Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010143

Physical Location & Seq

Genomic Coordinates Reverse (-)

54617398 .. 54620621

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG343400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGATGGTCCTTGTTCATCAAGAAACGATAAGATCTGACCACCTCTCCTCCCACATTTGTGCCTTGCCCTGTTCCAAAGCTACACCAAATAAATACCATCTCCCCAATTCAACCACCCAGAAAACAAGGAAAAAAACAGAGCAAGAAATGAATGGTTTCAAGGAAGAAGACGAACCAGGGCACCAGAACATGGGGCAGCAGAAGCAGCAGCAGCAGAAGAAGAAGAAGAGGCTCTGTGATTACTGTGGAGTCTCCATGGCTCTGCTCTACTGCAGAGCCGACTCTGCTAAGCTCTGTTTCTCTTGTGACAAAGAAGTCCACTCGGCTAATCAGCTTTTCATCAAGCACACTCGGTCACAGCTCTGTGACGCCTGTGACGAAGCCCCTGCTTCTATTTTCTGCTCTACTGAGAGCTCTGTGCTGTGCCAGAACTGTGACTGGGAAAGGCATAATCTGTCGTCAGCGACGGTGCACGATAGGAGGCCGGTGGATGGTTTTACTGGCAACCCTGGGTTGAATGAGCTGCTGGCGTTTGTGGGGTTTGAGAATCTGGATAAGAAAGGTTTGGTTGTTAGTGAGGAGAGTAGCGGTGGTGGTGGGTTTGATGGGTCTGGGCTTGATGGGTCGTTGGGTTTGTCCGAGGGGTTTTCGGATTTTCTGGTTTGGGAAACTCCCTCTGTTGTTAGTCTTGATGATTTGATTGTTTCGAGTCCGGCTCATAAGTTTCAGGCTATGGGGGTTCCTCCTCTGCCCAAGAACCGGAATGCTAAGTGTGGGCGACACAAGGAAGAGATACTGAGTCAGCTTCGGGTAGTAGCAAAGTCTGAACCCAATTTGATGAATGAGGATGTAGATCTTAATTCCTTCATGAGATTCCAATCACCGGAGACTGAGCATAATATGCAATCAGGGGGTTTCTGTACAAATTTTGAACAGGATGCGGAGCCGCTTGCGTTTCCTGCTTATGAGGCACAGGAGTTTGAGGCTAATCATTATGACAAGTCTTCAAGTCAAGATTTCTTCCCAAAAACATTACAGAGGAGCTACCTTCAGGACTGTTCTATGGTTCCTGATTTAAATTCGAATAATGATGGCACTGCAAGTCATGCTAGTGATGGTTTTGGAGGGCAAATGAATTCTGAAGCCTCTTCAGCTTTCCCAAAAGTTCCTTCACATGAATGTACTCTAAATAGAGAGTCTGCACTCTCAAGGTACAAGGAGAAGAAGAAAACAAGGAGGTACGATAAGCACATCAGGTATGAATCAAGGAAGGTTCGAGCAGAAAGTAGGACAAGAATTAAGGGACGTTTTGCAAAGATAGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

442

Amino Acids

49.48

Weight (kDa)

6.36

Isoelectric Point (pI)

