Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010143

Physical Location & Seq

Genomic Coordinates Reverse (-)

21727202 .. 21730697

Gene Structure 3496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G253900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAATGGTTCTTCAAGAAATGAAGAAGCTGAGGCGCCACAACCAGAACGAGAGCACCAAAAGCGTCTCTGTGACTATTGTGGAAGCTCAATGGCTCTGCTATACTGCAGAGCCGACTCTGCCAAGCTCTGCTTCTTGTGCGACCGTGAGGTCCACTCAGCCAATCAGCTTTTCTCCAAGCACACTCGGTCACTGCTCTGTGACGCCTGTGACGGTTCCCCTGCCTCCATCTTCTGCACAACCGAGAGCTCTGTTCTGTGCCAGAACTGTGACTGGGAAAGCCACAACCTTTCGTCGTCCTCGGTGCACGACAGGAGGCCTCTGGAAGGGTTCAGTGGGTGCCCTTGTTTGAATGAGTTGCTTACAGTTGTTGGGTTTGAGAATATGGATAAAAAAGCTCTGCTTTTGAGTGATGAGAGCGGTGGTGGTGGAGGAGGAGGTGATGGGTTTTTGGGTTGTGGGGTTGATGGGTCTTTCGATTTGGATGATGGGTTTTCCGATTTTTTGGTTTGGGACACTCCCTCTGTTGTTAGTCTTGACGATTTGATTGTTAGCAATCCGGCTTACAAATTTCAGGCTATGGGGGTTCCTCCTCTGCCTAAGAATCGCAATGCTGCTTGTGGTCGACACAAGGAAGAAATATTTCGTCAGCTTCGTGTGCTTGTCAAGTCAGAACCCAACTTGTTTAGCGAAAATGTGGATGTTAAACCCCTTAAGTCCCTAGCTTCTGAACAAAACATGCAACGAGGAAGTTTGTTTACAGGTTTTGAGCATGATGCAGAGCCAACTGTATTTCCTGCTTATGAGGCACATGATTTTCAGTATAACGATTGTGGCGCAGCCGAAAAGCGAGAATCTTCTCCTAAAACATTTATAAGGAGCTACCTTCAGGAATGTTGTGTGGTTCCTGATAAACATTCATATAATGATGGCAGTGCAAGTCATGCTAATGATGGTCATGGGCATGGAGGGCAAATGAATTCTGAAGCCTCCTCAGCTTTTCCCAAAGTTGCTGCACATGAGTTAAGCAGCCAAAACAGAGAGACTGCTCTCTCGCGGTACAAGGAGAAGAAGAAAACAAGAAGGTATGAAAAGCACATCAGGTACGAATCGCGGAAGGTTCGGGCAGAAAGTAGGACAAGAATTAAAGGACGTTTTGCGAAGATGGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

392

Amino Acids

43.38

Weight (kDa)

