Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010143

Physical Location & Seq

Genomic Coordinates Reverse (-)

55672819 .. 55676249

Gene Structure 3431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26276

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAATGGTTTCAAGGAAGAAGACGAACCAGGGCACCAGAACATGGGGCCGAAGATGAATAAGAAGAGGCTCTGTGATTACTGCGGAGTCTCCATGGCTCTGCTCTACTGCAGAGCCGACTCTGCTAAGCTCTGTTTCTCTTGTGACAAAGAGGTCCACTCGGCTAATCAGCTTTTCATCAAGCACACTCGGTCACAGCTCTGTGACGCCTGTGACGAAGCCCCTGCTTCTATTTTCTGCTCTACTGAGAGCTCTGTGCTGTGCCAGAACTGTGACTGGGAAAGGCATAATCTGTCGTCGGCGACGGTGCACGTTAGGAGGCCGGTGGAGGGTTTTACCGGGAACCCTGGGTTGAATGAGCTGCTGGCGTTTGTGGGGTTTGAGAATCTGGATAAGAAAGGTTTGGTTGTTAGTGAGGAGAGTAGCGGTGGTGGTGGTGGGTTTGATGGGTCTGGGCTTGACGGGTCGTTGGGTTTGTCCGAGGGGTTTTCGGATTTTCTGGTTTGGGAAACTCCCTCTGTTGTTAGTCTTGATGATTTGATTGTTTCGAGTCCGGCTCATAAGTTTCAGGCTATGGGGGTTCCTCCTCTGCCCAAGAACCGGAATGCTAAGTGTGGGCGACACAAGGAAGAGATACTGAGTCAGCTTCGGGTAGTAGCAAAGTCTGAACCCAATTTGATGAATGAGGATGTAGATCTTAATTCCTTCATGAGATTCCAATCACCGGAGACTGAGCATAATATGCAATCAGGGGGTTTCTGTACAAATTTTGAACAGGATGCGGAGCCGCTTGCGTTTCCTGCTTATGAGGCACAGGAGTCTGAGGCTAATCATTATGACAAGTCTTCAAGTCAAGATTTCTTCCCAAAAACATTACAGAGGAGCTACCTTCAGGACTGTTCTATGGTTCCTGATTTAAATTCGAATAATGATGGCACTGCAAGTCATGCTAGTGATGGTTTTGGAGGGCAAATGAATTCTGAAGCCTCTTCAGCTTTCCCAAAAGTTCCTTCACATGAATGTACTCTAAATAGAGAGTCTGCACTCTCAAGGTACAAGGAGAAGAAGAAAACAAGGAGGTACGATAAGCACATCAGGTATGAATCAAGGAAGGTTCGAGCAGAAAGTAGGACAAGAATTAAGGGACGTTTTGCAAAGATAGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

389

Amino Acids

43.19

Weight (kDa)

5.79

Isoelectric Point (pI)

