Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002006.1

Orthogroup ID

OG0007145

Physical Location & Seq

Genomic Coordinates Reverse (-)

87729 .. 88079

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002006.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggtctcacctctgctttcctttacttcaaaagcatctactatcacagccttacctgcattgttcactactcctcatccatcttctgtccatggtttgcctccagatatagctccacttttgccatctcctggtcctatggtgcctaatactccagctgataactccatacccaccattccttccaatccaagcccaccgaatccggatgaatcggcttcactcggaccttcttctgcattttcgcctttgccggcgtcctcagccacatctacagacttattttggactttaaacttggccgcttttgcaggtgcggcagcttatatattggtctctgcagcttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

11.59

Weight (kDa)

4.34

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47930
fragaria_vesca	FvH4_2g24771 FvH4_4g17060
malus_domestica	MD11G1298300.v1.1 MD16G1176200.v1.1
prunus_persica	Prupe.1G143000_v2.0.a1 Prupe.8G252700_v2.0.a1
pyrus_communis	pycom03g22010 pycom11g26190 pycom16g14760
rosa_chinensis	RchiOBHm_Chr4g0420861 RchiOBHm_Chr6g0292601
rosa_laevigata	RLG00000007732
rosa_multiflora	Rmu_sc0002006.1_g000016
rosa_roxburghii	Rroxscaffold_5G00363270
rosa_rugosa	Rorug04G0166500.1
rosa_samantha	Rh4BG231000 Rh4CG243000 Rh4DG226300 Rh6AG341400 Rh6BG348800 Rh6CG355700 Rh6DG341800
rosa_wichuraiana	Rw4G019730 Rw6G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
Acc36I	ACCTGC	2 cut(s)	64, 302
AccB1I	GGYRCC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	131
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	2 cut(s)	303, 317
AcoI	YGGCCR	1 cut(s)	300
AcyI	GRCGYC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	30
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	4 cut(s)	113, 158, 323, 344
AluI	AGCT	4 cut(s)	113, 158, 323, 344
Alw26I	GTCTC	2 cut(s)	10, 340
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	2 cut(s)	320, 341
AspS9I	GGNCC	2 cut(s)	134, 227
AvaII	GGWCC	2 cut(s)	134, 227
BanI	GGYRCC	1 cut(s)	142
BbvCI	CCTCAGC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	2 cut(s)	88, 133
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	2 cut(s)	10, 340
BfmI	CTRYAG	2 cut(s)	273, 339
BfuAI	ACCTGC	2 cut(s)	64, 302
BisI	GCNGC	4 cut(s)	303, 318, 321, 342
BlsI	GCNGC	4 cut(s)	304, 319, 322, 343
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	2 cut(s)	134, 227
BmgT120I	GGNCC	2 cut(s)	134, 227
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	44
BpmI	CTGGAG	2 cut(s)	87, 138
Bpu10I	CCTNAGC	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	257
BsaI	GGTCTC	2 cut(s)	10, 340
BsaJI	CCNNGG	1 cut(s)	91
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	253
BseAI	TCCGGA	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	2 cut(s)	76, 214
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	332
BshFI	GGCC	1 cut(s)	302
BshNI	GGYRCC	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	206, 254
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	2 cut(s)	10, 340
BsnI	GGCC	1 cut(s)	302
Bso31I	GGTCTC	2 cut(s)	10, 340
Bsp13I	TCCGGA	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	2 cut(s)	303, 317
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	1 cut(s)	275
BspEI	TCCGGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	343
BspMI	ACCTGC	2 cut(s)	64, 302
BspT107I	GGYRCC	1 cut(s)	142
BspTNI	GGTCTC	2 cut(s)	10, 340
BsrFI	RCCGGY	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	91
BssNI	GRCGYC	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	262, 348
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	76, 214
BstMAI	GTCTC	2 cut(s)	10, 340
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 263, 308, 317
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	2 cut(s)	273, 339
BstV1I	GCAGC	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	302
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	76, 214
BveI	ACCTGC	2 cut(s)	64, 302
Cac8I	GCNNGC	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	134, 227
CseI	GACGC	1 cut(s)	246
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	9 cut(s)	50, 113, 158, 195, 218, 266, 302, 323, 344
CviKI_1	RGCY	9 cut(s)	50, 113, 158, 195, 218, 266, 302, 323, 344
DdeI	CTNAG	2 cut(s)	262, 348
DraI	TTTAAA	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	91
Eco31I	GGTCTC	2 cut(s)	10, 340
Eco47I	GGWCC	2 cut(s)	134, 227
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	1 cut(s)	95
FaiI	YATR	6 cut(s)	93, 110, 140, 170, 327, 329
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	303, 318, 321, 342
FokI	GGATG	2 cut(s)	63, 221
Fsp4HI	GCNGC	4 cut(s)	303, 318, 321, 342
GluI	GCNGC	4 cut(s)	303, 318, 321, 342
GsuI	CTGGAG	2 cut(s)	87, 138
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	2 cut(s)	206, 254
HgaI	GACGC	1 cut(s)	246
Hin1I	GRCGYC	1 cut(s)	257
Hin1II	CATG	1 cut(s)	95
HinfI	GANTC	2 cut(s)	202, 212
HpaII	CCGG	2 cut(s)	206, 254
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	2 cut(s)	104, 206
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	2 cut(s)	192, 240
HpyCH4V	TGCA	4 cut(s)	59, 239, 311, 341
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 263, 308, 317
HpyF3I	CTNAG	2 cut(s)	262, 348
Hsp92I	GRCGYC	1 cut(s)	257
Hsp92II	CATG	1 cut(s)	95
Kpn2I	TCCGGA	1 cut(s)	205
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	8 cut(s)	69, 117, 117, 144, 168, 219, 267, 297
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	44
MboII	GAAGA	2 cut(s)	75, 225
MnlI	CCTC	4 cut(s)	21, 84, 111, 271
MroI	TCCGGA	1 cut(s)	205
MroNI	GCCGGC	1 cut(s)	253
MseI	TTAA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	2 cut(s)	206, 254
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	4 cut(s)	56, 263, 308, 317
NaeI	GCCGGC	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	91
NgoMIV	GCCGGC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	144
PaqCI	CACCTGC	1 cut(s)	302
PdiI	GCCGGC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	202, 212
PflMI	CCANNNNNTGG	1 cut(s)	131
PkrI	GCNGC	4 cut(s)	304, 319, 322, 343
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	2 cut(s)	134, 227
PstI	CTGCAG	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	4 cut(s)	303, 318, 321, 342
Sau96I	GGNCC	2 cut(s)	134, 227
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	8 cut(s)	13, 58, 115, 160, 232, 316, 325, 346
SfaNI	GCATC	1 cut(s)	44
SfcI	CTRYAG	2 cut(s)	273, 339
SinI	GGWCC	2 cut(s)	134, 227
SsiI	CCGC	2 cut(s)	303, 317
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	91
TauI	GCSGC	2 cut(s)	305, 320
TfiI	GAWTC	2 cut(s)	202, 212
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TseI	GCWGC	2 cut(s)	320, 341
TspDTI	ATGAA	1 cut(s)	225
Van91I	CCANNNNNTGG	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	134, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.