6.03

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47890 AT2G47890 AT2G47890
fragaria_vesca	FvH4_2g24910 FvH4_2g24910
malus_domestica	MD03G1277600.v1.1 MD11G1299600.v1.1
prunus_persica	Prupe.8G253900_v2.0.a1 Prupe.8G253900_v2.0.a1
pyrus_communis	pycom03g22100 pycom11g26320
rosa_chinensis	RchiOBHm_Chr6g0292831
rosa_laevigata	RLG00000011989
rosa_multiflora	Rmu_sc0000639.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174670
rosa_rugosa	Rorug06G0230000
rosa_samantha	Rh6AG343300 Rh6BG350500 Rh6CG357500 Rh6DG343400
rosa_wichuraiana	Rw6G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	875
AasI	GACNNNNNNGTC	1 cut(s)	149
AccB1I	GGYRCC	2 cut(s)	34, 339
AccBSI	CCGCTC	1 cut(s)	420
AccI	GTMKAC	1 cut(s)	625
AccII	CGCG	2 cut(s)	1057, 1114
AciI	CCGC	3 cut(s)	420, 1057, 1114
AcsI	RAATTY	2 cut(s)	569, 979
AcuI	CTGAAG	2 cut(s)	872, 1005
AcyI	GRCGYC	2 cut(s)	35, 204
AfaI	GTAC	2 cut(s)	1061, 1106
AfiI	CCNNNNNNNGG	1 cut(s)	326
AflII	CTTAAG	1 cut(s)	713
AgsI	TTSAA	2 cut(s)	15, 352
AjuI	GAANNNNNNNTTGG	4 cut(s)	116, 148, 155, 187
Alw21I	GWGCWC	3 cut(s)	57, 251, 309
Alw26I	GTCTC	2 cut(s)	71, 1037
Alw44I	GTGCAC	1 cut(s)	305
AoxI	GGCC	1 cut(s)	317
ApaLI	GTGCAC	1 cut(s)	305
ApeKI	GCWGC	4 cut(s)	614, 839, 1013, 1029
ApoI	RAATTY	2 cut(s)	569, 979
Asp700I	GAANNNNTTC	1 cut(s)	642
AspLEI	GCGC	2 cut(s)	37, 839
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	151
BaeGI	GKGCMC	2 cut(s)	309, 344
BanI	GGYRCC	2 cut(s)	34, 339
BanII	GRGCYC	1 cut(s)	251
BarI	GAAGNNNNNNTAC	2 cut(s)	742, 774
Bbv12I	GWGCWC	3 cut(s)	57, 251, 309
BbvCI	CCTCAGC	2 cut(s)	30, 994
BbvI	GCAGC	4 cut(s)	601, 851, 1000, 1041
BccI	CCATC	7 cut(s)	236, 437, 461, 482, 923, 947, 1159
BcoDI	GTCTC	2 cut(s)	71, 1037
BfaI	CTAG	1 cut(s)	722
BfmI	CTRYAG	1 cut(s)	106
BfoI	RGCGCY	1 cut(s)	38
BfrI	CTTAAG	1 cut(s)	713
BisI	GCNGC	4 cut(s)	615, 840, 1014, 1030
BlsI	GCNGC	4 cut(s)	616, 841, 1015, 1031
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	5 cut(s)	36, 217, 341, 588, 906
BmrI	ACTGGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	766
BmuI	ACTGGG	1 cut(s)	283
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
Bpu10I	CCTNAGC	2 cut(s)	30, 994
BsaHI	GRCGYC	2 cut(s)	35, 204
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	616
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	490, 706
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	3 cut(s)	21, 171, 1008
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	4 cut(s)	447, 450, 582, 982
BseSI	GKGCMC	2 cut(s)	309, 344
BseXI	GCAGC	4 cut(s)	601, 851, 1000, 1041
BsgI	GTGCAG	2 cut(s)	220, 999
Bsh1236I	CGCG	2 cut(s)	1057, 1114
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	1 cut(s)	319
BshNI	GGYRCC	2 cut(s)	34, 339
BsiEI	CGRYCG	1 cut(s)	145
BsiHKAI	GWGCWC	3 cut(s)	57, 251, 309
BsiSI	CCGG	1 cut(s)	560
BslFI	GGGAC	2 cut(s)	527, 703
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	2 cut(s)	71, 1037
BsmBI	CGTCTC	1 cut(s)	71
BsmFI	GGGAC	2 cut(s)	527, 703
BsnI	GGCC	1 cut(s)	319
Bsp1286I	GDGCHC	4 cut(s)	57, 251, 309, 344
Bsp143I	GATC	1 cut(s)	1168
BspACI	CCGC	3 cut(s)	420, 1057, 1114
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	3 cut(s)	22, 170, 1007
