Rh6CG357500

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010143
Physical Location & Seq
Reverse (-)
54648074 .. 54649836
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG357500.1

Sequence Viewer

Length: 1170 bp
ATGAATGGTTTCAAGGAAGAAGACGAACCAGGGCACCAGAACATGGGGCCGAAGATGAATAAGAAGAGGCTCTGTGATTACTGCGGAGTCTCCATGGCTCTGCTCTACTGCAGAGCCGACTCTGCTAAGCTCTGTTTCTCTTGTGACAAAGAGGTCCACTCGGCTAATCAGCTTTTCATCAAGCACACTCGGTCACAGCTCTGTGACGCCTGTGACGAAGCCCCTGCTTCTATTTTCTGCTCTACTGAGAGCTCTGTGCTGTGCCAGAACTGTGACTGGGAAAGGCATAATCTGTCGTCGGCGACGGTGCACGTTAGGAGGCCGGTGGAGGGTTTTACCGGGAACCCTGGGTTGAATGAGCTGCTGGCGTTTGTGGGGTTTGAGAATCTGGATAAGAAAGGTTTGGTTGTTAGTGAGGAGAGTAGCGGTGGTGGTGGTGGGTTTGATGGGTCTGGGCTTGACGGGTCGTTGGGTTTGTCCGAGGGGTTTTCGGATTTTCTGGTTTGGGAAACTCCCTCTGTTGTTAGTCTTGATGATTTGATTGTTTCGAGTCCGGCTCATAAGTTTCAGGCTATGGGGGTTCCTCCTCTGCCCAAGAACCGGAATGCTAAGTGTGGGCGACACAAGGAAGAGATACTGAGTCAGCTTCGGGTAGTAGCAAAGTCTGAACCCAATTTGATGAATGAGGATGTAGATCTTAATTCCTTCATGAGATTCCAATCACCGGAGACTGAGCATAATATGCAATCAGGGGGTTTCTGTACAAATTTTGAACAGGATGCGGAGCCGCTTGCGTTTCCTGCTTATGAGGCACAGGAGTCTGAGGCTAATCATTATGACAAGTCTTCAAGTCAAGATTTCTTCCCAAAAACATTACAGAGGAGCTACCTTCAGGACTGTTCTATGGTTCCTGATTTAAATTCGAATAATGATGGCACTGCAAGTCATGCTAGTGATGGTTTTGGAGGGCAAATGAATTCTGAAGCCTCTTCAGCTTTCCCAAAAGTTCCTTCACATGAATGTACTCTAAATAGAGAGTCTGCACTCTCAAGGTACAAGGAGAAGAAGAAAACAAGGAGGTACGATAAGCACATCAGGTATGAATCAAGGAAGGTTCGAGCAGAAAGTAGGACAAGAATTAAGGGACGTTTTGCAAAGATAGATAACTAA

Protein Analysis

389

Amino Acids

43.19

Weight (kDa)

5.79

Isoelectric Point (pI)

