pycom11g26320

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010143
Physical Location & Seq
Reverse (-)
28899933 .. 28902163
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g26320.4

Sequence Viewer

Length: 1164 bp
ATGAATGGAGGGACGAGAAATGAAGAATCTGAAGCGACCCATAAGCGCGTCTGTGATTACTGTGGGACTTCAATGGCGCTGCTGTACTGCAGAGCCGACTCAGCTAAGCTCTGCTTCTCCTGCGACCGCGAGGTCCACTCGGCCAATCAGCTTTTCACAAAGCACACTCGCTCGCTGCTCTGCGACGCATGTGATAAATCCCCTGCCTCCATTTTTTGCACGACGGAGGGCTCTGTTCTGTGCCAGAACTGTGACTGGGAAAGCCATAATCTTACGTCGTCGTCGGCTGCGACGGCGGTGCATGATAGGAGGCCGCTGGAGGGCTTCTCTGGGTGTCCTTGTTTGAGTGAGATGCTTGCTGTTGTTGGGTTTGAGAATATGGATAAAAAGGCTCTGCTTTTGAGTGATGAGGGTGGTGGCGGCGGCGGCGGAGGTAGTGGGTTTTGGGGATGTGGGGTTGGTGGGATCGATGGGTTTTCGGATTTGGAAGAAGGGTTTTCGGACTTTCCAGTTTGGGATACTCCCTCTGTTGTTAGTCTTGATGATTTGATTGTTAACAATCCGGCTTACAAATTTCAGGCCATGGGAGTTCCTCCTCTGCCTAAGAATCGCAATGCTGCTTGCGGTCAGCACAAGGAAGAGATACTTCATCAGCTTCGTGTGCTTGTCAAGTCGGAACCCAACTTGTTTGGTGAAGATGTGGAAGTTAAGGGATTCCAATCCCTCGCGTCCGAACAAAATCCGCAACCAGGACGTTTCTTCACAGGTTTTGAACATGATGCAGAGCCAACTGCGTTTCCTGCTTATGAGGCCCGTGAATCGCAGTATAATGATTGCGGCAAGACGGAAAATCAAGATTCGTGCCCGAAAACCATGCTAAGGAGCTACCTTCAGGACTGCTGTGTAGTTCCTGACAAACATTCATACAACGATGGCAGTGGAAGTCGTTCTAATGAGGGTCCTGGAGGGGAAATGAACTCTGGAGCCTCTTCAGCTTTTCCAAAAGTTGTTCCACATTGTCAAAACAGAGAGACCGCTCTCTCGCGGTACAAGGAGAAGAAGAAAACAAGGAGGTATGAGAAGCACATCAGATACGAATCGCGGAAGGTTCGAGCAGAAAGTAGGACGAGAATTAAAGGACGTTTCGCGAAGATGGACAGCTGA

Protein Analysis

388

Amino Acids

42.5

Weight (kDa)