BspFNI	CGCG	2 cut(s)	1057, 1114
BspLI	GGNNCC	5 cut(s)	36, 217, 341, 588, 906
BspMAI	CTGCAG	1 cut(s)	110
BspT107I	GGYRCC	2 cut(s)	34, 339
BspTI	CTTAAG	1 cut(s)	713
BsrBI	CCGCTC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	616
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	1168
BssNI	GRCGYC	2 cut(s)	35, 204
Bst4CI	ACNGT	5 cut(s)	146, 215, 269, 367, 790
BstACI	GRCGYC	2 cut(s)	35, 204
BstAFI	CTTAAG	1 cut(s)	713
BstAPI	GCANNNNNTGC	1 cut(s)	944
BstDEI	CTNAG	4 cut(s)	30, 157, 600, 994
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	490, 706
BstFNI	CGCG	2 cut(s)	1057, 1114
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	2 cut(s)	37, 839
BstKTI	GATC	1 cut(s)	1171
BstMAI	GTCTC	2 cut(s)	71, 1037
BstMBI	GATC	1 cut(s)	1168
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	8 cut(s)	61, 119, 138, 658, 806, 944, 970, 995
BstNSI	RCATGY	1 cut(s)	742
BstSFI	CTRYAG	1 cut(s)	106
BstSLI	GKGCMC	2 cut(s)	309, 344
BstUI	CGCG	2 cut(s)	1057, 1114
BstV1I	GCAGC	4 cut(s)	601, 851, 1000, 1041
BsuRI	GGCC	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	490, 706
BtsI	GCAGTG	2 cut(s)	191, 940
BtsIMutI	CAGTG	4 cut(s)	191, 340, 940, 1171
CfoI	GCGC	2 cut(s)	37, 839
Cfr13I	GGNCC	1 cut(s)	151
CseI	GACGC	2 cut(s)	53, 212
Csp6I	GTAC	2 cut(s)	1060, 1105
CviAII	CATG	7 cut(s)	739, 773, 812, 944, 959, 965, 1019
CviQI	GTAC	2 cut(s)	1060, 1105
DdeI	CTNAG	4 cut(s)	30, 157, 600, 994
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	1 cut(s)	1170
DpnII	GATC	1 cut(s)	1168
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	249
Eco57I	CTGAAG	2 cut(s)	872, 1005
EcoICRI	GAGCTC	1 cut(s)	249
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	979
EcoT38I	GRGCYC	1 cut(s)	251
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	71
FaeI	CATG	7 cut(s)	742, 776, 815, 947, 962, 968, 1022
FalI	AAGNNNNNCTT	4 cut(s)	116, 148, 387, 419
FaqI	GGGAC	2 cut(s)	527, 703
FatI	CATG	7 cut(s)	738, 772, 811, 943, 958, 964, 1018
FblI	GTMKAC	1 cut(s)	625
Fnu4HI	GCNGC	4 cut(s)	615, 840, 1014, 1030
FokI	GGATG	2 cut(s)	497, 713
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	4 cut(s)	615, 840, 1014, 1030
FspBI	CTAG	1 cut(s)	722
GlaI	GCGC	2 cut(s)	36, 838
GluI	GCNGC	4 cut(s)	615, 840, 1014, 1030
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	1 cut(s)	560
HgaI	GACGC	2 cut(s)	53, 212
HhaI	GCGC	2 cut(s)	37, 839
Hin1I	GRCGYC	2 cut(s)	35, 204
Hin1II	CATG	7 cut(s)	742, 776, 815, 947, 962, 968, 1022
Hin6I	GCGC	2 cut(s)	35, 837
HinP1I	GCGC	2 cut(s)	35, 837
HincII	GTYRAC	1 cut(s)	626
HindII	GTYRAC	1 cut(s)	626
HinfI	GANTC	4 cut(s)	116, 604, 854, 1109
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	4 cut(s)	154, 307, 626, 759
Hpy188I	TCNGA	4 cut(s)	499, 673, 730, 985
Hpy188III	TCNNGA	5 cut(s)	15, 323, 536, 890, 908
Hpy8I	GTNNAC	4 cut(s)	154, 307, 626, 759
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	4 cut(s)	320, 896, 1077, 1111
HpyCH4III	ACNGT	5 cut(s)	146, 215, 269, 367, 790
HpyCH4IV	ACGT	1 cut(s)	1153
HpyCH4V	TGCA	7 cut(s)	108, 237, 307, 742, 779, 938, 1016
HpyF10VI	GCNNNNNNNGC	8 cut(s)	61, 119, 138, 658, 806, 944, 970, 995
HpyF3I	CTNAG	4 cut(s)	30, 157, 600, 994