60.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	75 - 120	1.5e-06	B-box zinc finger
zf-B_box	PF00643	119 - 162	7.8e-07	B-box zinc finger
CCT	PF06203	398 - 439	4.7e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47890 AT2G47890 AT2G47890
fragaria_vesca	FvH4_2g24910 FvH4_2g24910
malus_domestica	MD03G1277600.v1.1 MD11G1299600.v1.1
prunus_persica	Prupe.8G253900_v2.0.a1 Prupe.8G253900_v2.0.a1
pyrus_communis	pycom03g22100 pycom11g26320
rosa_chinensis	RchiOBHm_Chr6g0292831
rosa_laevigata	RLG00000011989
rosa_multiflora	Rmu_sc0000639.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174670
rosa_rugosa	Rorug06G0230000
rosa_samantha	Rh6AG343300 Rh6BG350500 Rh6CG357500 Rh6DG343400
rosa_wichuraiana	Rw6G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	190
AciI	CCGC	3 cut(s)	588, 941, 947
AcsI	RAATTY	3 cut(s)	925, 1078, 1135
AcuI	CTGAAG	3 cut(s)	1034, 1134, 1161
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	4 cut(s)	922, 1183, 1214, 1241
AfiI	CCNNNNNNNGG	4 cut(s)	190, 491, 759, 883
AgsI	TTSAA	5 cut(s)	111, 160, 517, 932, 1008
AjnI	CCWGG	2 cut(s)	175, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	1153, 1185
AleI	CACNNNNGTG	1 cut(s)	57
AluBI	AGCT	9 cut(s)	80, 292, 334, 361, 414, 523, 805, 1044, 1154
AluI	AGCT	9 cut(s)	80, 292, 334, 361, 414, 523, 805, 1044, 1154
Alw21I	GWGCWC	2 cut(s)	416, 474
Alw26I	GTCTC	2 cut(s)	256, 881
Alw44I	GTGCAC	1 cut(s)	470
AoxI	GGCC	1 cut(s)	482
ApaLI	GTGCAC	1 cut(s)	470
ApeKI	GCWGC	5 cut(s)	196, 205, 208, 211, 523
ApoI	RAATTY	3 cut(s)	925, 1078, 1135
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	873
AsuII	TTCGAA	1 cut(s)	1082
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	2 cut(s)	183, 474
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	416
BbsI	GAAGAC	2 cut(s)	174, 996
Bbv12I	GWGCWC	2 cut(s)	416, 474
BbvI	GCAGC	5 cut(s)	208, 217, 220, 223, 510
BccI	CCATC	6 cut(s)	105, 485, 599, 614, 1085, 1109
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	2 cut(s)	177, 510
BcoDI	GTCTC	2 cut(s)	256, 881
BfaI	CTAG	1 cut(s)	1110
BfmI	CTRYAG	1 cut(s)	271
BglII	AGATCT	2 cut(s)	32, 853
BisI	GCNGC	6 cut(s)	197, 206, 209, 212, 524, 947
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	6 cut(s)	198, 207, 210, 213, 525, 948
Bme1390I	CCNGG	2 cut(s)	177, 510
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	4 cut(s)	182, 741, 945, 1068
BmrFI	CCNGG	2 cut(s)	177, 510
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	1 cut(s)	928
BmuI	ACTGGG	1 cut(s)	448
BpiI	GAAGAC	2 cut(s)	174, 996
BplI	GAGNNNNNCTC	2 cut(s)	700, 732
Bpu1102I	GCTNAGC	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	1082
BpuEI	CTTGAG	1 cut(s)	1192
BsaBI	GATNNNNATC	2 cut(s)	852, 877
BsaHI	GRCGYC	1 cut(s)	369
BsaJI	CCNNGG	5 cut(s)	176, 255, 508, 509, 639
