Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010143

Physical Location & Seq

Genomic Coordinates Forward (+)

14317399 .. 14319972

Gene Structure 2574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAATGGTTTCAAGGAAGAAGTCGAACCAGGGCACCAGAACATGGGGCAGCAGAAGCAGCAGAAGAAGAAGAAGAGGCTCTGTGATTACTGTGGAGTCTCCATGGCTCTGCTCTACTGCAGAGCCGACTCTGCTAAGCTCTGTTTCTCTTGTGACAAAGAAGTCCACTCGGCTAATCAGCTTTTCATCAAGCACACTCGGTCACAGCTCTGTGACGCCTGTGACGAAGCCCCTGCTTCTATTTTCTGCTCTACTGAGAGCTCTGTGCTGTGCCAGAACTGTGACTGGGAAAGGCATAATCTGTCGTCGGCGACGGTGCACGATAGGAGGCCAGTGGAGGGTTTTACTGAGAACCCTGGGTTGAATGAGCTGCTGGCGTTTGTGGGGTTTGAGAATCTGGATAAGAAATGTTTGGTTGTTAGTGAGGAGAGTAGCGGTGGTGGTGGTGGGTTTGATGGGTCTGGGCTTGATGGGTCGTTGGGTTTGTCCGAGGGGTTTTCGGATTTTCTGGTTTGGGAAACTCCCTCTGTTGTTAGTCTTGATGATTTGATTGTTTCGAGTCCGGCTCATAAGTTTCAGGCTATGGGGGTTCCTCCTCTGCCCAAGAACCGGAATGCTAAGTGTGGGCGACACAAGGAAGAGATACTGAGTCAGCTTCGGGTAGTAGCAAAGTCCGAACCCAATTTGATGAATGAGGATGTAGATCTAAATTCCTTCATGAGATTCCAATCACCGGAGACTGAGCATGATATGCAATCAGGGGATTTCTGTACAAATTTTGAACAGGATGCGGAGCCGCTTGCGTTTCCTGCCTATGAGGCACAGGAGTTTGAGGCTAATCATTATGGCAAGTCTTCAAGTCAAGATTTCTTCCCAAAAACATTACAGAGGAGCTACCTTCAGGACTGTTCTATGGTTCCTGATTTAAATTCGAATAATGATGGCACTGCAAGTCATGCTAGTGATGGTTTTGGAGAGAAAATGAATTCTGAAGCCTCTTCAGCTTTCCCTAAAGTTCCTTCACATGAATGTACTCTAAATAGAGAGTCTGCACTCTCAAGGTACAAGGAGAAGAAGAAAACAAGGAGGTACGATAAGCACATCAGGTATGAATCAAGGAAGGTTCGAGCAGAAAGTAGGACAAGAATTAAGGGACGTTTTGCAAAGATAGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

392

Amino Acids

43.87

Weight (kDa)

5.8

Isoelectric Point (pI)