62.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	20 - 66	1e-06	B-box zinc finger
zf-B_box	PF00643	65 - 108	1.5e-06	B-box zinc finger
CCT	PF06203	345 - 386	4e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47890 AT2G47890 AT2G47890
fragaria_vesca	FvH4_2g24910 FvH4_2g24910
malus_domestica	MD03G1277600.v1.1 MD11G1299600.v1.1
prunus_persica	Prupe.8G253900_v2.0.a1 Prupe.8G253900_v2.0.a1
pyrus_communis	pycom03g22100 pycom11g26320
rosa_chinensis	RchiOBHm_Chr6g0292831
rosa_laevigata	RLG00000011989
rosa_multiflora	Rmu_sc0000639.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174670
rosa_rugosa	Rorug06G0230000
rosa_samantha	Rh6AG343300 Rh6BG350500 Rh6CG357500 Rh6DG343400
rosa_wichuraiana	Rw6G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	33
AccB7I	CCANNNNNTGG	1 cut(s)	43
AciI	CCGC	4 cut(s)	84, 426, 782, 788
AcsI	RAATTY	3 cut(s)	766, 919, 976
AcuI	CTGAAG	3 cut(s)	875, 975, 1002
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	4 cut(s)	763, 1024, 1055, 1082
AfiI	CCNNNNNNNGG	4 cut(s)	43, 329, 600, 724
AgsI	TTSAA	4 cut(s)	13, 355, 773, 849
AjnI	CCWGG	2 cut(s)	28, 346
AjuI	GAANNNNNNNTTGG	2 cut(s)	994, 1026
AluBI	AGCT	8 cut(s)	130, 172, 199, 252, 361, 646, 885, 995
AluI	AGCT	8 cut(s)	130, 172, 199, 252, 361, 646, 885, 995
Alw21I	GWGCWC	2 cut(s)	254, 312
Alw26I	GTCTC	2 cut(s)	94, 722
Alw44I	GTGCAC	1 cut(s)	308
AoxI	GGCC	2 cut(s)	47, 320
ApaLI	GTGCAC	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	3 cut(s)	766, 919, 976
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	47, 154
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	714
AsuII	TTCGAA	1 cut(s)	923
AvaII	GGWCC	1 cut(s)	154
BaeGI	GKGCMC	2 cut(s)	36, 312
BanI	GGYRCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	254
BbsI	GAAGAC	2 cut(s)	27, 837
Bbv12I	GWGCWC	2 cut(s)	254, 312
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	3 cut(s)	440, 926, 950
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	2 cut(s)	30, 348
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	94, 722
BfaI	CTAG	1 cut(s)	951
BfmI	CTRYAG	1 cut(s)	109
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	2 cut(s)	362, 788
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	2 cut(s)	363, 789
Bme1390I	CCNGG	3 cut(s)	30, 340, 348
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	2 cut(s)	47, 154
BmiI	GGNNCC	6 cut(s)	35, 48, 344, 582, 786, 909
BmrFI	CCNGG	3 cut(s)	30, 340, 348
BmrI	ACTGGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	769
BmuI	ACTGGG	1 cut(s)	286
BpiI	GAAGAC	2 cut(s)	27, 837
BplI	GAGNNNNNCTC	4 cut(s)	143, 175, 541, 573
Bpu1102I	GCTNAGC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	923
BpuEI	CTTGAG	1 cut(s)	1033
BpuMI	CCSGG	1 cut(s)	340
BsaBI	GATNNNNATC	2 cut(s)	693, 718
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	5 cut(s)	29, 93, 346, 347, 480
BsaWI	WCCGGW	2 cut(s)	600, 724
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 329, 600, 724
Bse118I	RCCGGY	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	281
Bse8I	GATNNNNATC	2 cut(s)	693, 718
BseBI	CCWGG	2 cut(s)	30, 348
BseDI	CCNNGG	5 cut(s)	29, 93, 346, 347, 480
BseGI	GGATG	2 cut(s)	694, 784
BseJI	GATNNNNATC	2 cut(s)	693, 718
BseLI	CCNNNNNNNGG	4 cut(s)	43, 329, 600, 724
BseMII	CTCAG	4 cut(s)	237, 629, 723, 813
BseNI	ACTGG	1 cut(s)	281
BseRI	GAGGAG	3 cut(s)	431, 576, 895
BseSI	GKGCMC	2 cut(s)	36, 312
BseXI	GCAGC	1 cut(s)	348
BsgI	GTGCAG	1 cut(s)	1026
BshFI	GGCC	2 cut(s)	49, 322
BshNI	GGYRCC	1 cut(s)	33
BsiHKAI	GWGCWC	2 cut(s)	254, 312
BsiSI	CCGG	5 cut(s)	323, 339, 554, 601, 725