62.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 20 - 66 1e-06 B-box zinc finger
zf-B_box PF00643 65 - 108 1.5e-06 B-box zinc finger
CCT PF06203 345 - 386 4e-16 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47890 AT2G47890 AT2G47890
fragaria_vesca FvH4_2g24910 FvH4_2g24910
malus_domestica MD03G1277600.v1.1 MD11G1299600.v1.1
prunus_persica Prupe.8G253900_v2.0.a1 Prupe.8G253900_v2.0.a1
pyrus_communis pycom03g22100 pycom11g26320
rosa_chinensis RchiOBHm_Chr6g0292831
rosa_laevigata RLG00000011989
rosa_multiflora Rmu_sc0000639.1_g000022
rosa_roxburghii Rroxscaffold_7G00174670
rosa_rugosa Rorug06G0230000
rosa_samantha Rh6AG343300 Rh6BG350500 Rh6CG357500 Rh6DG343400
rosa_wichuraiana Rw6G029940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 33
AccB7I CCANNNNNTGG 1 cut(s) 43
AciI CCGC 4 cut(s) 84, 426, 782, 788
AcsI RAATTY 3 cut(s) 766, 919, 976
AcuI CTGAAG 3 cut(s) 875, 975, 1002
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 4 cut(s) 763, 1024, 1055, 1082
AfiI CCNNNNNNNGG 4 cut(s) 43, 329, 600, 724
AgsI TTSAA 4 cut(s) 13, 355, 773, 849
AjnI CCWGG 2 cut(s) 28, 346
AjuI GAANNNNNNNTTGG 2 cut(s) 994, 1026
AluBI AGCT 8 cut(s) 130, 172, 199, 252, 361, 646, 885, 995
AluI AGCT 8 cut(s) 130, 172, 199, 252, 361, 646, 885, 995
Alw21I GWGCWC 2 cut(s) 254, 312
Alw26I GTCTC 2 cut(s) 94, 722
Alw44I GTGCAC 1 cut(s) 308
AoxI GGCC 2 cut(s) 47, 320
ApaLI GTGCAC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 361
ApoI RAATTY 3 cut(s) 766, 919, 976
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 47, 154
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 714
AsuII TTCGAA 1 cut(s) 923
AvaII GGWCC 1 cut(s) 154
BaeGI GKGCMC 2 cut(s) 36, 312
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 254
BbsI GAAGAC 2 cut(s) 27, 837
Bbv12I GWGCWC 2 cut(s) 254, 312
BbvI GCAGC 1 cut(s) 348
BccI CCATC 3 cut(s) 440, 926, 950
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BciT130I CCWGG 2 cut(s) 30, 348
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 94, 722
BfaI CTAG 1 cut(s) 951
BfmI CTRYAG 1 cut(s) 109
BglII AGATCT 1 cut(s) 694
BisI GCNGC 2 cut(s) 362, 788
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 2 cut(s) 363, 789
Bme1390I CCNGG 3 cut(s) 30, 340, 348
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 47, 154
BmiI GGNNCC 6 cut(s) 35, 48, 344, 582, 786, 909
BmrFI CCNGG 3 cut(s) 30, 340, 348
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 769
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 2 cut(s) 27, 837
BplI GAGNNNNNCTC 4 cut(s) 143, 175, 541, 573
Bpu1102I GCTNAGC 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 923
BpuEI CTTGAG 1 cut(s) 1033
BpuMI CCSGG 1 cut(s) 340
BsaBI GATNNNNATC 2 cut(s) 693, 718
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 5 cut(s) 29, 93, 346, 347, 480
BsaWI WCCGGW 2 cut(s) 600, 724
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 329, 600, 724
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 281
Bse8I GATNNNNATC 2 cut(s) 693, 718
BseBI CCWGG 2 cut(s) 30, 348
BseDI CCNNGG 5 cut(s) 29, 93, 346, 347, 480
BseGI GGATG 2 cut(s) 694, 784
BseJI GATNNNNATC 2 cut(s) 693, 718
BseLI CCNNNNNNNGG 4 cut(s) 43, 329, 600, 724
BseMII CTCAG 4 cut(s) 237, 629, 723, 813
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 3 cut(s) 431, 576, 895
BseSI GKGCMC 2 cut(s) 36, 312
BseXI GCAGC 1 cut(s) 348
BsgI GTGCAG 1 cut(s) 1026
BshFI GGCC 2 cut(s) 49, 322
BshNI GGYRCC 1 cut(s) 33