60.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	24 - 69	1.3e-06	B-box zinc finger
zf-B_box	PF00643	68 - 111	6.6e-07	B-box zinc finger
CCT	PF06203	348 - 389	4e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47890 AT2G47890 AT2G47890
fragaria_vesca	FvH4_2g24910 FvH4_2g24910
malus_domestica	MD03G1277600.v1.1 MD11G1299600.v1.1
prunus_persica	Prupe.8G253900_v2.0.a1 Prupe.8G253900_v2.0.a1
pyrus_communis	pycom03g22100 pycom11g26320
rosa_chinensis	RchiOBHm_Chr6g0292831
rosa_laevigata	RLG00000011989
rosa_multiflora	Rmu_sc0000639.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174670
rosa_rugosa	Rorug06G0230000
rosa_samantha	Rh6AG343300 Rh6BG350500 Rh6CG357500 Rh6DG343400
rosa_wichuraiana	Rw6G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	33
AccB7I	CCANNNNNTGG	1 cut(s)	43
AciI	CCGC	3 cut(s)	435, 791, 797
AcsI	RAATTY	4 cut(s)	709, 775, 928, 985
AcuI	CTGAAG	3 cut(s)	884, 984, 1011
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	4 cut(s)	772, 1033, 1064, 1091
AfiI	CCNNNNNNNGG	4 cut(s)	43, 338, 609, 733
AgsI	TTSAA	4 cut(s)	13, 364, 782, 858
AjnI	CCWGG	2 cut(s)	28, 355
AluBI	AGCT	8 cut(s)	139, 181, 208, 261, 370, 655, 894, 1004
AluI	AGCT	8 cut(s)	139, 181, 208, 261, 370, 655, 894, 1004
Alw21I	GWGCWC	2 cut(s)	263, 321
Alw26I	GTCTC	2 cut(s)	103, 731
Alw44I	GTGCAC	1 cut(s)	317
AoxI	GGCC	1 cut(s)	329
ApaLI	GTGCAC	1 cut(s)	317
ApeKI	GCWGC	3 cut(s)	49, 58, 370
ApoI	RAATTY	4 cut(s)	709, 775, 928, 985
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	723
AsuII	TTCGAA	1 cut(s)	932
BaeGI	GKGCMC	2 cut(s)	36, 321
BanI	GGYRCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	2 cut(s)	263, 321
BbvI	GCAGC	3 cut(s)	61, 70, 357
BccI	CCATC	4 cut(s)	449, 464, 935, 959
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	2 cut(s)	30, 357
BcoDI	GTCTC	2 cut(s)	103, 731
BfaI	CTAG	1 cut(s)	960
BfmI	CTRYAG	1 cut(s)	118
BglI	GCCNNNNNGGC	1 cut(s)	818
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	4 cut(s)	50, 59, 371, 797
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	4 cut(s)	51, 60, 372, 798
Bme1390I	CCNGG	2 cut(s)	30, 357
BmiI	GGNNCC	4 cut(s)	35, 591, 795, 918
BmrFI	CCNGG	2 cut(s)	30, 357
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	1 cut(s)	778
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	846
BplI	GAGNNNNNCTC	2 cut(s)	550, 582
Bpu1102I	GCTNAGC	1 cut(s)	135
Bpu14I	TTCGAA	1 cut(s)	932
BpuEI	CTTGAG	1 cut(s)	1042
BsaBI	GATNNNNATC	2 cut(s)	702, 727
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	5 cut(s)	29, 102, 355, 356, 489
BsaWI	WCCGGW	2 cut(s)	609, 733
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 338, 609, 733
Bse1I	ACTGG	2 cut(s)	290, 332
Bse8I	GATNNNNATC	2 cut(s)	702, 727
BseBI	CCWGG	2 cut(s)	30, 357
BseDI	CCNNGG	5 cut(s)	29, 102, 355, 356, 489
BseGI	GGATG	2 cut(s)	703, 793
BseJI	GATNNNNATC	2 cut(s)	702, 727
BseLI	CCNNNNNNNGG	4 cut(s)	43, 338, 609, 733
BseMII	CTCAG	4 cut(s)	246, 339, 638, 732
BseNI	ACTGG	2 cut(s)	290, 332
BseRI	GAGGAG	3 cut(s)	440, 585, 904
BseSI	GKGCMC	2 cut(s)	36, 321
BseXI	GCAGC	3 cut(s)	61, 70, 357
BsgI	GTGCAG	1 cut(s)	1035
BshFI	GGCC	1 cut(s)	331
BshNI	GGYRCC	1 cut(s)	33
BsiHKAI	GWGCWC	2 cut(s)	263, 321
BsiSI	CCGG	3 cut(s)	563, 610, 734
BslFI	GGGAC	1 cut(s)	1167
BslI	CCNNNNNNNGG	4 cut(s)	43, 338, 609, 733
