Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010143

Physical Location & Seq

Genomic Coordinates Reverse (-)

20252750 .. 20254655

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24910.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAATGGTTTCAAGGAGGGGGAAGAAGAAGCAGGGCAGCAGAACATGGGGGCCCAGAAGAAGCAGCAGCAGCAGAAGAAGAAGAGGGTTTGTGATTACTGTGGAGTTTCCATGGCTCTGCTTTACTGCAGAGCCGACTCTGCTAAGCTGTGTTTCTCTTGTGACAAAGAAGTCCACTCGGCTAATCAGCTTTTCGTGAAGCATACGAGGTCACAGCTCTGTGACGCTTGTGATGAAGCCTCTGCTTCTATATTTTGCTCCACTGAGAGCTCTGTGCTGTGTCAGAACTGTGACTGGGAAAGGCATAATCTGTCGTCGGCGACGGTGCACGATAGGAGGCCGGTGGAGGGGTTTACTGGGAACCCTGGGTTGAATGAGCTTTTGGCTTTTGTGGGGTTTGAGAATTTGGATAAGAAGGGTTTGGTGTTTAGTGAGGAGAGTAGCGGTGGTGGTGGTGATGGTGGTGGGTTTGATGGGTCTGGGCTTGATGAGTCGCTGGGTTTGTGTGATGGTTTTTCGGATTTTCTGGTTTGGGAAACTCCCTCTGTTGTTAGTCTTGATGATTTGATTGTTTCCAATCCGGGTCATAAGTTTCAGGCTATGGGGGTTCCCCCTCTGCCTAAGAACCGGAATGCTAAGTGTGGACGACATAAGGAAGAGATACTGAGTCAGCTTCGGGTAGTAGCGAAGTCGGAACCCAATTTGATGAATGAGGATGTGGATCTTAATTCCTTCATGAGTTTCCAATCACCGGAGACTGAGCAACATATGCAATCAGGGGGTTTCTGTACAAGTTTCGAACAGCTTGCATTTCCTGCTTATGAGGCACAAGAGTTTGAGGCTAATGATTGTGGCAAGTCAAGTGAAGATTTTTTCCATAAAGGATTGAAGAGAAGCTACCTTCAGGACTGTTCTATGGTTCCTGATTTAAATTCTAACAATGATGGCACTGCGAGTCATGCTAGTGATGGTTTTGGAGGGCAAATGATTTGTGAAGCCTCTTCAGCTTACCCGAAAGTTCCTTCACATGAATGTACTATAAATAGGGAGTCTGCTCTCACAAGGTACAAGGAGAAGAAGAAAACAAGGAGGTATGATAAGCACATCAGATATGAATCACGGAAGGTTCGGGCAGAAAGTAGGACAAGAATTAAGGGACGTTTTGCAAAAATAGATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

394

Amino Acids

43.58

Weight (kDa)