5.93

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47890 AT2G47890 AT2G47890
fragaria_vesca FvH4_2g24910 FvH4_2g24910
malus_domestica MD03G1277600.v1.1 MD11G1299600.v1.1
prunus_persica Prupe.8G253900_v2.0.a1 Prupe.8G253900_v2.0.a1
pyrus_communis pycom03g22100 pycom11g26320
rosa_chinensis RchiOBHm_Chr6g0292831
rosa_laevigata RLG00000011989
rosa_multiflora Rmu_sc0000639.1_g000022
rosa_roxburghii Rroxscaffold_7G00174670
rosa_rugosa Rorug06G0230000
rosa_samantha Rh6AG343300 Rh6BG350500 Rh6CG357500 Rh6DG343400
rosa_wichuraiana Rw6G029940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 1037
AccII CGCG 6 cut(s) 48, 129, 728, 1045, 1102, 1148
AclWI GGATC 1 cut(s) 473
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 3 cut(s) 51, 875, 975
AfaI GTAC 2 cut(s) 86, 1049
AfiI CCNNNNNNNGG 3 cut(s) 320, 749, 879
AgsI TTSAA 2 cut(s) 72, 773
AjnI CCWGG 2 cut(s) 748, 961
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 7 cut(s) 104, 109, 151, 655, 885, 995, 1161
AluI AGCT 7 cut(s) 104, 109, 151, 655, 885, 995, 1161
Alw26I GTCTC 1 cut(s) 1025
AlwI GGATC 1 cut(s) 473
AoxI GGCC 4 cut(s) 141, 311, 579, 810
ApeKI GCWGC 4 cut(s) 79, 175, 287, 617
ApoI RAATTY 1 cut(s) 572
Asp700I GAANNNNTTC 1 cut(s) 946
AspLEI GCGC 2 cut(s) 48, 79
AspS9I GGNCC 3 cut(s) 133, 811, 959
AsuHPI GGTGA 1 cut(s) 704
AvaII GGWCC 2 cut(s) 133, 959
BaeGI GKGCMC 1 cut(s) 866
BanII GRGCYC 1 cut(s) 233
BbvI GCAGC 4 cut(s) 66, 162, 274, 604
BccI CCATC 3 cut(s) 464, 926, 1147
BceAI ACGGC 1 cut(s) 309
BcgI CGANNNNNNTGC 4 cut(s) 280, 314, 856, 890
BciT130I CCWGG 2 cut(s) 750, 963
BciVI GTATCC 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 1025
BfmI CTRYAG 1 cut(s) 88
BfoI RGCGCY 1 cut(s) 80
BfuI GTATCC 1 cut(s) 511
BisI GCNGC 9 cut(s) 80, 176, 288, 314, 421, 424, 427, 618, 838
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 9 cut(s) 81, 177, 289, 315, 422, 425, 428, 619, 839
Bme1390I CCNGG 2 cut(s) 750, 963
Bme18I GGWCC 2 cut(s) 133, 959
BmgT120I GGNCC 3 cut(s) 133, 811, 959
BmiI GGNNCC 3 cut(s) 678, 960, 985
BmrFI CCNGG 2 cut(s) 750, 963
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 2 cut(s) 342, 769
BmuI ACTGGG 1 cut(s) 265
BplI GAGNNNNNCTC 4 cut(s) 122, 154, 311, 343
BpmI CTGGAG 3 cut(s) 338, 984, 1002
Bpu10I CCTNAGC 1 cut(s) 878
Bpu1102I GCTNAGC 1 cut(s) 105
Bsa29I ATCGAT 1 cut(s) 468
BsaBI GATNNNNATC 2 cut(s) 718, 1096
BsaI GGTCTC 1 cut(s) 1025
BsaJI CCNNGG 1 cut(s) 582
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 749, 879
Bse1I ACTGG 2 cut(s) 260, 509
Bse3DI GCAATG 1 cut(s) 619
Bse8I GATNNNNATC 2 cut(s) 718, 1096
BseBI CCWGG 2 cut(s) 750, 963
BseCI ATCGAT 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 582
BseGI GGATG 1 cut(s) 455
BseJI GATNNNNATC 2 cut(s) 718, 1096
BseLI CCNNNNNNNGG 3 cut(s) 320, 749, 879
BseMI GCAATG 1 cut(s) 619
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 260, 509
BseRI GAGGAG 1 cut(s) 585
BseSI GKGCMC 1 cut(s) 866
BseXI GCAGC 4 cut(s) 66, 162, 274, 604
Bsh1236I CGCG 6 cut(s) 48, 129, 728, 1045, 1102, 1148
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 4 cut(s) 143, 313, 581, 812
BshVI ATCGAT 1 cut(s) 468
BsiEI CGRYCG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 563
BslFI GGGAC 2 cut(s) 25, 79
BslI CCNNNNNNNGG 3 cut(s) 320, 749, 879
BsmAI GTCTC 1 cut(s) 1025
BsmFI GGGAC 2 cut(s) 25, 79
BsnI GGCC 4 cut(s) 143, 313, 581, 812
