Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010143

Physical Location & Seq

Genomic Coordinates Reverse (-)

35979798 .. 35982715

Gene Structure 2918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1277600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGAGAAAATTAATGGTGGTACGAGAAATGAAGAACCTGGAGCGACCCAGAAGCGCGTCTGTGATTACTGTGGGACTTCAATGGCGCTGCTGTACTGCAGAGCGGACTCCGCCAAGCTCTGCTTCTCCTGCGACCGCGAGGTCCACTCGGCCAATCAACTTTTCACGAAGCACACTCGCTCGCTGCTCTGCGACGCATGTGATAAATCCCCTGCCTCCATTTTTTGCACGACGGAGGGCTCTGTTCTGTGCCAGAACTGTGACTGGGAAAGCCACAACATTTCGTCGTCCGCGGCGGCAACGGCCGTGCACGATAGGAGGCCGCTGGAGGGGTTTTCTGGGTGTCCTTGTTTGAGTGAGTTGCTTGCGTTTGTTGGGTTTGAGAATATGGATAAAAAAGCTCTGCTTTTGAGTGATGAGGGCGGCGGCGGAGGTGGTGGTGGGTTTTTGGGATGTGGGGTTGATGGCTTTTCGGATTTGGAAGATGGGTTTTCAGACTTTCTGGTTTGGGATACTCCCTCTGTTATTAGTCTTGATGATTTGATCGTTAGCAATCCGGCTTACAAATTTCAGGCCATGGGAGTTCCTCCTCTGCCTAAGAATCGCAATGCTGCTTGTGGCCAACACAAGGAAGAGATAATTCATCAGCTTCGTCTGCTTGTCAAGTCGGAACCCAACCTGTTTAGCGAAGATGTGGATGTTAAATCTCTCAAGGGATTCCAATTCCTCGCGTCCAAACAAAATACGCAACCAGGAAGCTTCCTCACAGGTTTTGGATATGATACAGAGCCAACTGCATTTCCTGCGCAGGAGGCACATGAATCGCAGTATAATGGTTGCAAGGCTGCAAATCATGATTCGTGCCCGAAAACATCAATGAGGAGCTACCTTCAGGACTGCTGTGTAGCTCCTGACAAACATTCGTACAACGATGGCACTGGAAGTCGTGCTAACGAGGGTCATGGAGGGCAAATGAACTCTGAAGCCTCTGCAGGTTTTCCGAAAGTTGTTCCACATGAGATAAGTTGTCAAAACAGAGAGACCGCTCTCTCACGGTACAAGGAGAAGAAGAAAACAAGGAGGTATGAGAAACAAATCAGATACGAATCACGGAAGGTTCGAGCAGAAAGTAGGACGAGAATTAAAGGACGTTTCGCGAAGATGGATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

391

Amino Acids

42.82

Weight (kDa)