5.74

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	27 - 72	1.2e-06	B-box zinc finger
zf-B_box	PF00643	71 - 114	6e-06	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47890 AT2G47890 AT2G47890
fragaria_vesca	FvH4_2g24910 FvH4_2g24910
malus_domestica	MD03G1277600.v1.1 MD11G1299600.v1.1
prunus_persica	Prupe.8G253900_v2.0.a1 Prupe.8G253900_v2.0.a1
pyrus_communis	pycom03g22100 pycom11g26320
rosa_chinensis	RchiOBHm_Chr6g0292831
rosa_laevigata	RLG00000011989
rosa_multiflora	Rmu_sc0000639.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174670
rosa_rugosa	Rorug06G0230000
rosa_samantha	Rh6AG343300 Rh6BG350500 Rh6CG357500 Rh6DG343400
rosa_wichuraiana	Rw6G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AciI	CCGC	1 cut(s)	444
AclWI	GGATC	1 cut(s)	729
AcsI	RAATTY	2 cut(s)	403, 931
AcuI	CTGAAG	2 cut(s)	887, 987
AfaI	GTAC	3 cut(s)	790, 1036, 1067
AfiI	CCNNNNNNNGG	2 cut(s)	347, 751
AgsI	TTSAA	3 cut(s)	13, 373, 889
AjnI	CCWGG	1 cut(s)	364
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	9 cut(s)	148, 190, 217, 270, 379, 673, 805, 897, 1007
AluI	AGCT	9 cut(s)	148, 190, 217, 270, 379, 673, 805, 897, 1007
Alw21I	GWGCWC	2 cut(s)	272, 330
Alw26I	GTCTC	1 cut(s)	749
Alw44I	GTGCAC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	729
AoxI	GGCC	2 cut(s)	51, 338
ApaI	GGGCCC	1 cut(s)	55
ApaLI	GTGCAC	1 cut(s)	326
ApeKI	GCWGC	4 cut(s)	37, 64, 67, 70
ApoI	RAATTY	2 cut(s)	403, 931
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	51, 52
AsuC2I	CCSGG	1 cut(s)	582
AsuHPI	GGTGA	2 cut(s)	467, 741
AsuII	TTCGAA	1 cut(s)	798
BaeGI	GKGCMC	2 cut(s)	55, 330
BanII	GRGCYC	2 cut(s)	55, 272
BarI	GAAGNNNNNNTAC	2 cut(s)	881, 913
Bbv12I	GWGCWC	2 cut(s)	272, 330
BbvI	GCAGC	4 cut(s)	49, 76, 79, 82
BccI	CCATC	5 cut(s)	452, 467, 503, 938, 962
BcgI	CGANNNNNNTGC	2 cut(s)	788, 822
BciT130I	CCWGG	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	582
BcoDI	GTCTC	1 cut(s)	749
BfaI	CTAG	1 cut(s)	963
BfmI	CTRYAG	1 cut(s)	127
BisI	GCNGC	4 cut(s)	38, 65, 68, 71
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	4 cut(s)	39, 66, 69, 72
Bme1390I	CCNGG	2 cut(s)	366, 582
BmgT120I	GGNCC	2 cut(s)	51, 52
BmiI	GGNNCC	6 cut(s)	52, 53, 362, 609, 696, 921
BmrFI	CCNGG	2 cut(s)	366, 582
BmrI	ACTGGG	2 cut(s)	304, 366
BmuI	ACTGGG	2 cut(s)	304, 366
Bpu1102I	GCTNAGC	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	798
BpuMI	CCSGG	1 cut(s)	582
BsaBI	GATNNNNATC	2 cut(s)	720, 1114
BsaJI	CCNNGG	3 cut(s)	111, 364, 365
BsaWI	WCCGGW	2 cut(s)	627, 751
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 751
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	2 cut(s)	299, 361
Bse8I	GATNNNNATC	2 cut(s)	720, 1114
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	3 cut(s)	111, 364, 365
BseGI	GGATG	1 cut(s)	721
BseJI	GATNNNNATC	2 cut(s)	720, 1114
BseLI	CCNNNNNNNGG	2 cut(s)	347, 751
BseMII	CTCAG	3 cut(s)	255, 656, 750
BseNI	ACTGG	2 cut(s)	299, 361
BseRI	GAGGAG	1 cut(s)	449
BseSI	GKGCMC	2 cut(s)	55, 330
BseXI	GCAGC	4 cut(s)	49, 76, 79, 82
BseYI	CCCAGC	1 cut(s)	496
BshFI	GGCC	2 cut(s)	53, 340
BsiHKAI	GWGCWC	2 cut(s)	272, 330
BsiSI	CCGG	4 cut(s)	341, 581, 628, 752
BslFI	GGGAC	1 cut(s)	1170
BslI	CCNNNNNNNGG	2 cut(s)	347, 751
BsmAI	GTCTC	1 cut(s)	749
BsmFI	GGGAC	1 cut(s)	1170