BsmAI	GTCTC	2 cut(s)	103, 731
BsmFI	GGGAC	1 cut(s)	1167
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	1 cut(s)	331
Bsp119I	TTCGAA	1 cut(s)	932
Bsp1286I	GDGCHC	3 cut(s)	36, 263, 321
Bsp1407I	TGTACA	1 cut(s)	770
Bsp143I	GATC	1 cut(s)	703
Bsp1720I	GCTNAGC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	3 cut(s)	435, 791, 797
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	4 cut(s)	247, 340, 639, 733
BspHI	TCATGA	1 cut(s)	717
BspLI	GGNNCC	4 cut(s)	35, 591, 795, 918
BspMAI	CTGCAG	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	932
BspT107I	GGYRCC	1 cut(s)	33
BsrGI	TGTACA	1 cut(s)	770
BsrI	ACTGG	2 cut(s)	290, 332
BssECI	CCNNGG	5 cut(s)	29, 102, 355, 356, 489
BssMI	GATC	1 cut(s)	703
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	102
Bst2UI	CCWGG	2 cut(s)	30, 357
Bst4CI	ACNGT	4 cut(s)	92, 281, 316, 908
Bst6I	CTCTTC	3 cut(s)	68, 633, 1003
BstACI	GRCGYC	1 cut(s)	216
BstAPI	GCANNNNNTGC	2 cut(s)	751, 956
BstAUI	TGTACA	1 cut(s)	770
BstBI	TTCGAA	1 cut(s)	932
BstC8I	GCNNGC	2 cut(s)	375, 801
BstDEI	CTNAG	6 cut(s)	135, 255, 348, 618, 647, 741
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	703, 793
BstKTI	GATC	1 cut(s)	706
BstMAI	GTCTC	2 cut(s)	103, 731
BstMBI	GATC	1 cut(s)	703
BstMWI	GCNNNNNNNGC	8 cut(s)	55, 58, 131, 751, 809, 818, 956, 1001
BstNI	CCWGG	2 cut(s)	30, 357
BstSCI	CCNGG	2 cut(s)	28, 355
BstSFI	CTRYAG	1 cut(s)	118
BstSLI	GKGCMC	2 cut(s)	36, 321
BstV1I	GCAGC	3 cut(s)	61, 70, 357
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BsuRI	GGCC	1 cut(s)	331
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	703, 793
BtsI	GCAGTG	1 cut(s)	945
BtsIMutI	CAGTG	2 cut(s)	339, 945
Cac8I	GCNNGC	2 cut(s)	375, 801
CciI	TCATGA	1 cut(s)	717
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	4 cut(s)	771, 1032, 1063, 1090
CviAII	CATG	6 cut(s)	43, 103, 718, 746, 956, 1025
CviQI	GTAC	4 cut(s)	771, 1032, 1063, 1090
DdeI	CTNAG	6 cut(s)	135, 255, 348, 618, 647, 741
DpnI	GATC	1 cut(s)	705
DpnII	GATC	1 cut(s)	703
DraI	TTTAAA	1 cut(s)	927
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	3 cut(s)	68, 633, 1003
EarI	CTCTTC	3 cut(s)	68, 633, 1003
Ecl136II	GAGCTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	261
Eco57I	CTGAAG	3 cut(s)	884, 984, 1011
EcoICRI	GAGCTC	1 cut(s)	261
EcoRI	GAATTC	1 cut(s)	985
EcoRII	CCWGG	2 cut(s)	28, 355
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	6 cut(s)	46, 106, 721, 749, 959, 1028
FaqI	GGGAC	1 cut(s)	1167
FatI	CATG	6 cut(s)	42, 102, 717, 745, 955, 1024
Fnu4HI	GCNGC	4 cut(s)	50, 59, 371, 797
FokI	GGATG	2 cut(s)	710, 800
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	4 cut(s)	50, 59, 371, 797
FspBI	CTAG	1 cut(s)	960
GluI	GCNGC	4 cut(s)	50, 59, 371, 797
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	3 cut(s)	563, 610, 734
HgaI	GACGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	6 cut(s)	46, 106, 721, 749, 959, 1028
HinfI	GANTC	8 cut(s)	96, 128, 394, 559, 649, 723, 1046, 1112
HpaII	CCGG	3 cut(s)	563, 610, 734
HphI	GGTGA	1 cut(s)	723
Hpy166II	GTNNAC	2 cut(s)	166, 319
Hpy188I	TCNGA	4 cut(s)	490, 502, 676, 991
Hpy188III	TCNNGA	6 cut(s)	398, 539, 718, 863, 902, 920
Hpy8I	GTNNAC	2 cut(s)	166, 319
Hpy99I	CGWCG	2 cut(s)	310, 316
HpyAV	CCTTC	4 cut(s)	724, 908, 1029, 1114
HpyCH4III	ACNGT	4 cut(s)	92, 281, 316, 908