6.6

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	17 - 61	5e-07	B-box zinc finger
zf-B_box	PF00643	61 - 108	2.5e-07	B-box zinc finger
CCT	PF06203	346 - 388	4.8e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47890 AT2G47890 AT2G47890
fragaria_vesca	FvH4_2g24910 FvH4_2g24910
malus_domestica	MD03G1277600.v1.1 MD11G1299600.v1.1
prunus_persica	Prupe.8G253900_v2.0.a1 Prupe.8G253900_v2.0.a1
pyrus_communis	pycom03g22100 pycom11g26320
rosa_chinensis	RchiOBHm_Chr6g0292831
rosa_laevigata	RLG00000011989
rosa_multiflora	Rmu_sc0000639.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174670
rosa_rugosa	Rorug06G0230000
rosa_samantha	Rh6AG343300 Rh6BG350500 Rh6CG357500 Rh6DG343400
rosa_wichuraiana	Rw6G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
Acc16I	TGCGCA	1 cut(s)	807
Acc36I	ACCTGC	1 cut(s)	983
AccBSI	CCGCTC	2 cut(s)	104, 1046
AccII	CGCG	5 cut(s)	57, 138, 293, 731, 1157
AcoI	YGGCCR	3 cut(s)	150, 303, 619
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	2 cut(s)	875, 1002
AfaI	GTAC	4 cut(s)	22, 95, 926, 1058
AfiI	CCNNNNNNNGG	2 cut(s)	329, 628
AgsI	TTSAA	1 cut(s)	81
AjnI	CCWGG	2 cut(s)	37, 751
AjuI	GAANNNNNNNTTGG	4 cut(s)	107, 139, 146, 178
AluBI	AGCT	6 cut(s)	118, 401, 649, 759, 885, 908
AluI	AGCT	6 cut(s)	118, 401, 649, 759, 885, 908
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	1034
Alw44I	GTGCAC	1 cut(s)	308
AoxI	GGCC	5 cut(s)	150, 303, 320, 573, 619
ApaLI	GTGCAC	1 cut(s)	308
ApeKI	GCWGC	4 cut(s)	88, 184, 611, 845
ApoI	RAATTY	1 cut(s)	566
AseI	ATTAAT	1 cut(s)	12
AspLEI	GCGC	3 cut(s)	57, 88, 808
AspS9I	GGNCC	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	142
BaeGI	GKGCMC	2 cut(s)	312, 866
BalI	TGGCCA	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	4 cut(s)	75, 171, 598, 832
BccI	CCATC	4 cut(s)	458, 479, 926, 1156
BceAI	ACGGC	2 cut(s)	290, 318
BcgI	CGANNNNNNTGC	2 cut(s)	804, 838
BciT130I	CCWGG	2 cut(s)	39, 753
BciVI	GTATCC	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	1034
BfmI	CTRYAG	2 cut(s)	97, 990
BfoI	RGCGCY	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	983
BfuI	GTATCC	1 cut(s)	505
BisI	GCNGC	9 cut(s)	89, 185, 294, 297, 323, 424, 427, 612, 846
BlsI	GCNGC	9 cut(s)	90, 186, 295, 298, 324, 425, 428, 613, 847
Bme1390I	CCNGG	2 cut(s)	39, 753
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	672
BmrFI	CCNGG	2 cut(s)	39, 753
BmrI	ACTGGG	1 cut(s)	274
BmuI	ACTGGG	1 cut(s)	274
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
BpmI	CTGGAG	2 cut(s)	60, 347
BpuEI	CTTGAG	1 cut(s)	695
BsaBI	GATNNNNATC	1 cut(s)	1105
BsaI	GGTCTC	1 cut(s)	1034
BsaJI	CCNNGG	2 cut(s)	291, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 628
Bse1I	ACTGG	2 cut(s)	269, 943
Bse3DI	GCAATG	1 cut(s)	613
Bse8I	GATNNNNATC	1 cut(s)	1105
BseBI	CCWGG	2 cut(s)	39, 753
BseDI	CCNNGG	2 cut(s)	291, 576
BseGI	GGATG	2 cut(s)	458, 703
BseJI	GATNNNNATC	1 cut(s)	1105
BseLI	CCNNNNNNNGG	2 cut(s)	329, 628
BseMI	GCAATG	1 cut(s)	613
BseNI	ACTGG	2 cut(s)	269, 943
BseRI	GAGGAG	2 cut(s)	579, 895
BseSI	GKGCMC	2 cut(s)	312, 866
BseX3I	CGGCCG	1 cut(s)	303
BseXI	GCAGC	4 cut(s)	75, 171, 598, 832
Bsh1236I	CGCG	5 cut(s)	57, 138, 293, 731, 1157
Bsh1285I	CGRYCG	2 cut(s)	136, 306
BshFI	GGCC	5 cut(s)	152, 305, 322, 575, 621
BsiEI	CGRYCG	2 cut(s)	136, 306
BsiHKAI	GWGCWC	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	557
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	2 cut(s)	329, 628
BsmAI	GTCTC	1 cut(s)	1034
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	5 cut(s)	152, 305, 322, 575, 621
Bso31I	GGTCTC	1 cut(s)	1034