BsmI	GAATGC	1 cut(s)	637
BsnI	GGCC	2 cut(s)	53, 340
Bsp119I	TTCGAA	1 cut(s)	798
Bsp120I	GGGCCC	1 cut(s)	51
Bsp1286I	GDGCHC	3 cut(s)	55, 272, 330
Bsp1407I	TGTACA	1 cut(s)	788
Bsp143I	GATC	1 cut(s)	721
Bsp1720I	GCTNAGC	1 cut(s)	144
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	1 cut(s)	444
BspANI	GGCC	2 cut(s)	53, 340
BspCNI	CTCAG	3 cut(s)	256, 657, 751
BspHI	TCATGA	1 cut(s)	735
BspLI	GGNNCC	6 cut(s)	52, 53, 362, 609, 696, 921
BspMAI	CTGCAG	1 cut(s)	131
BspPI	GGATC	1 cut(s)	729
BspT104I	TTCGAA	1 cut(s)	798
BsrFI	RCCGGY	1 cut(s)	340
BsrGI	TGTACA	1 cut(s)	788
BsrI	ACTGG	2 cut(s)	299, 361
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	3 cut(s)	111, 364, 365
BssMI	GATC	1 cut(s)	721
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	4 cut(s)	101, 290, 325, 911
Bst6I	CTCTTC	4 cut(s)	77, 651, 884, 1006
BstAPI	GCANNNNNTGC	2 cut(s)	769, 815
BstAUI	TGTACA	1 cut(s)	788
BstBI	TTCGAA	1 cut(s)	798
BstC8I	GCNNGC	1 cut(s)	807
BstDEI	CTNAG	6 cut(s)	144, 264, 621, 636, 665, 759
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	721
BstKTI	GATC	1 cut(s)	724
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	1 cut(s)	721
BstMWI	GCNNNNNNNGC	7 cut(s)	70, 140, 769, 815, 824, 959, 1004
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	364, 580
BstSFI	CTRYAG	1 cut(s)	127
BstSLI	GKGCMC	2 cut(s)	55, 330
BstV1I	GCAGC	4 cut(s)	49, 76, 79, 82
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
BsuRI	GGCC	2 cut(s)	53, 340
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	721
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	2 cut(s)	261, 948
Cac8I	GCNNGC	1 cut(s)	807
CciI	TCATGA	1 cut(s)	735
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	51, 52
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	3 cut(s)	789, 1035, 1066
CviAII	CATG	5 cut(s)	46, 112, 736, 959, 1028
CviQI	GTAC	3 cut(s)	789, 1035, 1066
DdeI	CTNAG	6 cut(s)	144, 264, 621, 636, 665, 759
DpnI	GATC	1 cut(s)	723
DpnII	GATC	1 cut(s)	721
DraI	TTTAAA	1 cut(s)	930
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	4 cut(s)	77, 651, 884, 1006
EarI	CTCTTC	4 cut(s)	77, 651, 884, 1006
Ecl136II	GAGCTC	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	2 cut(s)	55, 272
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	2 cut(s)	887, 987
EcoICRI	GAGCTC	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	2 cut(s)	55, 272
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	5 cut(s)	49, 115, 739, 962, 1031
FaqI	GGGAC	1 cut(s)	1170
FatI	CATG	5 cut(s)	45, 111, 735, 958, 1027
FauNDI	CATATG	1 cut(s)	768
Fnu4HI	GCNGC	4 cut(s)	38, 65, 68, 71
FokI	GGATG	1 cut(s)	728
FriOI	GRGCYC	2 cut(s)	55, 272
Fsp4HI	GCNGC	4 cut(s)	38, 65, 68, 71
FspBI	CTAG	1 cut(s)	963
GluI	GCNGC	4 cut(s)	38, 65, 68, 71
GsaI	CCCAGC	1 cut(s)	500
HaeIII	GGCC	2 cut(s)	53, 340
HapII	CCGG	4 cut(s)	341, 581, 628, 752
HgaI	GACGC	1 cut(s)	233
Hin1II	CATG	5 cut(s)	49, 115, 739, 962, 1031
HinfI	GANTC	6 cut(s)	137, 491, 667, 955, 1049, 1115
HpaII	CCGG	4 cut(s)	341, 581, 628, 752
HphI	GGTGA	2 cut(s)	467, 741
Hpy166II	GTNNAC	4 cut(s)	175, 328, 354, 644
Hpy188I	TCNGA	4 cut(s)	285, 520, 694, 1109
Hpy188III	TCNNGA	5 cut(s)	196, 557, 736, 905, 923
Hpy8I	GTNNAC	4 cut(s)	175, 328, 354, 644
Hpy99I	CGWCG	2 cut(s)	319, 325