Bso31I GGTCTC 1 cut(s) 1025
Bsp1286I GDGCHC 2 cut(s) 233, 866
Bsp143I GATC 1 cut(s) 465
Bsp1720I GCTNAGC 1 cut(s) 105
Bsp19I CCATGG 1 cut(s) 582
Bsp68I TCGCGA 1 cut(s) 1148
BspANI GGCC 4 cut(s) 143, 313, 581, 812
BspCNI CTCAG 1 cut(s) 113
BspDI ATCGAT 1 cut(s) 468
BspFNI CGCG 6 cut(s) 48, 129, 728, 1045, 1102, 1148
BspLI GGNNCC 3 cut(s) 678, 960, 985
BspMAI CTGCAG 1 cut(s) 92
BspPI GGATC 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 1025
BsrBI CCGCTC 1 cut(s) 1037
BsrDI GCAATG 1 cut(s) 619
BsrI ACTGG 2 cut(s) 260, 509
BssECI CCNNGG 1 cut(s) 582
BssMI GATC 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 582
Bst2UI CCWGG 2 cut(s) 750, 963
Bst4CI ACNGT 2 cut(s) 62, 251
Bst6I CTCTTC 2 cut(s) 633, 994
BstC8I GCNNGC 3 cut(s) 173, 357, 622
BstDEI CTNAG 4 cut(s) 100, 105, 603, 878
BstDSI CCRYGG 1 cut(s) 582
BstF5I GGATG 1 cut(s) 455
BstFNI CGCG 6 cut(s) 48, 129, 728, 1045, 1102, 1148
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 2 cut(s) 48, 79
BstKTI GATC 1 cut(s) 468
BstMAI GTCTC 1 cut(s) 1025
BstMBI GATC 1 cut(s) 465
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 8 cut(s) 101, 120, 293, 426, 661, 800, 809, 992
BstNI CCWGG 2 cut(s) 750, 963
BstNSI RCATGY 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 748, 961
BstSFI CTRYAG 1 cut(s) 88
BstSLI GKGCMC 1 cut(s) 866
BstUI CGCG 6 cut(s) 48, 129, 728, 1045, 1102, 1148
BstV1I GCAGC 4 cut(s) 66, 162, 274, 604
Bsu15I ATCGAT 1 cut(s) 468
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 4 cut(s) 143, 313, 581, 812
BsuTUI ATCGAT 1 cut(s) 468
BtgI CCRYGG 1 cut(s) 582
BtsCI GGATG 1 cut(s) 455
BtsI GCAGTG 1 cut(s) 943
BtsIMutI CAGTG 1 cut(s) 943
BtuMI TCGCGA 1 cut(s) 1148
Cac8I GCNNGC 3 cut(s) 173, 357, 622
CfoI GCGC 2 cut(s) 48, 79
Cfr13I GGNCC 3 cut(s) 133, 811, 959
ClaI ATCGAT 1 cut(s) 468
CseI GACGC 3 cut(s) 37, 194, 717
Csp6I GTAC 2 cut(s) 85, 1048
CviAII CATG 5 cut(s) 189, 302, 583, 776, 874
CviQI GTAC 2 cut(s) 85, 1048
DdeI CTNAG 4 cut(s) 100, 105, 603, 878
DpnI GATC 1 cut(s) 467
DpnII GATC 1 cut(s) 465
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 2 cut(s) 633, 994
EarI CTCTTC 2 cut(s) 633, 994
EciI GGCGGA 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 582
Eco24I GRGCYC 1 cut(s) 233
Eco31I GGTCTC 1 cut(s) 1025
Eco47I GGWCC 2 cut(s) 133, 959
Eco57I CTGAAG 3 cut(s) 51, 875, 975
EcoO109I RGGNCCY 1 cut(s) 959
EcoRII CCWGG 2 cut(s) 748, 961
EcoT14I CCWWGG 1 cut(s) 582
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 582
FaeI CATG 5 cut(s) 192, 305, 586, 779, 877
FalI AAGNNNNNCTT 4 cut(s) 98, 130, 630, 662
FaqI GGGAC 2 cut(s) 25, 79
FatI CATG 5 cut(s) 188, 301, 582, 775, 873
Fnu4HI GCNGC 9 cut(s) 80, 176, 288, 314, 421, 424, 427, 618, 838
FokI GGATG 1 cut(s) 462
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 9 cut(s) 80, 176, 288, 314, 421, 424, 427, 618, 838
GlaI GCGC 2 cut(s) 47, 78
GluI GCNGC 9 cut(s) 80, 176, 288, 314, 421, 424, 427, 618, 838
GsuI CTGGAG 3 cut(s) 338, 984, 1002
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 4 cut(s) 143, 313, 581, 812
HapII CCGG 1 cut(s) 563
HgaI GACGC 3 cut(s) 37, 194, 717
HhaI GCGC 2 cut(s) 48, 79
Hin1II CATG 5 cut(s) 192, 305, 586, 779, 877
Hin6I GCGC 2 cut(s) 46, 77
HinP1I GCGC 2 cut(s) 46, 77
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 7 cut(s) 26, 98, 607, 714, 818, 857, 1097
HpaI GTTAAC 1 cut(s) 556
HpaII CCGG 1 cut(s) 563
HphI GGTGA 1 cut(s) 704