HpyCH4IV	ACGT	1 cut(s)	1156
HpyCH4V	TGCA	6 cut(s)	120, 319, 754, 950, 1052, 1163
HpyF10VI	GCNNNNNNNGC	8 cut(s)	55, 58, 131, 751, 809, 818, 956, 1001
HpyF3I	CTNAG	6 cut(s)	135, 255, 348, 618, 647, 741
HpySE526I	ACGT	1 cut(s)	1156
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	6 cut(s)	46, 106, 721, 749, 959, 1028
Kzo9I	GATC	1 cut(s)	703
LmnI	GCTCC	2 cut(s)	793, 891
Lsp1109I	GCAGC	3 cut(s)	61, 70, 357
LweI	GCATC	1 cut(s)	778
MaeI	CTAG	1 cut(s)	960
MaeII	ACGT	1 cut(s)	1156
MaeIII	GTNAC	5 cut(s)	152, 201, 212, 221, 281
MalI	GATC	1 cut(s)	705
MboI	GATC	1 cut(s)	703
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	3 cut(s)	36, 263, 321
MluCI	AATT	6 cut(s)	682, 709, 775, 928, 985, 1146
MlyI	GAGTC	5 cut(s)	105, 122, 568, 658, 1055
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	926, 1149
MslI	CAYNNNNRTG	2 cut(s)	960, 1027
MspI	CCGG	3 cut(s)	563, 610, 734
MspR9I	CCNGG	2 cut(s)	30, 357
Mva1269I	GAATGC	1 cut(s)	619
MvaI	CCWGG	2 cut(s)	30, 357
MwoI	GCNNNNNNNGC	8 cut(s)	55, 58, 131, 751, 809, 818, 956, 1001
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	703
NlaIII	CATG	6 cut(s)	46, 106, 721, 749, 959, 1028
NlaIV	GGNNCC	4 cut(s)	35, 591, 795, 918
NmeAIII	GCCGAG	1 cut(s)	149
NmuCI	GTSAC	5 cut(s)	152, 201, 212, 221, 281
NspV	TTCGAA	1 cut(s)	932
PagI	TCATGA	1 cut(s)	717
PasI	CCCWGGG	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	394, 723, 1112
PflMI	CCANNNNNTGG	1 cut(s)	43
PkrI	GCNGC	4 cut(s)	51, 60, 372, 798
PleI	GAGTC	5 cut(s)	104, 122, 567, 657, 1054
PpsI	GAGTC	5 cut(s)	104, 122, 567, 657, 1054
Psp124BI	GAGCTC	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	28, 355
PspGI	CCWGG	2 cut(s)	28, 355
PspN4I	GGNNCC	4 cut(s)	35, 591, 795, 918
PstI	CTGCAG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	703
RsaI	GTAC	4 cut(s)	772, 1033, 1064, 1091
RsaNI	GTAC	4 cut(s)	771, 1032, 1063, 1090
RseI	CAYNNNNRTG	2 cut(s)	960, 1027
SacI	GAGCTC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	926, 1149
SatI	GCNGC	4 cut(s)	50, 59, 371, 797
Sau3AI	GATC	1 cut(s)	703
SchI	GAGTC	5 cut(s)	105, 122, 568, 658, 1055
ScrFI	CCNGG	2 cut(s)	30, 357
SduI	GDGCHC	3 cut(s)	36, 263, 321
SfaNI	GCATC	1 cut(s)	778
SfcI	CTRYAG	1 cut(s)	118
SfuI	TTCGAA	1 cut(s)	932
SmiI	ATTTAAAT	1 cut(s)	927
SmiMI	CAYNNNNRTG	2 cut(s)	960, 1027
SmlI	CTYRAG	1 cut(s)	1057
SmoI	CTYRAG	1 cut(s)	1057
Sse9I	AATT	6 cut(s)	682, 709, 775, 928, 985, 1146
SsiI	CCGC	3 cut(s)	435, 791, 797
SspMI	CTAG	1 cut(s)	960
SstI	GAGCTC	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	28, 355
StyI	CCWWGG	1 cut(s)	102
SwaI	ATTTAAAT	1 cut(s)	927
TaaI	ACNGT	4 cut(s)	92, 281, 316, 908
TaiI	ACGT	1 cut(s)	1159
TaqI	TCGA	4 cut(s)	24, 557, 932, 1126
TaqII	GACCGA	1 cut(s)	189
TasI	AATT	6 cut(s)	682, 709, 775, 928, 985, 1146
TatI	WGTACW	2 cut(s)	770, 1031
TauI	GCSGC	1 cut(s)	799
TfiI	GAWTC	3 cut(s)	394, 723, 1112
Tru1I	TTAA	2 cut(s)	926, 1149
Tru9I	TTAA	2 cut(s)	926, 1149
TscAI	CASTG	2 cut(s)	339, 952
TseFI	GTSAC	5 cut(s)	152, 201, 212, 221, 281
TseI	GCWGC	3 cut(s)	49, 58, 370
Tsp45I	GTSAC	5 cut(s)	152, 201, 212, 221, 281
TspDTI	ATGAA	7 cut(s)	17, 175, 704, 706, 998, 1041, 1125
TspRI	CASTG	2 cut(s)	339, 952
Van91I	CCANNNNNTGG	1 cut(s)	43
VneI	GTGCAC	1 cut(s)	317
XapI	RAATTY	4 cut(s)	709, 775, 928, 985
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.