Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010143

Physical Location & Seq

Genomic Coordinates Reverse (-)

58134733 .. 58136390

Gene Structure 1658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG350500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGGGCAGCAGAAGAAGAAGAAGAGGCTCTGTGATTACTGTGGAGTCTCCATGGCTCTGCTCTACTGCAGAGCCGACTCTGCTAAGCTCTGTTTCTCTTGTGACAAAGAAGTCCACTCGGCTAATCAGCTTTTCATCAAGCACACTCGGTCACAGCTCTGTGACGCCTGTGACGAAGCCCCTGCTTCTATTTTCTGCTCTACTGAGAGCTCTGTGCTGTGCCAGAACTGTGACTGGGAAAGGCATAATCTGTCGTCGGCGACGGTGCACGATAGGAGGCCGGTGGAGGGTTTTACTGGCAACCCTGGGTTGAATGAGCTGCTGGCGTTTGTGGGGTTTGAGAATCTGGATAAGAAAGGTTTGGTTGTTAGTGAGGAGAGTAGCGGTGGTGGTGGGTTTGATGGGTCTGGGCTTGATGGGTCGTTGGGTTTGTCCGAGGGGTTTTCGGATTTTCTGGTTTGGGAAACTCCCTCTGTTGTTAGTCTTGATGATTTGATTGTTTCGAGTCCGGCTCATAAGTTTCAGGCTATGGGGGTTCCTCCTCTGCCCAAGAACCGGAATGCTAAGTGTGGGCGACACAAGGAAGAGATACTGAGTCAGCTTCGGGTAGTAGCAAAGTCTGAACCCAATTTGATGAATGAGGATGTAGATCTTAATTCCTTCATGAGATTCCAATCACCGGAGACTGAGCATAATATGCAATCAGGGGGTTTCTGTACAAATTTTGAACAGGATGCGGAGCCGCTTGCGTTTCCTGCTTATGAGGCACAGGAGTTTGAGGCTAATCATTATGACAAGTCTTCAAGTCAAGATTTCTTCCCAAAAACATTACAGAGGAGCTACCTTCAGGACTGTTCTATGGTTCCTGATTTAAATTCGAATAATGATGGCACTGCAAGTCATGCTAGTGATGGTTTTGGAGGGCAAATGAATTCTGAAGCCTCTTCAGATTTCCCAAAAGTTCCTTCACATGAATGTACTCTAAATAGAGAGTCTGCACTCTCAAGGTACAAGGAGAAGAAGAAAACAAGGAGGTACGATAAGCACATCAGGTATGAATCAAGGAAGGTTCGAGCAGAAAGTAGGACAAGAATTAAGGGACGTTTTGCAAAGATAGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

374

Amino Acids

41.68

Weight (kDa)

