Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007145

Physical Location & Seq

Genomic Coordinates Reverse (-)

19616975 .. 19617681

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTCCGTCTCTCTGTTCACTGCCTTCACCGTTCTCTCACTCTGTTTACACACTTCAACATCTGAGTTTCAGCTGTCCACCATATCAGCTGCACCTTCGTTCTTGCCTGAAGCTCCATCGAGTTTCTCAGCTTCTACCCCGGCCATGTCTCCAGATACCTCTCCCCTGTTCCCTACTCCAGGTTCAAGCGAAATGTCTCCTTCCCCGTCGGAATCGTCTATCATGCCGACAATCCCCTCAAGCCTTAGTCCACCAAACCCAGATGCTGTCACTCCTGATCCTCTGCTCGAAGTTTCTCCAGTTGGATCTCCTCTTCCAGCTTCTTCCTCTGTTTGTTTGGTCTCATCACAACTCTCATCTCTGCTTCTTGTCCTACTCATGTTGCTACTAGCTTTCTGCAGTTTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0009628 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

13.98

Weight (kDa)

4.05

Isoelectric Point (pI)

82.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47930
fragaria_vesca	FvH4_2g24771 FvH4_4g17060
malus_domestica	MD11G1298300.v1.1 MD16G1176200.v1.1
prunus_persica	Prupe.1G143000_v2.0.a1 Prupe.8G252700_v2.0.a1
pyrus_communis	pycom03g22010 pycom11g26190 pycom16g14760
rosa_chinensis	RchiOBHm_Chr4g0420861 RchiOBHm_Chr6g0292601
rosa_laevigata	RLG00000007732
rosa_multiflora	Rmu_sc0002006.1_g000016
rosa_roxburghii	Rroxscaffold_5G00363270
rosa_rugosa	Rorug04G0166500.1
rosa_samantha	Rh4BG231000 Rh4CG243000 Rh4DG226300 Rh6AG341400 Rh6BG348800 Rh6CG355700 Rh6DG341800
rosa_wichuraiana	Rw4G019730 Rw6G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	272, 313
AcoI	YGGCCR	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	57, 186
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	6 cut(s)	73, 89, 113, 131, 320, 392
AluI	AGCT	6 cut(s)	73, 89, 113, 131, 320, 392
Alw26I	GTCTC	4 cut(s)	13, 153, 201, 346
AlwI	GGATC	2 cut(s)	272, 313
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	4 cut(s)	13, 153, 201, 346
BfaI	CTAG	2 cut(s)	389, 409
BfmI	CTRYAG	1 cut(s)	397
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	2 cut(s)	140, 180
BmrFI	CCNGG	2 cut(s)	140, 180
BmsI	GCATC	1 cut(s)	253
BpmI	CTGGAG	3 cut(s)	135, 162, 282
BpuEI	CTTGAG	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	2 cut(s)	54, 141
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	4 cut(s)	13, 153, 201, 346
BsmBI	CGTCTC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	277, 305
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	55, 140
BspMAI	CTGCAG	1 cut(s)	401
BspPI	GGATC	2 cut(s)	272, 313
BspTNI	GGTCTC	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	2 cut(s)	277, 305
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	318
BstDEI	CTNAG	3 cut(s)	63, 127, 245
BstENI	CCTNNNNNAGG	1 cut(s)	177
BstKTI	GATC	2 cut(s)	280, 308
BstMAI	GTCTC	4 cut(s)	13, 153, 201, 346
BstMBI	GATC	2 cut(s)	277, 305
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	138, 178
BstSFI	CTRYAG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	143
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
CaiI	CAGNNNCTG	1 cut(s)	266
CviAII	CATG	3 cut(s)	145, 223, 379
CviJI	RGCY	8 cut(s)	73, 89, 113, 131, 143, 243, 320, 392
CviKI_1	RGCY	8 cut(s)	73, 89, 113, 131, 143, 243, 320, 392
DdeI	CTNAG	3 cut(s)	63, 127, 245
DpnI	GATC	2 cut(s)	279, 307
DpnII	GATC	2 cut(s)	277, 305
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	3 cut(s)	148, 226, 382
FaiI	YATR	4 cut(s)	83, 146, 224, 380
FatI	CATG	3 cut(s)	144, 222, 378
Fnu4HI	GCNGC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	389, 409
GluI	GCNGC	1 cut(s)	90
GsuI	CTGGAG	3 cut(s)	135, 162, 282
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	3 cut(s)	148, 226, 382
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	4 cut(s)	18, 47, 78, 251
Hpy188I	TCNGA	2 cut(s)	64, 211
Hpy188III	TCNNGA	2 cut(s)	152, 275
Hpy8I	GTNNAC	4 cut(s)	18, 47, 78, 251
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	3 cut(s)	34, 105, 210
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	92, 399
HpyF3I	CTNAG	3 cut(s)	63, 127, 245
Hsp92II	CATG	3 cut(s)	148, 226, 382
Kzo9I	GATC	2 cut(s)	277, 305
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	389, 409
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	279, 307
MboI	GATC	2 cut(s)	277, 305
MboII	GAAGA	3 cut(s)	305, 315, 397
MflI	RGATCY	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	189, 283
MnlI	CCTC	5 cut(s)	169, 247, 291, 321, 337
MspA1I	CMGCKG	2 cut(s)	73, 89
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	140, 180
MvaI	CCWGG	1 cut(s)	180
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	2 cut(s)	277, 305
NlaIII	CATG	3 cut(s)	148, 226, 382
NmuCI	GTSAC	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	401
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	305
PvuII	CAGCTG	2 cut(s)	73, 89
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	277, 305
ScrFI	CCNGG	2 cut(s)	140, 180
SetI	ASST	9 cut(s)	75, 91, 97, 115, 133, 161, 184, 322, 394
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
SspMI	CTAG	2 cut(s)	389, 409
StyD4I	CCNGG	2 cut(s)	138, 178
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	119, 288
TfiI	GAWTC	1 cut(s)	212
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	268
TspRI	CASTG	1 cut(s)	25
XagI	CCTNNNNNAGG	1 cut(s)	177
XspI	CTAG	2 cut(s)	389, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.