BslFI	GGGAC	1 cut(s)	1158
BslI	CCNNNNNNNGG	4 cut(s)	43, 329, 600, 724
BsmAI	GTCTC	2 cut(s)	94, 722
BsmFI	GGGAC	1 cut(s)	1158
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	2 cut(s)	49, 322
Bsp119I	TTCGAA	1 cut(s)	923
Bsp1286I	GDGCHC	3 cut(s)	36, 254, 312
Bsp1407I	TGTACA	1 cut(s)	761
Bsp143I	GATC	1 cut(s)	694
Bsp1720I	GCTNAGC	1 cut(s)	126
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	4 cut(s)	84, 426, 782, 788
BspANI	GGCC	2 cut(s)	49, 322
BspCNI	CTCAG	4 cut(s)	238, 630, 724, 814
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	6 cut(s)	35, 48, 344, 582, 786, 909
BspMAI	CTGCAG	1 cut(s)	113
BspT104I	TTCGAA	1 cut(s)	923
BspT107I	GGYRCC	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	322
BsrGI	TGTACA	1 cut(s)	761
BsrI	ACTGG	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	5 cut(s)	29, 93, 346, 347, 480
BssMI	GATC	1 cut(s)	694
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	2 cut(s)	30, 348
Bst4CI	ACNGT	3 cut(s)	272, 307, 899
Bst6I	CTCTTC	3 cut(s)	59, 624, 994
BstACI	GRCGYC	1 cut(s)	207
BstAPI	GCANNNNNTGC	2 cut(s)	742, 947
BstAUI	TGTACA	1 cut(s)	761
BstBI	TTCGAA	1 cut(s)	923
BstC8I	GCNNGC	2 cut(s)	366, 792
BstDEI	CTNAG	6 cut(s)	126, 246, 609, 638, 732, 822
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	694, 784
BstKTI	GATC	1 cut(s)	697
BstMAI	GTCTC	2 cut(s)	94, 722
BstMBI	GATC	1 cut(s)	694
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 742, 800, 809, 947, 992
BstNI	CCWGG	2 cut(s)	30, 348
BstSCI	CCNGG	3 cut(s)	28, 338, 346
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	2 cut(s)	36, 312
BstV1I	GCAGC	1 cut(s)	348
BstV2I	GAAGAC	2 cut(s)	27, 837
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BsuRI	GGCC	2 cut(s)	49, 322
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	694, 784
BtsI	GCAGTG	1 cut(s)	936
BtsIMutI	CAGTG	1 cut(s)	936
Cac8I	GCNNGC	2 cut(s)	366, 792
CciI	TCATGA	1 cut(s)	708
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	47, 154
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	4 cut(s)	762, 1023, 1054, 1081
CviAII	CATG	5 cut(s)	43, 94, 709, 947, 1016
CviQI	GTAC	4 cut(s)	762, 1023, 1054, 1081
DdeI	CTNAG	6 cut(s)	126, 246, 609, 638, 732, 822
DpnI	GATC	1 cut(s)	696
DpnII	GATC	1 cut(s)	694
DraI	TTTAAA	1 cut(s)	918
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eam1104I	CTCTTC	3 cut(s)	59, 624, 994
EarI	CTCTTC	3 cut(s)	59, 624, 994
Ecl136II	GAGCTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	252
Eco57I	CTGAAG	3 cut(s)	875, 975, 1002
EcoICRI	GAGCTC	1 cut(s)	252
EcoRI	GAATTC	1 cut(s)	976
EcoRII	CCWGG	2 cut(s)	28, 346
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	5 cut(s)	46, 97, 712, 950, 1019
FaqI	GGGAC	1 cut(s)	1158
FatI	CATG	5 cut(s)	42, 93, 708, 946, 1015
Fnu4HI	GCNGC	2 cut(s)	362, 788
FokI	GGATG	2 cut(s)	701, 791
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	362, 788
FspBI	CTAG	1 cut(s)	951
GluI	GCNGC	2 cut(s)	362, 788
HaeIII	GGCC	2 cut(s)	49, 322
HapII	CCGG	5 cut(s)	323, 339, 554, 601, 725
HgaI	GACGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	5 cut(s)	46, 97, 712, 950, 1019
HinfI	GANTC	9 cut(s)	87, 119, 385, 550, 640, 714, 818, 1037, 1103
HpaII	CCGG	5 cut(s)	323, 339, 554, 601, 725
HphI	GGTGA	1 cut(s)	714
Hpy166II	GTNNAC	2 cut(s)	157, 310
Hpy188I	TCNGA	5 cut(s)	481, 493, 667, 823, 982
Hpy188III	TCNNGA	6 cut(s)	389, 530, 709, 854, 893, 911
Hpy8I	GTNNAC	2 cut(s)	157, 310
Hpy99I	CGWCG	2 cut(s)	301, 307
HpyAV	CCTTC	4 cut(s)	715, 899, 1020, 1105
HpyCH4III	ACNGT	3 cut(s)	272, 307, 899
HpyCH4IV	ACGT	2 cut(s)	312, 1147