5.92

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	7 - 52	1.2e-06	B-box zinc finger
zf-B_box	PF00643	51 - 94	6.2e-07	B-box zinc finger
CCT	PF06203	330 - 371	3.8e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47890 AT2G47890 AT2G47890
fragaria_vesca	FvH4_2g24910 FvH4_2g24910
malus_domestica	MD03G1277600.v1.1 MD11G1299600.v1.1
prunus_persica	Prupe.8G253900_v2.0.a1 Prupe.8G253900_v2.0.a1
pyrus_communis	pycom03g22100 pycom11g26320
rosa_chinensis	RchiOBHm_Chr6g0292831
rosa_laevigata	RLG00000011989
rosa_multiflora	Rmu_sc0000639.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174670
rosa_rugosa	Rorug06G0230000
rosa_samantha	Rh6AG343300 Rh6BG350500 Rh6CG357500 Rh6DG343400
rosa_wichuraiana	Rw6G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AciI	CCGC	3 cut(s)	384, 737, 743
AcsI	RAATTY	3 cut(s)	721, 874, 931
AcuI	CTGAAG	3 cut(s)	830, 930, 957
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	4 cut(s)	718, 979, 1010, 1037
AfiI	CCNNNNNNNGG	3 cut(s)	287, 555, 679
AgsI	TTSAA	3 cut(s)	313, 728, 804
AjnI	CCWGG	1 cut(s)	304
AjuI	GAANNNNNNNTTGG	2 cut(s)	949, 981
AluBI	AGCT	7 cut(s)	88, 130, 157, 210, 319, 601, 840
AluI	AGCT	7 cut(s)	88, 130, 157, 210, 319, 601, 840
Alw21I	GWGCWC	2 cut(s)	212, 270
Alw26I	GTCTC	2 cut(s)	52, 677
Alw44I	GTGCAC	1 cut(s)	266
AoxI	GGCC	1 cut(s)	278
ApaLI	GTGCAC	1 cut(s)	266
ApeKI	GCWGC	2 cut(s)	7, 319
ApoI	RAATTY	3 cut(s)	721, 874, 931
AsuHPI	GGTGA	1 cut(s)	669
AsuII	TTCGAA	1 cut(s)	878
BaeGI	GKGCMC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	792
Bbv12I	GWGCWC	2 cut(s)	212, 270
BbvI	GCAGC	2 cut(s)	19, 306
BccI	CCATC	4 cut(s)	395, 410, 881, 905
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	2 cut(s)	52, 677
BfaI	CTAG	1 cut(s)	906
BfmI	CTRYAG	1 cut(s)	67
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	3 cut(s)	8, 320, 743
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	3 cut(s)	9, 321, 744
Bme1390I	CCNGG	1 cut(s)	306
BmiI	GGNNCC	3 cut(s)	537, 741, 864
BmrFI	CCNGG	1 cut(s)	306
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	724
BmuI	ACTGGG	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	792
BplI	GAGNNNNNCTC	2 cut(s)	496, 528
Bpu1102I	GCTNAGC	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	878
BpuEI	CTTGAG	1 cut(s)	988
BsaBI	GATNNNNATC	2 cut(s)	648, 673
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	4 cut(s)	51, 304, 305, 435
BsaWI	WCCGGW	2 cut(s)	555, 679
Bsc4I	CCNNNNNNNGG	3 cut(s)	287, 555, 679
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	239, 301
Bse8I	GATNNNNATC	2 cut(s)	648, 673
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	4 cut(s)	51, 304, 305, 435
BseGI	GGATG	2 cut(s)	649, 739
BseJI	GATNNNNATC	2 cut(s)	648, 673
BseLI	CCNNNNNNNGG	3 cut(s)	287, 555, 679
BseMII	CTCAG	3 cut(s)	195, 584, 678
BseNI	ACTGG	2 cut(s)	239, 301
BseRI	GAGGAG	3 cut(s)	389, 531, 850
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	19, 306
BsgI	GTGCAG	1 cut(s)	981
BshFI	GGCC	1 cut(s)	280
BsiHKAI	GWGCWC	2 cut(s)	212, 270
BsiSI	CCGG	4 cut(s)	281, 509, 556, 680
BslFI	GGGAC	1 cut(s)	1113
BslI	CCNNNNNNNGG	3 cut(s)	287, 555, 679
