Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007145

Physical Location & Seq

Genomic Coordinates Forward (+)

48949092 .. 48949451

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG243000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGTCTTCATGGTCTCACCTCTGCTTTCCTTTACTTCAAAAGCATCTACTATCACAGCCTCACCTGCATTGTTCACTATTTCTCATCCATCTTCTGTCCAAGGTTTGGCTCCAGATATAGCTCCACTTTTGCCATCTCCTGGTCCTATGGTGCCTAATACTCCAGTTGATAACTCCATACCTACCATTCCTTCCAATCCAAGCCCTCCGAATCCGGATGAATCGGCTTCACTCGGACCTTCTTCTGCATTTTCGCCTTTGCCGGCGTCCTCAGCCACATCTACAGACTTATTTTGGACTTTAAACTTGGCCACTTTTGCAGGTGCGGCAGCTTATATATTGGTCTCTGCAGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

11.97

Weight (kDa)

4.05

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47930
fragaria_vesca	FvH4_2g24771 FvH4_4g17060
malus_domestica	MD11G1298300.v1.1 MD16G1176200.v1.1
prunus_persica	Prupe.1G143000_v2.0.a1 Prupe.8G252700_v2.0.a1
pyrus_communis	pycom03g22010 pycom11g26190 pycom16g14760
rosa_chinensis	RchiOBHm_Chr4g0420861 RchiOBHm_Chr6g0292601
rosa_laevigata	RLG00000007732
rosa_multiflora	Rmu_sc0002006.1_g000016
rosa_roxburghii	Rroxscaffold_5G00363270
rosa_rugosa	Rorug04G0166500.1
rosa_samantha	Rh4BG231000 Rh4CG243000 Rh4DG226300 Rh6AG341400 Rh6BG348800 Rh6CG355700 Rh6DG341800
rosa_wichuraiana	Rw4G019730 Rw6G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	73, 311
Acc36I	ACCTGC	2 cut(s)	73, 311
AccB1I	GGYRCC	1 cut(s)	151
AccB7I	CCANNNNNTGG	2 cut(s)	106, 140
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	1 cut(s)	326
AcoI	YGGCCR	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	106, 140
AgsI	TTSAA	1 cut(s)	39
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	3 cut(s)	122, 332, 353
AluI	AGCT	3 cut(s)	122, 332, 353
Alw26I	GTCTC	2 cut(s)	19, 349
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	2 cut(s)	329, 350
AspS9I	GGNCC	2 cut(s)	143, 236
AsuHPI	GGTGA	2 cut(s)	9, 54
AvaII	GGWCC	2 cut(s)	143, 236
BalI	TGGCCA	1 cut(s)	311
BanI	GGYRCC	1 cut(s)	151
BbvCI	CCTCAGC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	2 cut(s)	97, 142
BciT130I	CCWGG	1 cut(s)	141
BcoDI	GTCTC	2 cut(s)	19, 349
BfmI	CTRYAG	2 cut(s)	282, 348
BfuAI	ACCTGC	2 cut(s)	73, 311
BisI	GCNGC	3 cut(s)	327, 330, 351
BlsI	GCNGC	3 cut(s)	328, 331, 352
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	2 cut(s)	143, 236
BmgT120I	GGNCC	2 cut(s)	143, 236
BmiI	GGNNCC	2 cut(s)	111, 153
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	53
BpmI	CTGGAG	2 cut(s)	96, 147
Bpu10I	CCTNAGC	1 cut(s)	271
BsaHI	GRCGYC	1 cut(s)	266
BsaI	GGTCTC	2 cut(s)	19, 349
BsaJI	CCNNGG	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 140
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	164
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	2 cut(s)	85, 223
BseLI	CCNNNNNNNGG	2 cut(s)	106, 140
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	341
BshFI	GGCC	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	215, 263
BslI	CCNNNNNNNGG	2 cut(s)	106, 140
BsmAI	GTCTC	2 cut(s)	19, 349
BsnI	GGCC	1 cut(s)	311
Bso31I	GGTCTC	2 cut(s)	19, 349
Bsp13I	TCCGGA	1 cut(s)	214
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	284
BspEI	TCCGGA	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	111, 153
BspMAI	CTGCAG	1 cut(s)	352
BspMI	ACCTGC	2 cut(s)	73, 311
BspT107I	GGYRCC	1 cut(s)	151
BspTNI	GGTCTC	2 cut(s)	19, 349
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	100