BsaWI	WCCGGW	2 cut(s)	759, 883
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 32, 59, 62
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 491, 759, 883
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	2 cut(s)	443, 505
Bse8I	GATNNNNATC	2 cut(s)	852, 877
BseBI	CCWGG	2 cut(s)	177, 510
BseDI	CCNNGG	5 cut(s)	176, 255, 508, 509, 639
BseGI	GGATG	3 cut(s)	496, 853, 943
BseJI	GATNNNNATC	2 cut(s)	852, 877
BseLI	CCNNNNNNNGG	4 cut(s)	190, 491, 759, 883
BseMII	CTCAG	3 cut(s)	399, 788, 882
BseNI	ACTGG	2 cut(s)	443, 505
BseRI	GAGGAG	4 cut(s)	37, 593, 735, 1054
BseSI	GKGCMC	2 cut(s)	183, 474
BseXI	GCAGC	5 cut(s)	208, 217, 220, 223, 510
BsgI	GTGCAG	1 cut(s)	1185
BshFI	GGCC	1 cut(s)	484
BshNI	GGYRCC	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	416, 474
BsiSI	CCGG	4 cut(s)	485, 713, 760, 884
BslFI	GGGAC	1 cut(s)	1317
BslI	CCNNNNNNNGG	4 cut(s)	190, 491, 759, 883
BsmAI	GTCTC	2 cut(s)	256, 881
BsmFI	GGGAC	1 cut(s)	1317
BsmI	GAATGC	1 cut(s)	769
BsnI	GGCC	1 cut(s)	484
Bsp119I	TTCGAA	1 cut(s)	1082
Bsp1286I	GDGCHC	3 cut(s)	183, 416, 474
Bsp1407I	TGTACA	1 cut(s)	920
Bsp143I	GATC	2 cut(s)	32, 853
Bsp1720I	GCTNAGC	1 cut(s)	288
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	3 cut(s)	588, 941, 947
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	3 cut(s)	400, 789, 883
BspHI	TCATGA	1 cut(s)	867
BspLI	GGNNCC	4 cut(s)	182, 741, 945, 1068
BspMAI	CTGCAG	1 cut(s)	275
BspT104I	TTCGAA	1 cut(s)	1082
BspT107I	GGYRCC	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	484
BsrGI	TGTACA	1 cut(s)	920
BsrI	ACTGG	2 cut(s)	443, 505
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	5 cut(s)	176, 255, 508, 509, 639
BssMI	GATC	2 cut(s)	32, 853
BssNI	GRCGYC	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	2 cut(s)	177, 510
Bst4CI	ACNGT	4 cut(s)	245, 434, 469, 1058
Bst6I	CTCTTC	3 cut(s)	221, 783, 1153
BstACI	GRCGYC	1 cut(s)	369
BstAPI	GCANNNNNTGC	2 cut(s)	901, 1106
BstAUI	TGTACA	1 cut(s)	920
BstBI	TTCGAA	1 cut(s)	1082
BstC8I	GCNNGC	2 cut(s)	528, 951
BstDEI	CTNAG	5 cut(s)	288, 408, 768, 797, 891
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	3 cut(s)	496, 853, 943
BstKTI	GATC	2 cut(s)	35, 856
BstMAI	GTCTC	2 cut(s)	256, 881
BstMBI	GATC	2 cut(s)	32, 853
BstMWI	GCNNNNNNNGC	9 cut(s)	202, 205, 211, 284, 901, 959, 968, 1106, 1151
BstNI	CCWGG	2 cut(s)	177, 510
BstSCI	CCNGG	2 cut(s)	175, 508
BstSFI	CTRYAG	1 cut(s)	271
BstSLI	GKGCMC	2 cut(s)	183, 474
BstV1I	GCAGC	5 cut(s)	208, 217, 220, 223, 510
BstV2I	GAAGAC	2 cut(s)	174, 996
BstX2I	RGATCY	2 cut(s)	32, 853
BstYI	RGATCY	2 cut(s)	32, 853
BsuRI	GGCC	1 cut(s)	484
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	3 cut(s)	496, 853, 943
BtsI	GCAGTG	1 cut(s)	1095
BtsIMutI	CAGTG	1 cut(s)	1095