HpyAV	CCTTC	5 cut(s)	409, 742, 911, 1032, 1117
HpyCH4III	ACNGT	4 cut(s)	101, 290, 325, 911
HpyCH4IV	ACGT	1 cut(s)	1159
HpyCH4V	TGCA	5 cut(s)	129, 328, 772, 809, 1166
HpyF10VI	GCNNNNNNNGC	7 cut(s)	70, 140, 769, 815, 824, 959, 1004
HpyF3I	CTNAG	6 cut(s)	144, 264, 621, 636, 665, 759
HpySE526I	ACGT	1 cut(s)	1159
Hsp92II	CATG	5 cut(s)	49, 115, 739, 962, 1031
Kzo9I	GATC	1 cut(s)	721
LmnI	GCTCC	1 cut(s)	263
Lsp1109I	GCAGC	4 cut(s)	49, 76, 79, 82
MaeI	CTAG	1 cut(s)	963
MaeII	ACGT	1 cut(s)	1159
MaeIII	GTNAC	4 cut(s)	161, 210, 221, 290
MalI	GATC	1 cut(s)	723
MboI	GATC	1 cut(s)	721
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	3 cut(s)	55, 272, 330
MluCI	AATT	5 cut(s)	403, 700, 727, 931, 1149
MlyI	GAGTC	5 cut(s)	131, 500, 676, 964, 1058
MmeI	TCCRAC	1 cut(s)	672
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	726, 929, 1152
MslI	CAYNNNNRTG	2 cut(s)	963, 1030
MspI	CCGG	4 cut(s)	341, 581, 628, 752
MspR9I	CCNGG	2 cut(s)	366, 582
Mva1269I	GAATGC	1 cut(s)	637
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	7 cut(s)	70, 140, 769, 815, 824, 959, 1004
NciI	CCSGG	1 cut(s)	582
NcoI	CCATGG	1 cut(s)	111
NdeI	CATATG	1 cut(s)	768
NdeII	GATC	1 cut(s)	721
NlaIII	CATG	5 cut(s)	49, 115, 739, 962, 1031
NlaIV	GGNNCC	6 cut(s)	52, 53, 362, 609, 696, 921
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	4 cut(s)	161, 210, 221, 290
NspV	TTCGAA	1 cut(s)	798
PagI	TCATGA	1 cut(s)	735
PasI	CCCWGGG	1 cut(s)	365
PctI	GAATGC	1 cut(s)	637
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	1115
PkrI	GCNGC	4 cut(s)	39, 66, 69, 72
PleI	GAGTC	5 cut(s)	131, 499, 675, 963, 1057
PpsI	GAGTC	5 cut(s)	131, 499, 675, 963, 1057
Psp124BI	GAGCTC	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	6 cut(s)	52, 53, 362, 609, 696, 921
PspOMI	GGGCCC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	51, 52
PstI	CTGCAG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	721
RsaI	GTAC	3 cut(s)	790, 1036, 1067
RsaNI	GTAC	3 cut(s)	789, 1035, 1066
RseI	CAYNNNNRTG	2 cut(s)	963, 1030
SacI	GAGCTC	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	726, 929, 1152
SatI	GCNGC	4 cut(s)	38, 65, 68, 71
Sau3AI	GATC	1 cut(s)	721
Sau96I	GGNCC	2 cut(s)	51, 52
SchI	GAGTC	5 cut(s)	131, 500, 676, 964, 1058
ScrFI	CCNGG	2 cut(s)	366, 582
SduI	GDGCHC	3 cut(s)	55, 272, 330
SfcI	CTRYAG	1 cut(s)	127
SfuI	TTCGAA	1 cut(s)	798
SmiI	ATTTAAAT	1 cut(s)	930
SmiMI	CAYNNNNRTG	2 cut(s)	963, 1030
Sse9I	AATT	5 cut(s)	403, 700, 727, 931, 1149
SsiI	CCGC	1 cut(s)	444
SspMI	CTAG	1 cut(s)	963
SstI	GAGCTC	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	364, 580
StyI	CCWWGG	1 cut(s)	111
SwaI	ATTTAAAT	1 cut(s)	930
TaaI	ACNGT	4 cut(s)	101, 290, 325, 911
TaiI	ACGT	1 cut(s)	1162
TaqI	TCGA	1 cut(s)	798
TasI	AATT	5 cut(s)	403, 700, 727, 931, 1149
TatI	WGTACW	2 cut(s)	788, 1034
TfiI	GAWTC	1 cut(s)	1115
Tru1I	TTAA	3 cut(s)	726, 929, 1152
Tru9I	TTAA	3 cut(s)	726, 929, 1152
TscAI	CASTG	2 cut(s)	268, 955
TseFI	GTSAC	4 cut(s)	161, 210, 221, 290
TseI	GCWGC	4 cut(s)	37, 64, 67, 70
Tsp45I	GTSAC	4 cut(s)	161, 210, 221, 290
TspDTI	ATGAA	6 cut(s)	17, 249, 722, 724, 1044, 1128
TspGWI	ACGGA	1 cut(s)	1135
TspRI	CASTG	2 cut(s)	268, 955
VneI	GTGCAC	1 cut(s)	326
XapI	RAATTY	2 cut(s)	403, 931
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.