Hpy166II GTNNAC 2 cut(s) 136, 556
Hpy188I TCNGA 6 cut(s) 31, 481, 502, 676, 733, 1091
Hpy188III TCNNGA 6 cut(s) 539, 854, 893, 911, 981, 1147
Hpy8I GTNNAC 2 cut(s) 136, 556
Hpy99I CGWCG 6 cut(s) 188, 226, 280, 283, 286, 295
HpyAV CCTTC 3 cut(s) 485, 899, 1099
HpyCH4III ACNGT 2 cut(s) 62, 251
HpyCH4IV ACGT 3 cut(s) 275, 754, 1141
HpyCH4V TGCA 4 cut(s) 90, 219, 301, 782
HpyF10VI GCNNNNNNNGC 8 cut(s) 101, 120, 293, 426, 661, 800, 809, 992
HpyF3I CTNAG 4 cut(s) 100, 105, 603, 878
HpySE526I ACGT 3 cut(s) 275, 754, 1141
Hsp92II CATG 5 cut(s) 192, 305, 586, 779, 877
HspAI GCGC 2 cut(s) 46, 77
KspAI GTTAAC 1 cut(s) 556
Kzo9I GATC 1 cut(s) 465
LmnI GCTCC 2 cut(s) 882, 983
Lsp1109I GCAGC 4 cut(s) 66, 162, 274, 604
LweI GCATC 2 cut(s) 342, 769
MaeII ACGT 3 cut(s) 275, 754, 1141
MaeIII GTNAC 1 cut(s) 251
MalI GATC 1 cut(s) 467
MbiI CCGCTC 1 cut(s) 1037
MboI GATC 1 cut(s) 465
MboII GAAGA 9 cut(s) 35, 500, 650, 707, 751, 981, 1069, 1072, 1162
MhlI GDGCHC 2 cut(s) 233, 866
MluCI AATT 2 cut(s) 572, 1131
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 654
MroXI GAANNNNTTC 1 cut(s) 946
MseI TTAA 3 cut(s) 555, 708, 1134
MspA1I CMGCKG 2 cut(s) 316, 1161
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 2 cut(s) 750, 963
MvaI CCWGG 2 cut(s) 750, 963
MvnI CGCG 6 cut(s) 48, 129, 728, 1045, 1102, 1148
MwoI GCNNNNNNNGC 8 cut(s) 101, 120, 293, 426, 661, 800, 809, 992
NcoI CCATGG 1 cut(s) 582
NdeII GATC 1 cut(s) 465
NlaIII CATG 5 cut(s) 192, 305, 586, 779, 877
NlaIV GGNNCC 3 cut(s) 678, 960, 985
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 251
NruI TCGCGA 1 cut(s) 1148
NspI RCATGY 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 946
PfeI GAWTC 6 cut(s) 26, 607, 714, 818, 857, 1097
PfoI TCCNGGA 1 cut(s) 961
PkrI GCNGC 9 cut(s) 81, 177, 289, 315, 422, 425, 428, 619, 839
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PpuMI RGGWCCY 1 cut(s) 959
Psp5II RGGWCCY 1 cut(s) 959
Psp6I CCWGG 2 cut(s) 748, 961
PspGI CCWGG 2 cut(s) 748, 961
PspN4I GGNNCC 3 cut(s) 678, 960, 985
PspPI GGNCC 3 cut(s) 133, 811, 959
PspPPI RGGWCCY 1 cut(s) 959
PstI CTGCAG 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 1161
RruI TCGCGA 1 cut(s) 1148
RsaI GTAC 2 cut(s) 86, 1049
RsaNI GTAC 2 cut(s) 85, 1048
SaqAI TTAA 3 cut(s) 555, 708, 1134
SatI GCNGC 9 cut(s) 80, 176, 288, 314, 421, 424, 427, 618, 838
Sau3AI GATC 1 cut(s) 465
Sau96I GGNCC 3 cut(s) 133, 811, 959
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 750, 963
SduI GDGCHC 2 cut(s) 233, 866
SfaNI GCATC 2 cut(s) 342, 769
SfcI CTRYAG 1 cut(s) 88
SinI GGWCC 2 cut(s) 133, 959
Sse9I AATT 2 cut(s) 572, 1131
StyD4I CCNGG 2 cut(s) 748, 961
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 2 cut(s) 62, 251
TaiI ACGT 3 cut(s) 278, 757, 1144
TaqI TCGA 2 cut(s) 468, 1111
TasI AATT 2 cut(s) 572, 1131
TatI WGTACW 1 cut(s) 84
TauI GCSGC 5 cut(s) 316, 423, 426, 429, 840
TfiI GAWTC 6 cut(s) 26, 607, 714, 818, 857, 1097
Tru1I TTAA 3 cut(s) 555, 708, 1134
Tru9I TTAA 3 cut(s) 555, 708, 1134
TscAI CASTG 1 cut(s) 943
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 4 cut(s) 79, 175, 287, 617
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 5 cut(s) 17, 36, 638, 912, 989
TspGWI ACGGA 2 cut(s) 239, 860
TspRI CASTG 1 cut(s) 943
VpaK11BI GGWCC 2 cut(s) 133, 959
XapI RAATTY 1 cut(s) 572
XceI RCATGY 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.