HpySE526I	ACGT	1 cut(s)	1153
Hsp92I	GRCGYC	2 cut(s)	35, 204
Hsp92II	CATG	7 cut(s)	742, 776, 815, 947, 962, 968, 1022
HspAI	GCGC	2 cut(s)	35, 837
KasI	GGCGCC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	1168
LmnI	GCTCC	1 cut(s)	879
Lsp1109I	GCAGC	4 cut(s)	601, 851, 1000, 1041
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	1 cut(s)	722
MaeII	ACGT	1 cut(s)	1153
MaeIII	GTNAC	5 cut(s)	71, 189, 200, 209, 269
MalI	GATC	1 cut(s)	1170
MbiI	CCGCTC	1 cut(s)	420
MboI	GATC	1 cut(s)	1168
MboII	GAAGA	8 cut(s)	3, 35, 223, 647, 849, 1081, 1084, 1174
MhlI	GDGCHC	4 cut(s)	57, 251, 309, 344
MluCI	AATT	3 cut(s)	569, 979, 1143
Mly113I	GGCGCC	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	4 cut(s)	705, 714, 1025, 1146
MslI	CAYNNNNRTG	2 cut(s)	948, 963
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	1 cut(s)	560
MvnI	CGCG	2 cut(s)	1057, 1114
MwoI	GCNNNNNNNGC	8 cut(s)	61, 119, 138, 658, 806, 944, 970, 995
NarI	GGCGCC	1 cut(s)	35
NdeII	GATC	1 cut(s)	1168
NlaIII	CATG	7 cut(s)	742, 776, 815, 947, 962, 968, 1022
NlaIV	GGNNCC	5 cut(s)	36, 217, 341, 588, 906
NmuCI	GTSAC	5 cut(s)	71, 189, 200, 209, 269
NspI	RCATGY	1 cut(s)	742
PceI	AGGCCT	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	652
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	3 cut(s)	604, 854, 1109
PkrI	GCNGC	4 cut(s)	616, 841, 1015, 1031
PleI	GAGTC	1 cut(s)	110
PluTI	GGCGCC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	110
PsiI	TTATAA	1 cut(s)	875
Psp124BI	GAGCTC	1 cut(s)	251
PspN4I	GGNNCC	5 cut(s)	36, 217, 341, 588, 906
PspPI	GGNCC	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	1061, 1106
RsaNI	GTAC	2 cut(s)	1060, 1105
RseI	CAYNNNNRTG	2 cut(s)	948, 963
SacI	GAGCTC	1 cut(s)	251
SalI	GTCGAC	1 cut(s)	624
SaqAI	TTAA	4 cut(s)	705, 714, 1025, 1146
SatI	GCNGC	4 cut(s)	615, 840, 1014, 1030
Sau3AI	GATC	1 cut(s)	1168
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	1 cut(s)	110
SduI	GDGCHC	4 cut(s)	57, 251, 309, 344
SfaNI	GCATC	1 cut(s)	766
SfcI	CTRYAG	1 cut(s)	106
SfoI	GGCGCC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	948, 963
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	3 cut(s)	569, 979, 1143
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	3 cut(s)	420, 1057, 1114
SspDI	GGCGCC	1 cut(s)	34
SspI	AATATT	1 cut(s)	642
SspMI	CTAG	1 cut(s)	722
SstI	GAGCTC	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	319
TaaI	ACNGT	5 cut(s)	146, 215, 269, 367, 790
TaiI	ACGT	1 cut(s)	1156
TaqI	TCGA	2 cut(s)	477, 625
TaqII	GACCGA	1 cut(s)	177
TasI	AATT	3 cut(s)	569, 979, 1143
TfiI	GAWTC	3 cut(s)	604, 854, 1109
Tru1I	TTAA	4 cut(s)	705, 714, 1025, 1146
Tru9I	TTAA	4 cut(s)	705, 714, 1025, 1146
TscAI	CASTG	3 cut(s)	198, 340, 940
TseFI	GTSAC	5 cut(s)	71, 189, 200, 209, 269
TseI	GCWGC	4 cut(s)	614, 839, 1013, 1029
Tsp45I	GTSAC	5 cut(s)	71, 189, 200, 209, 269
TspDTI	ATGAA	5 cut(s)	17, 36, 909, 992, 1104
TspRI	CASTG	3 cut(s)	198, 340, 940
Vha464I	CTTAAG	1 cut(s)	713
VneI	GTGCAC	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	151
XagI	CCTNNNNNAGG	1 cut(s)	324
XapI	RAATTY	2 cut(s)	569, 979
XceI	RCATGY	1 cut(s)	742
XmiI	GTMKAC	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.