Cac8I	GCNNGC	2 cut(s)	528, 951
CciI	TCATGA	1 cut(s)	867
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	4 cut(s)	921, 1182, 1213, 1240
CviAII	CATG	5 cut(s)	190, 256, 868, 1106, 1175
CviQI	GTAC	4 cut(s)	921, 1182, 1213, 1240
DdeI	CTNAG	5 cut(s)	288, 408, 768, 797, 891
DpnI	GATC	2 cut(s)	34, 855
DpnII	GATC	2 cut(s)	32, 853
DraI	TTTAAA	1 cut(s)	1077
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
Eam1104I	CTCTTC	3 cut(s)	221, 783, 1153
EarI	CTCTTC	3 cut(s)	221, 783, 1153
Ecl136II	GAGCTC	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	416
Eco47I	GGWCC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	414
Eco57I	CTGAAG	3 cut(s)	1034, 1134, 1161
EcoICRI	GAGCTC	1 cut(s)	414
EcoRI	GAATTC	1 cut(s)	1135
EcoRII	CCWGG	2 cut(s)	175, 508
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	5 cut(s)	193, 259, 871, 1109, 1178
FaqI	GGGAC	1 cut(s)	1317
FatI	CATG	5 cut(s)	189, 255, 867, 1105, 1174
Fnu4HI	GCNGC	6 cut(s)	197, 206, 209, 212, 524, 947
FokI	GGATG	3 cut(s)	503, 860, 950
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	6 cut(s)	197, 206, 209, 212, 524, 947
FspBI	CTAG	1 cut(s)	1110
GluI	GCNGC	6 cut(s)	197, 206, 209, 212, 524, 947
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	4 cut(s)	485, 713, 760, 884
HgaI	GACGC	1 cut(s)	377
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	5 cut(s)	193, 259, 871, 1109, 1178
HinfI	GANTC	8 cut(s)	249, 281, 547, 709, 799, 873, 1196, 1262
HpaII	CCGG	4 cut(s)	485, 713, 760, 884
HphI	GGTGA	1 cut(s)	873
Hpy166II	GTNNAC	2 cut(s)	319, 472
Hpy188I	TCNGA	5 cut(s)	37, 640, 652, 826, 1141
Hpy188III	TCNNGA	7 cut(s)	20, 551, 689, 868, 1013, 1052, 1070
Hpy8I	GTNNAC	2 cut(s)	319, 472
Hpy99I	CGWCG	1 cut(s)	469
HpyAV	CCTTC	4 cut(s)	874, 1058, 1179, 1264
HpyCH4III	ACNGT	4 cut(s)	245, 434, 469, 1058
HpyCH4IV	ACGT	1 cut(s)	1306
HpyCH4V	TGCA	6 cut(s)	273, 472, 904, 1100, 1202, 1313
HpyF10VI	GCNNNNNNNGC	9 cut(s)	202, 205, 211, 284, 901, 959, 968, 1106, 1151
HpyF3I	CTNAG	5 cut(s)	288, 408, 768, 797, 891
HpySE526I	ACGT	1 cut(s)	1306
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	5 cut(s)	193, 259, 871, 1109, 1178
Kzo9I	GATC	2 cut(s)	32, 853
LmnI	GCTCC	2 cut(s)	943, 1041
Lsp1109I	GCAGC	5 cut(s)	208, 217, 220, 223, 510
LweI	GCATC	1 cut(s)	928
MaeI	CTAG	1 cut(s)	1110
MaeII	ACGT	1 cut(s)	1306
MaeIII	GTNAC	5 cut(s)	305, 354, 365, 374, 434
MalI	GATC	2 cut(s)	34, 855
MboI	GATC	2 cut(s)	32, 853
MflI	RGATCY	2 cut(s)	32, 853
MhlI	GDGCHC	3 cut(s)	183, 416, 474
MluCI	AATT	7 cut(s)	106, 832, 859, 925, 1078, 1135, 1296
MlyI	GAGTC	5 cut(s)	258, 275, 718, 808, 1205
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	3 cut(s)	858, 1076, 1299
MslI	CAYNNNNRTG	3 cut(s)	57, 1110, 1177
MspI	CCGG	4 cut(s)	485, 713, 760, 884
MspR9I	CCNGG	2 cut(s)	177, 510
