Rh6AG341400

Classical arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007145
Physical Location & Seq
Forward (+)
54102011 .. 54103022
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG341400.1

Sequence Viewer

Length: 429 bp
ATGGCTTCCTTTTGGTCCTTCATGGCAATGTTCATGGTTTTAATGGCTTATTCTTCTTCTTCTTCTTCTTCTTCTTCACTAGCTACTAAGATTTCCTCAATCTCTGCAGCACCTGCAGCTTTACCAGATGCTCCAGCCCCACTATCTTCCTCTCCAACCATATCCCCAGATATTTCTCCCTTGTTTCCTTCACCTTCTGGTGTGCCAATTTCTCCAAGTGAGTCATCACTGCCCACAATTCCATCAAGCCCAAGCCCACCAAACCCTGAAGCTACTGTTGCTGCTCCTGAACCAGAATTGGGTTTTTCACCATCCGGGTCTCCTATGCCAGTTTCTCATTCAGTTTCTGTTACTTCATCTCTGCCCCTACATGGAATTTTCTTTCTTGGGTTTCTGGTTTTCTATGTAATGCAGGTTTCTGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0008150 GO:0009628 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0050896 GO:0080167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

14.42

Weight (kDa)

4.35

Isoelectric Point (pI)

92.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 121
Acc36I ACCTGC 2 cut(s) 121, 403
AcsI RAATTY 1 cut(s) 375
AcuI CTGAAG 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 299, 371
AluBI AGCT 3 cut(s) 83, 119, 272
AluI AGCT 3 cut(s) 83, 119, 272
Alw26I GTCTC 1 cut(s) 324
AlwNI CAGNNNCTG 2 cut(s) 113, 347
ApeKI GCWGC 3 cut(s) 107, 116, 281
ApoI RAATTY 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 15
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 2 cut(s) 183, 300
AvaII GGWCC 1 cut(s) 15
BbvI GCAGC 3 cut(s) 119, 128, 268
BccI CCATC 2 cut(s) 250, 319
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 2 cut(s) 105, 114
BfuAI ACCTGC 2 cut(s) 121, 403
BisI GCNGC 3 cut(s) 108, 117, 282
BlsI GCNGC 3 cut(s) 109, 118, 283
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 316
BsaI GGTCTC 1 cut(s) 324
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 371
Bse1I ACTGG 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 33
BseGI GGATG 1 cut(s) 311
BseLI CCNNNNNNNGG 2 cut(s) 299, 371
BseMI GCAATG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 329
BseXI GCAGC 3 cut(s) 119, 128, 268
BsiSI CCGG 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 299, 371
BsmAI GTCTC 1 cut(s) 324
Bso31I GGTCTC 1 cut(s) 324
BspMAI CTGCAG 2 cut(s) 109, 118
BspMI ACCTGC 2 cut(s) 121, 403
BspTNI GGTCTC 1 cut(s) 324
BsrDI GCAATG 1 cut(s) 33
BsrI ACTGG 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 277
BstAPI GCANNNNNTGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 311
BstMAI GTCTC 1 cut(s) 324
BstMWI GCNNNNNNNGC 3 cut(s) 113, 116, 278
BstSCI CCNGG 1 cut(s) 314
BstSFI CTRYAG 2 cut(s) 105, 114
BstV1I GCAGC 3 cut(s) 119, 128, 268
BtsCI GGATG 1 cut(s) 311
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 227
BveI ACCTGC 2 cut(s) 121, 403
CaiI CAGNNNCTG 2 cut(s) 113, 347
Cfr13I GGNCC 1 cut(s) 15
CviAII CATG 3 cut(s) 22, 34, 371
CviJI RGCY 8 cut(s) 5, 47, 83, 119, 137, 249, 255, 272
CviKI_1 RGCY 8 cut(s) 5, 47, 83, 119, 137, 249, 255, 272
DdeI CTNAG 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 288
FaeI CATG 3 cut(s) 25, 37, 374
FaiI YATR 6 cut(s) 23, 35, 161, 326, 372, 405
FatI CATG 3 cut(s) 21, 33, 370
Fnu4HI GCNGC 3 cut(s) 108, 117, 282
FokI GGATG 1 cut(s) 298
Fsp4HI GCNGC 3 cut(s) 108, 117, 282
FspBI CTAG 1 cut(s) 80
GluI GCNGC 3 cut(s) 108, 117, 282
GsuI CTGGAG 1 cut(s) 117
HapII CCGG 1 cut(s) 315
Hin1II CATG 3 cut(s) 25, 37, 374
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 315
HphI GGTGA 2 cut(s) 183, 300
Hpy188III TCNNGA 1 cut(s) 287
HpyAV CCTTC 3 cut(s) 28, 198, 204
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 107, 116, 412
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 116, 278
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 3 cut(s) 25, 37, 374
LmnI GCTCC 2 cut(s) 136, 289
Lsp1109I GCAGC 3 cut(s) 119, 128, 268
LweI GCATC 1 cut(s) 118
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 349
MboII GAAGA 9 cut(s) 45, 48, 51, 54, 57, 60, 63, 66, 138
MluCI AATT 4 cut(s) 207, 237, 296, 375
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 2 cut(s) 106, 160
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 316
MwoI GCNNNNNNNGC 3 cut(s) 113, 116, 278
NciI CCSGG 1 cut(s) 316
NlaIII CATG 3 cut(s) 25, 37, 374
PaqCI CACCTGC 1 cut(s) 121
PkrI GCNGC 3 cut(s) 109, 118, 283
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PspPI GGNCC 1 cut(s) 15
PstI CTGCAG 2 cut(s) 109, 118
PstNI CAGNNNCTG 2 cut(s) 113, 347
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 3 cut(s) 108, 117, 282
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 316
SetI ASST 6 cut(s) 85, 115, 121, 196, 274, 417
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 2 cut(s) 105, 114
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 4 cut(s) 207, 237, 296, 375
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 314
TaaI ACNGT 1 cut(s) 277
TasI AATT 4 cut(s) 207, 237, 296, 375
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 1 cut(s) 234
TseI GCWGC 3 cut(s) 107, 116, 281
TspDTI ATGAA 3 cut(s) 10, 22, 345
TspRI CASTG 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 15
XapI RAATTY 1 cut(s) 375
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.