BsiHKAI GWGCWC 2 cut(s) 254, 312
BsiSI CCGG 5 cut(s) 323, 339, 554, 601, 725
BslFI GGGAC 1 cut(s) 1158
BslI CCNNNNNNNGG 4 cut(s) 43, 329, 600, 724
BsmAI GTCTC 2 cut(s) 94, 722
BsmFI GGGAC 1 cut(s) 1158
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 2 cut(s) 49, 322
Bsp119I TTCGAA 1 cut(s) 923
Bsp1286I GDGCHC 3 cut(s) 36, 254, 312
Bsp1407I TGTACA 1 cut(s) 761
Bsp143I GATC 1 cut(s) 694
Bsp1720I GCTNAGC 1 cut(s) 126
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 4 cut(s) 84, 426, 782, 788
BspANI GGCC 2 cut(s) 49, 322
BspCNI CTCAG 4 cut(s) 238, 630, 724, 814
BspHI TCATGA 1 cut(s) 708
BspLI GGNNCC 6 cut(s) 35, 48, 344, 582, 786, 909
BspMAI CTGCAG 1 cut(s) 113
BspT104I TTCGAA 1 cut(s) 923
BspT107I GGYRCC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 322
BsrGI TGTACA 1 cut(s) 761
BsrI ACTGG 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 5 cut(s) 29, 93, 346, 347, 480
BssMI GATC 1 cut(s) 694
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 30, 348
Bst4CI ACNGT 3 cut(s) 272, 307, 899
Bst6I CTCTTC 3 cut(s) 59, 624, 994
BstACI GRCGYC 1 cut(s) 207
BstAPI GCANNNNNTGC 2 cut(s) 742, 947
BstAUI TGTACA 1 cut(s) 761
BstBI TTCGAA 1 cut(s) 923
BstC8I GCNNGC 2 cut(s) 366, 792
BstDEI CTNAG 6 cut(s) 126, 246, 609, 638, 732, 822
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 694, 784
BstKTI GATC 1 cut(s) 697
BstMAI GTCTC 2 cut(s) 94, 722
BstMBI GATC 1 cut(s) 694
BstMWI GCNNNNNNNGC 6 cut(s) 122, 742, 800, 809, 947, 992
BstNI CCWGG 2 cut(s) 30, 348
BstSCI CCNGG 3 cut(s) 28, 338, 346
BstSFI CTRYAG 1 cut(s) 109
BstSLI GKGCMC 2 cut(s) 36, 312
BstV1I GCAGC 1 cut(s) 348
BstV2I GAAGAC 2 cut(s) 27, 837
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
BsuRI GGCC 2 cut(s) 49, 322
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 694, 784
BtsI GCAGTG 1 cut(s) 936
BtsIMutI CAGTG 1 cut(s) 936
Cac8I GCNNGC 2 cut(s) 366, 792
CciI TCATGA 1 cut(s) 708
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 47, 154
CseI GACGC 1 cut(s) 215
Csp6I GTAC 4 cut(s) 762, 1023, 1054, 1081
CviAII CATG 5 cut(s) 43, 94, 709, 947, 1016
CviQI GTAC 4 cut(s) 762, 1023, 1054, 1081
DdeI CTNAG 6 cut(s) 126, 246, 609, 638, 732, 822
DpnI GATC 1 cut(s) 696
DpnII GATC 1 cut(s) 694
DraI TTTAAA 1 cut(s) 918
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 3 cut(s) 59, 624, 994
EarI CTCTTC 3 cut(s) 59, 624, 994
Ecl136II GAGCTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 252
Eco57I CTGAAG 3 cut(s) 875, 975, 1002
EcoICRI GAGCTC 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 976
EcoRII CCWGG 2 cut(s) 28, 346
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 5 cut(s) 46, 97, 712, 950, 1019
FaqI GGGAC 1 cut(s) 1158
FatI CATG 5 cut(s) 42, 93, 708, 946, 1015
Fnu4HI GCNGC 2 cut(s) 362, 788
FokI GGATG 2 cut(s) 701, 791
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 362, 788
FspBI CTAG 1 cut(s) 951
GluI GCNGC 2 cut(s) 362, 788
HaeIII GGCC 2 cut(s) 49, 322
HapII CCGG 5 cut(s) 323, 339, 554, 601, 725
HgaI GACGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 5 cut(s) 46, 97, 712, 950, 1019
HinfI GANTC 9 cut(s) 87, 119, 385, 550, 640, 714, 818, 1037, 1103
HpaII CCGG 5 cut(s) 323, 339, 554, 601, 725
HphI GGTGA 1 cut(s) 714
Hpy166II GTNNAC 2 cut(s) 157, 310
Hpy188I TCNGA 5 cut(s) 481, 493, 667, 823, 982
Hpy188III TCNNGA 6 cut(s) 389, 530, 709, 854, 893, 911
Hpy8I GTNNAC 2 cut(s) 157, 310
Hpy99I CGWCG 2 cut(s) 301, 307
HpyAV CCTTC 4 cut(s) 715, 899, 1020, 1105