Mva1269I	GAATGC	1 cut(s)	769
MvaI	CCWGG	2 cut(s)	177, 510
MwoI	GCNNNNNNNGC	9 cut(s)	202, 205, 211, 284, 901, 959, 968, 1106, 1151
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	2 cut(s)	32, 853
NlaIII	CATG	5 cut(s)	193, 259, 871, 1109, 1178
NlaIV	GGNNCC	4 cut(s)	182, 741, 945, 1068
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	5 cut(s)	305, 354, 365, 374, 434
NspV	TTCGAA	1 cut(s)	1082
OliI	CACNNNNGTG	1 cut(s)	57
PagI	TCATGA	1 cut(s)	867
PasI	CCCWGGG	1 cut(s)	509
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PctI	GAATGC	1 cut(s)	769
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	547, 873, 1262
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	6 cut(s)	198, 207, 210, 213, 525, 948
PleI	GAGTC	5 cut(s)	257, 275, 717, 807, 1204
PpsI	GAGTC	5 cut(s)	257, 275, 717, 807, 1204
Psp124BI	GAGCTC	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	175, 508
PspGI	CCWGG	2 cut(s)	175, 508
PspN4I	GGNNCC	4 cut(s)	182, 741, 945, 1068
PspPI	GGNCC	1 cut(s)	7
PstI	CTGCAG	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	32, 853
RsaI	GTAC	4 cut(s)	922, 1183, 1214, 1241
RsaNI	GTAC	4 cut(s)	921, 1182, 1213, 1240
RseI	CAYNNNNRTG	3 cut(s)	57, 1110, 1177
SacI	GAGCTC	1 cut(s)	416
SaqAI	TTAA	3 cut(s)	858, 1076, 1299
SatI	GCNGC	6 cut(s)	197, 206, 209, 212, 524, 947
Sau3AI	GATC	2 cut(s)	32, 853
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	5 cut(s)	258, 275, 718, 808, 1205
ScrFI	CCNGG	2 cut(s)	177, 510
SduI	GDGCHC	3 cut(s)	183, 416, 474
SfaNI	GCATC	1 cut(s)	928
SfcI	CTRYAG	1 cut(s)	271
SfuI	TTCGAA	1 cut(s)	1082
SinI	GGWCC	1 cut(s)	7
SmiI	ATTTAAAT	1 cut(s)	1077
SmiMI	CAYNNNNRTG	3 cut(s)	57, 1110, 1177
SmlI	CTYRAG	1 cut(s)	1207
SmoI	CTYRAG	1 cut(s)	1207
Sse9I	AATT	7 cut(s)	106, 832, 859, 925, 1078, 1135, 1296
SsiI	CCGC	3 cut(s)	588, 941, 947
SspMI	CTAG	1 cut(s)	1110
SstI	GAGCTC	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	175, 508
StyI	CCWWGG	1 cut(s)	255
SwaI	ATTTAAAT	1 cut(s)	1077
TaaI	ACNGT	4 cut(s)	245, 434, 469, 1058
TaiI	ACGT	1 cut(s)	1309
TaqI	TCGA	3 cut(s)	707, 1082, 1276
TaqII	GACCGA	1 cut(s)	342
TasI	AATT	7 cut(s)	106, 832, 859, 925, 1078, 1135, 1296
TatI	WGTACW	2 cut(s)	920, 1181
TauI	GCSGC	1 cut(s)	949
TfiI	GAWTC	3 cut(s)	547, 873, 1262
Tru1I	TTAA	3 cut(s)	858, 1076, 1299
Tru9I	TTAA	3 cut(s)	858, 1076, 1299
TscAI	CASTG	1 cut(s)	1102
TseFI	GTSAC	5 cut(s)	305, 354, 365, 374, 434
TseI	GCWGC	5 cut(s)	196, 205, 208, 211, 523
Tsp45I	GTSAC	5 cut(s)	305, 354, 365, 374, 434
TspDTI	ATGAA	8 cut(s)	5, 164, 328, 854, 856, 1148, 1191, 1275
TspRI	CASTG	1 cut(s)	1102
Van91I	CCANNNNNTGG	1 cut(s)	190
VneI	GTGCAC	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	3 cut(s)	925, 1078, 1135
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.