Bsp1286I	GDGCHC	3 cut(s)	242, 312, 866
Bsp143I	GATC	2 cut(s)	543, 1165
Bsp19I	CCATGG	1 cut(s)	576
Bsp68I	TCGCGA	1 cut(s)	1157
BspANI	GGCC	5 cut(s)	152, 305, 322, 575, 621
BspFNI	CGCG	5 cut(s)	57, 138, 293, 731, 1157
BspHI	TCATGA	1 cut(s)	853
BspLI	GGNNCC	1 cut(s)	672
BspMAI	CTGCAG	2 cut(s)	101, 994
BspMI	ACCTGC	1 cut(s)	983
BspTNI	GGTCTC	1 cut(s)	1034
BsrBI	CCGCTC	2 cut(s)	104, 1046
BsrDI	GCAATG	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	269, 943
BssECI	CCNNGG	2 cut(s)	291, 576
BssMI	GATC	2 cut(s)	543, 1165
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	2 cut(s)	39, 753
Bst4CI	ACNGT	3 cut(s)	71, 260, 1056
Bst6I	CTCTTC	1 cut(s)	627
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstC8I	GCNNGC	2 cut(s)	182, 366
BstDEI	CTNAG	1 cut(s)	597
BstDSI	CCRYGG	2 cut(s)	291, 576
BstF5I	GGATG	2 cut(s)	458, 703
BstFNI	CGCG	5 cut(s)	57, 138, 293, 731, 1157
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	3 cut(s)	57, 88, 808
BstKTI	GATC	2 cut(s)	546, 1168
BstMAI	GTCTC	1 cut(s)	1034
BstMBI	GATC	2 cut(s)	543, 1165
BstMCI	CGRYCG	2 cut(s)	136, 306
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 129, 302, 655, 803, 812
BstNI	CCWGG	2 cut(s)	39, 753
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	37, 751
BstSFI	CTRYAG	2 cut(s)	97, 990
BstSLI	GKGCMC	2 cut(s)	312, 866
BstUI	CGCG	5 cut(s)	57, 138, 293, 731, 1157
BstV1I	GCAGC	4 cut(s)	75, 171, 598, 832
BstZI	CGGCCG	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	505
BsuRI	GGCC	5 cut(s)	152, 305, 322, 575, 621
BtgI	CCRYGG	2 cut(s)	291, 576
BtsCI	GGATG	2 cut(s)	458, 703
BtsIMutI	CAGTG	1 cut(s)	936
BtuMI	TCGCGA	1 cut(s)	1157
BveI	ACCTGC	1 cut(s)	983
Cac8I	GCNNGC	2 cut(s)	182, 366
CciI	TCATGA	1 cut(s)	853
CfoI	GCGC	3 cut(s)	57, 88, 808
Cfr13I	GGNCC	1 cut(s)	142
Cfr42I	CCGCGG	1 cut(s)	294
CseI	GACGC	3 cut(s)	46, 203, 720
Csp6I	GTAC	4 cut(s)	21, 94, 925, 1057
CviAII	CATG	6 cut(s)	198, 577, 818, 854, 962, 1016
CviQI	GTAC	4 cut(s)	21, 94, 925, 1057
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	2 cut(s)	545, 1167
DpnII	GATC	2 cut(s)	543, 1165
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	3 cut(s)	150, 303, 619
EagI	CGGCCG	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
EciI	GGCGGA	2 cut(s)	100, 444
EclXI	CGGCCG	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	242
Eco31I	GGTCTC	1 cut(s)	1034
Eco47I	GGWCC	1 cut(s)	142
Eco52I	CGGCCG	1 cut(s)	303
Eco57I	CTGAAG	2 cut(s)	875, 1002
EcoRII	CCWGG	2 cut(s)	37, 751
EcoT14I	CCWWGG	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	6 cut(s)	201, 580, 821, 857, 965, 1019
FalI	AAGNNNNNCTT	4 cut(s)	107, 139, 390, 422
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	6 cut(s)	197, 576, 817, 853, 961, 1015
Fnu4HI	GCNGC	9 cut(s)	89, 185, 294, 297, 323, 424, 427, 612, 846
FokI	GGATG	2 cut(s)	465, 710
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	9 cut(s)	89, 185, 294, 297, 323, 424, 427, 612, 846
FspI	TGCGCA	1 cut(s)	807
GlaI	GCGC	3 cut(s)	56, 87, 807
GluI	GCNGC	9 cut(s)	89, 185, 294, 297, 323, 424, 427, 612, 846
GsuI	CTGGAG	2 cut(s)	60, 347
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	5 cut(s)	152, 305, 322, 575, 621
HapII	CCGG	1 cut(s)	557
HgaI	GACGC	3 cut(s)	46, 203, 720
HhaI	GCGC	3 cut(s)	57, 88, 808
Hin1II	CATG	6 cut(s)	201, 580, 821, 857, 965, 1019
Hin6I	GCGC	3 cut(s)	55, 86, 806
HinP1I	GCGC	3 cut(s)	55, 86, 806
HindIII	AAGCTT	1 cut(s)	757
HinfI	GANTC	6 cut(s)	107, 601, 717, 821, 857, 1106
HpaII	CCGG	1 cut(s)	557
Hpy166II	GTNNAC	2 cut(s)	145, 310
Hpy188I	TCNGA	6 cut(s)	475, 496, 670, 982, 1002, 1100