BsmAI	GTCTC	2 cut(s)	52, 677
BsmFI	GGGAC	1 cut(s)	1113
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	280
Bsp119I	TTCGAA	1 cut(s)	878
Bsp1286I	GDGCHC	2 cut(s)	212, 270
Bsp1407I	TGTACA	1 cut(s)	716
Bsp143I	GATC	1 cut(s)	649
Bsp1720I	GCTNAGC	1 cut(s)	84
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	3 cut(s)	384, 737, 743
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	3 cut(s)	196, 585, 679
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	3 cut(s)	537, 741, 864
BspMAI	CTGCAG	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	878
BsrFI	RCCGGY	1 cut(s)	280
BsrGI	TGTACA	1 cut(s)	716
BsrI	ACTGG	2 cut(s)	239, 301
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	4 cut(s)	51, 304, 305, 435
BssMI	GATC	1 cut(s)	649
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	4 cut(s)	41, 230, 265, 854
Bst6I	CTCTTC	3 cut(s)	17, 579, 949
BstACI	GRCGYC	1 cut(s)	165
BstAPI	GCANNNNNTGC	2 cut(s)	697, 902
BstAUI	TGTACA	1 cut(s)	716
BstBI	TTCGAA	1 cut(s)	878
BstC8I	GCNNGC	2 cut(s)	324, 747
BstDEI	CTNAG	5 cut(s)	84, 204, 564, 593, 687
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	649, 739
BstKTI	GATC	1 cut(s)	652
BstMAI	GTCTC	2 cut(s)	52, 677
BstMBI	GATC	1 cut(s)	649
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 697, 755, 764, 902
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	19, 306
BstV2I	GAAGAC	1 cut(s)	792
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuRI	GGCC	1 cut(s)	280
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	649, 739
BtsI	GCAGTG	1 cut(s)	891
BtsIMutI	CAGTG	1 cut(s)	891
Cac8I	GCNNGC	2 cut(s)	324, 747
CciI	TCATGA	1 cut(s)	663
Cfr10I	RCCGGY	1 cut(s)	280
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	4 cut(s)	717, 978, 1009, 1036
CviAII	CATG	4 cut(s)	52, 664, 902, 971
CviQI	GTAC	4 cut(s)	717, 978, 1009, 1036
DdeI	CTNAG	5 cut(s)	84, 204, 564, 593, 687
DpnI	GATC	1 cut(s)	651
DpnII	GATC	1 cut(s)	649
DraI	TTTAAA	1 cut(s)	873
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Eam1104I	CTCTTC	3 cut(s)	17, 579, 949
EarI	CTCTTC	3 cut(s)	17, 579, 949
Ecl136II	GAGCTC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	210
Eco57I	CTGAAG	3 cut(s)	830, 930, 957
EcoICRI	GAGCTC	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	931
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	4 cut(s)	55, 667, 905, 974
FaqI	GGGAC	1 cut(s)	1113
FatI	CATG	4 cut(s)	51, 663, 901, 970
Fnu4HI	GCNGC	3 cut(s)	8, 320, 743
FokI	GGATG	2 cut(s)	656, 746
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	3 cut(s)	8, 320, 743
FspBI	CTAG	1 cut(s)	906
GluI	GCNGC	3 cut(s)	8, 320, 743
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	4 cut(s)	281, 509, 556, 680
HgaI	GACGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	4 cut(s)	55, 667, 905, 974
HinfI	GANTC	8 cut(s)	45, 77, 343, 505, 595, 669, 992, 1058
HpaII	CCGG	4 cut(s)	281, 509, 556, 680
HphI	GGTGA	1 cut(s)	669
Hpy166II	GTNNAC	2 cut(s)	115, 268
Hpy188I	TCNGA	5 cut(s)	436, 448, 622, 937, 949
Hpy188III	TCNNGA	6 cut(s)	347, 485, 664, 809, 848, 866
Hpy8I	GTNNAC	2 cut(s)	115, 268
Hpy99I	CGWCG	2 cut(s)	259, 265