HpyCH4V	TGCA	6 cut(s)	111, 310, 745, 941, 1043, 1154
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 742, 800, 809, 947, 992
HpyF3I	CTNAG	6 cut(s)	126, 246, 609, 638, 732, 822
HpySE526I	ACGT	2 cut(s)	312, 1147
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	5 cut(s)	46, 97, 712, 950, 1019
Kzo9I	GATC	1 cut(s)	694
LmnI	GCTCC	2 cut(s)	784, 882
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	1 cut(s)	951
MaeII	ACGT	2 cut(s)	312, 1147
MaeIII	GTNAC	5 cut(s)	143, 192, 203, 212, 272
MalI	GATC	1 cut(s)	696
MboI	GATC	1 cut(s)	694
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	3 cut(s)	36, 254, 312
MluCI	AATT	6 cut(s)	673, 700, 766, 919, 976, 1137
MlyI	GAGTC	6 cut(s)	96, 113, 559, 649, 827, 1046
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	699, 917, 1140
MslI	CAYNNNNRTG	2 cut(s)	951, 1018
MspI	CCGG	5 cut(s)	323, 339, 554, 601, 725
MspR9I	CCNGG	3 cut(s)	30, 340, 348
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	2 cut(s)	30, 348
MwoI	GCNNNNNNNGC	6 cut(s)	122, 742, 800, 809, 947, 992
NciI	CCSGG	1 cut(s)	340
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	694
NlaIII	CATG	5 cut(s)	46, 97, 712, 950, 1019
NlaIV	GGNNCC	6 cut(s)	35, 48, 344, 582, 786, 909
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	5 cut(s)	143, 192, 203, 212, 272
NspV	TTCGAA	1 cut(s)	923
PagI	TCATGA	1 cut(s)	708
PasI	CCCWGGG	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PctI	GAATGC	1 cut(s)	610
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	385, 714, 1103
PflMI	CCANNNNNTGG	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	363, 789
PleI	GAGTC	6 cut(s)	95, 113, 558, 648, 826, 1045
PpsI	GAGTC	6 cut(s)	95, 113, 558, 648, 826, 1045
Psp124BI	GAGCTC	1 cut(s)	254
Psp6I	CCWGG	2 cut(s)	28, 346
PspGI	CCWGG	2 cut(s)	28, 346
PspN4I	GGNNCC	6 cut(s)	35, 48, 344, 582, 786, 909
PspPI	GGNCC	2 cut(s)	47, 154
PstI	CTGCAG	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	694
RsaI	GTAC	4 cut(s)	763, 1024, 1055, 1082
RsaNI	GTAC	4 cut(s)	762, 1023, 1054, 1081
RseI	CAYNNNNRTG	2 cut(s)	951, 1018
SacI	GAGCTC	1 cut(s)	254
SaqAI	TTAA	3 cut(s)	699, 917, 1140
SatI	GCNGC	2 cut(s)	362, 788
Sau3AI	GATC	1 cut(s)	694
Sau96I	GGNCC	2 cut(s)	47, 154
SchI	GAGTC	6 cut(s)	96, 113, 559, 649, 827, 1046
ScrFI	CCNGG	3 cut(s)	30, 340, 348
SduI	GDGCHC	3 cut(s)	36, 254, 312
SfaNI	GCATC	1 cut(s)	769
SfcI	CTRYAG	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	923
SinI	GGWCC	1 cut(s)	154
SmiI	ATTTAAAT	1 cut(s)	918
SmiMI	CAYNNNNRTG	2 cut(s)	951, 1018
SmlI	CTYRAG	1 cut(s)	1048
SmoI	CTYRAG	1 cut(s)	1048
Sse9I	AATT	6 cut(s)	673, 700, 766, 919, 976, 1137
SsiI	CCGC	4 cut(s)	84, 426, 782, 788
SspMI	CTAG	1 cut(s)	951
SstI	GAGCTC	1 cut(s)	254
StyD4I	CCNGG	3 cut(s)	28, 338, 346
StyI	CCWWGG	1 cut(s)	93
SwaI	ATTTAAAT	1 cut(s)	918
TaaI	ACNGT	3 cut(s)	272, 307, 899
TaiI	ACGT	2 cut(s)	315, 1150
TaqI	TCGA	3 cut(s)	548, 923, 1117
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	6 cut(s)	673, 700, 766, 919, 976, 1137
TatI	WGTACW	2 cut(s)	761, 1022
TauI	GCSGC	1 cut(s)	790
TfiI	GAWTC	3 cut(s)	385, 714, 1103
Tru1I	TTAA	3 cut(s)	699, 917, 1140
Tru9I	TTAA	3 cut(s)	699, 917, 1140
TscAI	CASTG	1 cut(s)	943
TseFI	GTSAC	5 cut(s)	143, 192, 203, 212, 272
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	5 cut(s)	143, 192, 203, 212, 272
TspDTI	ATGAA	8 cut(s)	17, 71, 166, 695, 697, 989, 1032, 1116
TspRI	CASTG	1 cut(s)	943
Van91I	CCANNNNNTGG	1 cut(s)	43
VneI	GTGCAC	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	3 cut(s)	766, 919, 976
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.