BssNI	GRCGYC	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	271, 357
BstF5I	GGATG	2 cut(s)	85, 223
BstMAI	GTCTC	2 cut(s)	19, 349
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 272, 317, 326
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	2 cut(s)	282, 348
BstV1I	GCAGC	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	85, 223
BveI	ACCTGC	2 cut(s)	73, 311
Cac8I	GCNNGC	1 cut(s)	264
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	2 cut(s)	143, 236
CseI	GACGC	1 cut(s)	255
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	9 cut(s)	59, 110, 122, 204, 227, 275, 311, 332, 353
CviKI_1	RGCY	9 cut(s)	59, 110, 122, 204, 227, 275, 311, 332, 353
DdeI	CTNAG	2 cut(s)	271, 357
DraI	TTTAAA	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	100
Eco31I	GGTCTC	2 cut(s)	19, 349
Eco47I	GGWCC	2 cut(s)	143, 236
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	1 cut(s)	13
FaiI	YATR	6 cut(s)	11, 119, 149, 179, 336, 338
FatI	CATG	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	327, 330, 351
FokI	GGATG	2 cut(s)	72, 230
Fsp4HI	GCNGC	3 cut(s)	327, 330, 351
GluI	GCNGC	3 cut(s)	327, 330, 351
GsuI	CTGGAG	2 cut(s)	96, 147
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	2 cut(s)	215, 263
HgaI	GACGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	13
HinfI	GANTC	2 cut(s)	211, 221
HpaII	CCGG	2 cut(s)	215, 263
HphI	GGTGA	2 cut(s)	9, 54
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	2 cut(s)	210, 236
Hpy188III	TCNNGA	2 cut(s)	113, 215
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	2 cut(s)	201, 249
HpyCH4V	TGCA	4 cut(s)	68, 248, 320, 350
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 272, 317, 326
HpyF3I	CTNAG	2 cut(s)	271, 357
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	13
Kpn2I	TCCGGA	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	262
KroNI	GCCGGC	1 cut(s)	264
LmnI	GCTCC	2 cut(s)	115, 127
LpnPI	CCDG	8 cut(s)	78, 126, 126, 153, 177, 228, 276, 306
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	1 cut(s)	53
MboII	GAAGA	2 cut(s)	84, 234
MlsI	TGGCCA	1 cut(s)	311
MluNI	TGGCCA	1 cut(s)	311
MnlI	CCTC	4 cut(s)	30, 70, 216, 280
Mox20I	TGGCCA	1 cut(s)	311
MroI	TCCGGA	1 cut(s)	214
MroNI	GCCGGC	1 cut(s)	262
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	311
MspI	CCGG	2 cut(s)	215, 263
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	4 cut(s)	65, 272, 317, 326
NaeI	GCCGGC	1 cut(s)	264
NgoMIV	GCCGGC	1 cut(s)	262
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	111, 153
PaqCI	CACCTGC	2 cut(s)	73, 311
PdiI	GCCGGC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	211, 221
PflMI	CCANNNNNTGG	2 cut(s)	106, 140
PkrI	GCNGC	3 cut(s)	328, 331, 352
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	111, 153
PspPI	GGNCC	2 cut(s)	143, 236
PstI	CTGCAG	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	3 cut(s)	327, 330, 351
Sau96I	GGNCC	2 cut(s)	143, 236
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	9 cut(s)	22, 67, 106, 124, 184, 241, 325, 334, 355
SfaNI	GCATC	1 cut(s)	53
SfcI	CTRYAG	2 cut(s)	282, 348
SinI	GGWCC	2 cut(s)	143, 236
SsiI	CCGC	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	100
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	211, 221
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseI	GCWGC	2 cut(s)	329, 350
TspDTI	ATGAA	1 cut(s)	234
Van91I	CCANNNNNTGG	2 cut(s)	106, 140
VpaK11BI	GGWCC	2 cut(s)	143, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.