HpyAV	CCTTC	4 cut(s)	670, 854, 975, 1060
HpyCH4III	ACNGT	4 cut(s)	41, 230, 265, 854
HpyCH4IV	ACGT	1 cut(s)	1102
HpyCH4V	TGCA	6 cut(s)	69, 268, 700, 896, 998, 1109
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 697, 755, 764, 902
HpyF3I	CTNAG	5 cut(s)	84, 204, 564, 593, 687
HpySE526I	ACGT	1 cut(s)	1102
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	4 cut(s)	55, 667, 905, 974
Kzo9I	GATC	1 cut(s)	649
LmnI	GCTCC	2 cut(s)	739, 837
Lsp1109I	GCAGC	2 cut(s)	19, 306
LweI	GCATC	1 cut(s)	724
MaeI	CTAG	1 cut(s)	906
MaeII	ACGT	1 cut(s)	1102
MaeIII	GTNAC	5 cut(s)	101, 150, 161, 170, 230
MalI	GATC	1 cut(s)	651
MboI	GATC	1 cut(s)	649
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	2 cut(s)	212, 270
MluCI	AATT	6 cut(s)	628, 655, 721, 874, 931, 1092
MlyI	GAGTC	5 cut(s)	54, 71, 514, 604, 1001
MseI	TTAA	3 cut(s)	654, 872, 1095
MslI	CAYNNNNRTG	2 cut(s)	906, 973
MspI	CCGG	4 cut(s)	281, 509, 556, 680
MspR9I	CCNGG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	5 cut(s)	80, 697, 755, 764, 902
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	649
NlaIII	CATG	4 cut(s)	55, 667, 905, 974
NlaIV	GGNNCC	3 cut(s)	537, 741, 864
NmeAIII	GCCGAG	1 cut(s)	98
NmuCI	GTSAC	5 cut(s)	101, 150, 161, 170, 230
NspV	TTCGAA	1 cut(s)	878
PagI	TCATGA	1 cut(s)	663
PasI	CCCWGGG	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	343, 669, 1058
PkrI	GCNGC	3 cut(s)	9, 321, 744
PleI	GAGTC	5 cut(s)	53, 71, 513, 603, 1000
PpsI	GAGTC	5 cut(s)	53, 71, 513, 603, 1000
Psp124BI	GAGCTC	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	3 cut(s)	537, 741, 864
PstI	CTGCAG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	649
RsaI	GTAC	4 cut(s)	718, 979, 1010, 1037
RsaNI	GTAC	4 cut(s)	717, 978, 1009, 1036
RseI	CAYNNNNRTG	2 cut(s)	906, 973
SacI	GAGCTC	1 cut(s)	212
SaqAI	TTAA	3 cut(s)	654, 872, 1095
SatI	GCNGC	3 cut(s)	8, 320, 743
Sau3AI	GATC	1 cut(s)	649
SchI	GAGTC	5 cut(s)	54, 71, 514, 604, 1001
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	2 cut(s)	212, 270
SfaNI	GCATC	1 cut(s)	724
SfcI	CTRYAG	1 cut(s)	67
SfuI	TTCGAA	1 cut(s)	878
SmiI	ATTTAAAT	1 cut(s)	873
SmiMI	CAYNNNNRTG	2 cut(s)	906, 973
SmlI	CTYRAG	1 cut(s)	1003
SmoI	CTYRAG	1 cut(s)	1003
Sse9I	AATT	6 cut(s)	628, 655, 721, 874, 931, 1092
SsiI	CCGC	3 cut(s)	384, 737, 743
SspMI	CTAG	1 cut(s)	906
SstI	GAGCTC	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	51
SwaI	ATTTAAAT	1 cut(s)	873
TaaI	ACNGT	4 cut(s)	41, 230, 265, 854
TaiI	ACGT	1 cut(s)	1105
TaqI	TCGA	3 cut(s)	503, 878, 1072
TaqII	GACCGA	1 cut(s)	138
TasI	AATT	6 cut(s)	628, 655, 721, 874, 931, 1092
TatI	WGTACW	2 cut(s)	716, 977
TauI	GCSGC	1 cut(s)	745
TfiI	GAWTC	3 cut(s)	343, 669, 1058
Tru1I	TTAA	3 cut(s)	654, 872, 1095
Tru9I	TTAA	3 cut(s)	654, 872, 1095
TscAI	CASTG	1 cut(s)	898
TseFI	GTSAC	5 cut(s)	101, 150, 161, 170, 230
TseI	GCWGC	2 cut(s)	7, 319
Tsp45I	GTSAC	5 cut(s)	101, 150, 161, 170, 230
TspDTI	ATGAA	6 cut(s)	124, 650, 652, 944, 987, 1071
TspRI	CASTG	1 cut(s)	898
VneI	GTGCAC	1 cut(s)	266
XapI	RAATTY	3 cut(s)	721, 874, 931
XspI	CTAG	1 cut(s)	906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.