s) 93, 125, 391, 553, 643, 717, 1040, 1149, 1412
HpaII CCGG 4 cut(s) 329, 557, 604, 728
HphI GGTGA 2 cut(s) 717, 1220
Hpy166II GTNNAC 4 cut(s) 163, 316, 1259, 1395
Hpy188I TCNGA 4 cut(s) 484, 496, 670, 985
Hpy188III TCNNGA 7 cut(s) 395, 533, 712, 857, 896, 914, 1409
Hpy8I GTNNAC 4 cut(s) 163, 316, 1259, 1395
Hpy99I CGWCG 2 cut(s) 307, 313
HpyAV CCTTC 3 cut(s) 718, 902, 1023
HpyCH4III ACNGT 5 cut(s) 89, 278, 313, 902, 1110
HpyCH4IV ACGT 1 cut(s) 1183
HpyCH4V TGCA 5 cut(s) 117, 316, 748, 944, 1046
HpyF3I CTNAG 6 cut(s) 132, 252, 612, 641, 735, 1234
HpySE526I ACGT 1 cut(s) 1183
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 6 cut(s) 103, 715, 743, 953, 1022, 1283
HspAI GCGC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 1344
KspI CCGCGG 1 cut(s) 1309
Kzo9I GATC 2 cut(s) 697, 1344
LmnI GCTCC 3 cut(s) 787, 885, 1135
Lsp1109I GCAGC 4 cut(s) 41, 61, 354, 1105
LweI GCATC 1 cut(s) 772
MaeI CTAG 1 cut(s) 954
MaeII ACGT 1 cut(s) 1183
MaeIII GTNAC 6 cut(s) 149, 198, 209, 218, 278, 1208
MalI GATC 2 cut(s) 699, 1346
MboI GATC 2 cut(s) 697, 1344
MflI RGATCY 1 cut(s) 697
MhlI GDGCHC 2 cut(s) 260, 318
MluCI AATT 4 cut(s) 703, 769, 922, 979
MlyI GAGTC 5 cut(s) 102, 119, 562, 652, 1049
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 702, 920
MslI CAYNNNNRTG 2 cut(s) 954, 1021
MspA1I CMGCKG 1 cut(s) 1308
MspI CCGG 4 cut(s) 329, 557, 604, 728
MspR9I CCNGG 1 cut(s) 354
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 1308
NcoI CCATGG 1 cut(s) 99
NdeII GATC 2 cut(s) 697, 1344
NlaIII CATG 6 cut(s) 103, 715, 743, 953, 1022, 1283
NlaIV GGNNCC 5 cut(s) 350, 585, 789, 912, 1131
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 6 cut(s) 149, 198, 209, 218, 278, 1208
NspI RCATGY 1 cut(s) 1283
PagI TCATGA 1 cut(s) 711
PasI CCCWGGG 1 cut(s) 353
PciI ACATGT 1 cut(s) 1279
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 613
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 4 cut(s) 391, 717, 1149, 1412
PflMI CCANNNNNTGG 2 cut(s) 1112, 1408
PkrI GCNGC 6 cut(s) 31, 51, 369, 792, 1120, 1310
PleI GAGTC 5 cut(s) 101, 119, 561, 651, 1048
PpsI GAGTC 5 cut(s) 101, 119, 561, 651, 1048
Ppu21I YACGTR 1 cut(s) 1184
PscI ACATGT 1 cut(s) 1279
PshAI GACNNNNGTC 1 cut(s) 1215
Psp124BI GAGCTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 352
PspEI GGTNACC 1 cut(s) 1208
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 5 cut(s) 350, 585, 789, 912, 1131
PspPI GGNCC 2 cut(s) 1198, 1352
PstI CTGCAG 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 1408
PsuI RGATCY 1 cut(s) 697
RsaI GTAC 6 cut(s) 766, 1027, 1058, 1085, 1104, 1186
RsaNI GTAC 6 cut(s) 765, 1026, 1057, 1084, 1103, 1185
RseI CAYNNNNRTG 2 cut(s) 954, 1021
SacI GAGCTC 1 cut(s) 260
SacII CCGCGG 1 cut(s) 1309
SalI GTCGAC 1 cut(s) 1257
SaqAI TTAA 2 cut(s) 702, 920
SatI GCNGC 6 cut(s) 30, 50, 368, 791, 1119, 1309
Sau3AI GATC 2 cut(s) 697, 1344
Sau96I GGNCC 2 cut(s) 1198, 1352
SchI GAGTC 5 cut(s) 102, 119, 562, 652, 1049
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 2 cut(s) 260, 318
SfaNI GCATC 1 cut(s) 772
SfcI CTRYAG 1 cut(s) 115
Sfr303I CCGCGG 1 cut(s) 1309
SgrBI CCGCGG 1 cut(s) 1309
SinI GGWCC 2 cut(s) 1198, 1352
SmiI ATTTAAAT 1 cut(s) 921
SmiMI CAYNNNNRTG 2 cut(s) 954, 1021
SmlI CTYRAG 1 cut(s) 1051
SmoI CTYRAG 1 cut(s) 1051
SnaBI TACGTA 1 cut(s) 1184
Sse9I AATT 4 cut(s) 703, 769, 922, 979
SsiI CCGC 5 cut(s) 432, 785, 791, 1306, 1308
SspMI CTAG 1 cut(s) 954
SstI GAGCTC 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 2 cut(s) 99, 1213
SwaI ATTTAAAT 1 cut(s) 921
TaaI ACNGT 5 cut(s) 89, 278, 313, 902, 1110
TaiI ACGT 1 cut(s) 1186
TaqI TCGA 3 cut(s) 551, 1152, 1258
TaqII GACCGA 1 cut(s) 186
TasI AATT 4 cut(s) 703, 769, 922, 979
TatI WGTACW 2 cut(s) 764, 1025
TauI GCSGC 2 cut(s) 793, 1311
TfiI GAWTC 4 cut(s) 391, 717, 1149, 1412
Tru1I TTAA 2 cut(s) 702, 920
Tru9I TTAA 2 cut(s) 702, 920
TscAI CASTG 3 cut(s) 946, 1208, 1330
TseFI GTSAC 6 cut(s) 149, 198, 209, 218, 278, 1208
TseI GCWGC 4 cut(s) 29, 49, 367, 1118
Tsp45I GTSAC 6 cut(s) 149, 198, 209, 218, 278, 1208
TspDTI ATGAA 6 cut(s) 17, 172, 698, 700, 992, 1035
TspRI CASTG 3 cut(s) 946, 1208, 1330
Van91I CCANNNNNTGG 2 cut(s) 1112, 1408
VneI GTGCAC 1 cut(s) 314
VpaK11BI GGWCC 2 cut(s) 1198, 1352
XapI RAATTY 3 cut(s) 769, 922, 979
XceI RCATGY 1 cut(s) 1283
XmiI GTMKAC 1 cut(s) 1258
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.