HpyCH4III ACNGT 3 cut(s) 272, 307, 899
HpyCH4IV ACGT 2 cut(s) 312, 1147
HpyCH4V TGCA 6 cut(s) 111, 310, 745, 941, 1043, 1154
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 742, 800, 809, 947, 992
HpyF3I CTNAG 6 cut(s) 126, 246, 609, 638, 732, 822
HpySE526I ACGT 2 cut(s) 312, 1147
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 5 cut(s) 46, 97, 712, 950, 1019
Kzo9I GATC 1 cut(s) 694
LmnI GCTCC 2 cut(s) 784, 882
Lsp1109I GCAGC 1 cut(s) 348
LweI GCATC 1 cut(s) 769
MaeI CTAG 1 cut(s) 951
MaeII ACGT 2 cut(s) 312, 1147
MaeIII GTNAC 5 cut(s) 143, 192, 203, 212, 272
MalI GATC 1 cut(s) 696
MboI GATC 1 cut(s) 694
MflI RGATCY 1 cut(s) 694
MhlI GDGCHC 3 cut(s) 36, 254, 312
MluCI AATT 6 cut(s) 673, 700, 766, 919, 976, 1137
MlyI GAGTC 6 cut(s) 96, 113, 559, 649, 827, 1046
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 699, 917, 1140
MslI CAYNNNNRTG 2 cut(s) 951, 1018
MspI CCGG 5 cut(s) 323, 339, 554, 601, 725
MspR9I CCNGG 3 cut(s) 30, 340, 348
Mva1269I GAATGC 1 cut(s) 610
MvaI CCWGG 2 cut(s) 30, 348
MwoI GCNNNNNNNGC 6 cut(s) 122, 742, 800, 809, 947, 992
NciI CCSGG 1 cut(s) 340
NcoI CCATGG 1 cut(s) 93
NdeII GATC 1 cut(s) 694
NlaIII CATG 5 cut(s) 46, 97, 712, 950, 1019
NlaIV GGNNCC 6 cut(s) 35, 48, 344, 582, 786, 909
NmeAIII GCCGAG 1 cut(s) 140
NmuCI GTSAC 5 cut(s) 143, 192, 203, 212, 272
NspV TTCGAA 1 cut(s) 923
PagI TCATGA 1 cut(s) 708
PasI CCCWGGG 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 1 cut(s) 610
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 385, 714, 1103
PflMI CCANNNNNTGG 1 cut(s) 43
PkrI GCNGC 2 cut(s) 363, 789
PleI GAGTC 6 cut(s) 95, 113, 558, 648, 826, 1045
PpsI GAGTC 6 cut(s) 95, 113, 558, 648, 826, 1045
Psp124BI GAGCTC 1 cut(s) 254
Psp6I CCWGG 2 cut(s) 28, 346
PspGI CCWGG 2 cut(s) 28, 346
PspN4I GGNNCC 6 cut(s) 35, 48, 344, 582, 786, 909
PspPI GGNCC 2 cut(s) 47, 154
PstI CTGCAG 1 cut(s) 113
PsuI RGATCY 1 cut(s) 694
RsaI GTAC 4 cut(s) 763, 1024, 1055, 1082
RsaNI GTAC 4 cut(s) 762, 1023, 1054, 1081
RseI CAYNNNNRTG 2 cut(s) 951, 1018
SacI GAGCTC 1 cut(s) 254
SaqAI TTAA 3 cut(s) 699, 917, 1140
SatI GCNGC 2 cut(s) 362, 788
Sau3AI GATC 1 cut(s) 694
Sau96I GGNCC 2 cut(s) 47, 154
SchI GAGTC 6 cut(s) 96, 113, 559, 649, 827, 1046
ScrFI CCNGG 3 cut(s) 30, 340, 348
SduI GDGCHC 3 cut(s) 36, 254, 312
SfaNI GCATC 1 cut(s) 769
SfcI CTRYAG 1 cut(s) 109
SfuI TTCGAA 1 cut(s) 923
SinI GGWCC 1 cut(s) 154
SmiI ATTTAAAT 1 cut(s) 918
SmiMI CAYNNNNRTG 2 cut(s) 951, 1018
SmlI CTYRAG 1 cut(s) 1048
SmoI CTYRAG 1 cut(s) 1048
Sse9I AATT 6 cut(s) 673, 700, 766, 919, 976, 1137
SsiI CCGC 4 cut(s) 84, 426, 782, 788
SspMI CTAG 1 cut(s) 951
SstI GAGCTC 1 cut(s) 254
StyD4I CCNGG 3 cut(s) 28, 338, 346
StyI CCWWGG 1 cut(s) 93
SwaI ATTTAAAT 1 cut(s) 918
TaaI ACNGT 3 cut(s) 272, 307, 899
TaiI ACGT 2 cut(s) 315, 1150
TaqI TCGA 3 cut(s) 548, 923, 1117
TaqII GACCGA 1 cut(s) 180
TasI AATT 6 cut(s) 673, 700, 766, 919, 976, 1137
TatI WGTACW 2 cut(s) 761, 1022
TauI GCSGC 1 cut(s) 790
TfiI GAWTC 3 cut(s) 385, 714, 1103
Tru1I TTAA 3 cut(s) 699, 917, 1140
Tru9I TTAA 3 cut(s) 699, 917, 1140
TscAI CASTG 1 cut(s) 943
TseFI GTSAC 5 cut(s) 143, 192, 203, 212, 272
TseI GCWGC 1 cut(s) 361
Tsp45I GTSAC 5 cut(s) 143, 192, 203, 212, 272
TspDTI ATGAA 8 cut(s) 17, 71, 166, 695, 697, 989, 1032, 1116
TspRI CASTG 1 cut(s) 943
Van91I CCANNNNNTGG 1 cut(s) 43
VneI GTGCAC 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 3 cut(s) 766, 919, 976
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.