Hpy188III	TCNNGA	6 cut(s)	166, 533, 854, 893, 911, 1156
Hpy8I	GTNNAC	2 cut(s)	145, 310
Hpy99I	CGWCG	3 cut(s)	197, 235, 289
HpyAV	CCTTC	2 cut(s)	899, 1108
HpyCH4III	ACNGT	3 cut(s)	71, 260, 1056
HpyCH4IV	ACGT	1 cut(s)	1150
HpyCH4V	TGCA	7 cut(s)	99, 228, 310, 797, 840, 848, 992
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 129, 302, 655, 803, 812
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	1 cut(s)	1150
Hsp92II	CATG	6 cut(s)	201, 580, 821, 857, 965, 1019
HspAI	GCGC	3 cut(s)	55, 86, 806
KspI	CCGCGG	1 cut(s)	294
Kzo9I	GATC	2 cut(s)	543, 1165
LmnI	GCTCC	3 cut(s)	41, 882, 913
Lsp1109I	GCAGC	4 cut(s)	75, 171, 598, 832
MaeII	ACGT	1 cut(s)	1150
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	2 cut(s)	545, 1167
MbiI	CCGCTC	2 cut(s)	104, 1046
MboI	GATC	2 cut(s)	543, 1165
MboII	GAAGA	7 cut(s)	44, 494, 644, 701, 1078, 1081, 1171
MhlI	GDGCHC	3 cut(s)	242, 312, 866
MlsI	TGGCCA	1 cut(s)	621
MluCI	AATT	5 cut(s)	9, 566, 639, 722, 1140
MluNI	TGGCCA	1 cut(s)	621
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	648
Mox20I	TGGCCA	1 cut(s)	621
MscI	TGGCCA	1 cut(s)	621
MseI	TTAA	3 cut(s)	12, 702, 1143
Msp20I	TGGCCA	1 cut(s)	621
MspA1I	CMGCKG	2 cut(s)	293, 325
MspI	CCGG	1 cut(s)	557
MspR9I	CCNGG	2 cut(s)	39, 753
MvaI	CCWGG	2 cut(s)	39, 753
MvnI	CGCG	5 cut(s)	57, 138, 293, 731, 1157
MwoI	GCNNNNNNNGC	6 cut(s)	110, 129, 302, 655, 803, 812
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	2 cut(s)	543, 1165
NlaIII	CATG	6 cut(s)	201, 580, 821, 857, 965, 1019
NlaIV	GGNNCC	1 cut(s)	672
NmeAIII	GCCGAG	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	260
NruI	TCGCGA	1 cut(s)	1157
NsbI	TGCGCA	1 cut(s)	807
NspI	RCATGY	1 cut(s)	201
PagI	TCATGA	1 cut(s)	853
PcsI	WCGNNNNNNNCGW	1 cut(s)	1117
PfeI	GAWTC	5 cut(s)	601, 717, 821, 857, 1106
PkrI	GCNGC	9 cut(s)	90, 186, 295, 298, 324, 425, 428, 613, 847
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PshBI	ATTAAT	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	37, 751
PspGI	CCWGG	2 cut(s)	37, 751
PspN4I	GGNNCC	1 cut(s)	672
PspPI	GGNCC	1 cut(s)	142
PstI	CTGCAG	2 cut(s)	101, 994
RruI	TCGCGA	1 cut(s)	1157
RsaI	GTAC	4 cut(s)	22, 95, 926, 1058
RsaNI	GTAC	4 cut(s)	21, 94, 925, 1057
SacII	CCGCGG	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	12, 702, 1143
SatI	GCNGC	9 cut(s)	89, 185, 294, 297, 323, 424, 427, 612, 846
Sau3AI	GATC	2 cut(s)	543, 1165
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	39, 753
SduI	GDGCHC	3 cut(s)	242, 312, 866
SfcI	CTRYAG	2 cut(s)	97, 990
Sfr303I	CCGCGG	1 cut(s)	294
SgrBI	CCGCGG	1 cut(s)	294
SinI	GGWCC	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	5 cut(s)	9, 566, 639, 722, 1140
StyD4I	CCNGG	2 cut(s)	37, 751
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	3 cut(s)	71, 260, 1056
TaiI	ACGT	1 cut(s)	1153
TaqI	TCGA	1 cut(s)	1120
TasI	AATT	5 cut(s)	9, 566, 639, 722, 1140
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	5 cut(s)	296, 299, 325, 426, 429
TfiI	GAWTC	5 cut(s)	601, 717, 821, 857, 1106
Tru1I	TTAA	3 cut(s)	12, 702, 1143
Tru9I	TTAA	3 cut(s)	12, 702, 1143
TscAI	CASTG	1 cut(s)	943
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	4 cut(s)	88, 184, 611, 845
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	4 cut(s)	45, 632, 834, 989
TspGWI	ACGGA	2 cut(s)	248, 1126
TspRI	CASTG	1 cut(s)	943
VneI	GTGCAC	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	142
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	1 cut(s)	566
XceI	RCATGY	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.