Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007145

Physical Location & Seq

Genomic Coordinates Forward (+)

46553975 .. 46554411

Gene Structure 437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39057

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTTCATCATTAGAATGGCCTCTTTTTGGTTCCATATAGTGCTCATTATGGTCTTCATGGTCTCACCTCTGCTTTCCTTTACTTCAAAAGCATCTACTATCACAGCCTCACCTGCATTGTTCACTATTTCTCATCCATCTTCTGTCCAAGGTTTGCCTCCAGATATAGCTCCACTTTTGCCATCTCCTGGTCCTATGGTGCCTAATACTCCAGCTGATAACTCCATACCTACCATTCCTTCCAATCCAAGCCCTCCGAATCCGGATGAATCGGCTTCACTCGGACCTTCTTCTGCATTTTCGCCTTTGCCGGCGTCCTCAGCCACATCTACAGACTTATTTTGGACTTTAAACTTGGCAGCTTTTGCAGGTGCGGCAGCTTATATATTGGTCTCTGCAGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

13.94

Weight (kDa)

4.72

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47930
fragaria_vesca	FvH4_2g24771 FvH4_4g17060
malus_domestica	MD11G1298300.v1.1 MD16G1176200.v1.1
prunus_persica	Prupe.1G143000_v2.0.a1 Prupe.8G252700_v2.0.a1
pyrus_communis	pycom03g22010 pycom11g26190 pycom16g14760
rosa_chinensis	RchiOBHm_Chr4g0420861 RchiOBHm_Chr6g0292601
rosa_laevigata	RLG00000007732
rosa_multiflora	Rmu_sc0002006.1_g000016
rosa_roxburghii	Rroxscaffold_5G00363270
rosa_rugosa	Rorug04G0166500.1
rosa_samantha	Rh4BG231000 Rh4CG243000 Rh4DG226300 Rh6AG341400 Rh6BG348800 Rh6CG355700 Rh6DG341800
rosa_wichuraiana	Rw4G019730 Rw6G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	121, 359
Acc36I	ACCTGC	2 cut(s)	121, 359
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	314
AfiI	CCNNNNNNNGG	2 cut(s)	27, 188
AgsI	TTSAA	1 cut(s)	87
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	5 cut(s)	170, 215, 362, 380, 401
AluI	AGCT	5 cut(s)	170, 215, 362, 380, 401
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	67, 397
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	3 cut(s)	359, 377, 398
AspS9I	GGNCC	2 cut(s)	191, 284
AsuHPI	GGTGA	2 cut(s)	57, 102
AvaII	GGWCC	2 cut(s)	191, 284
BanI	GGYRCC	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	371, 389
BccI	CCATC	2 cut(s)	145, 190
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	67, 397
BfmI	CTRYAG	2 cut(s)	330, 396
BfuAI	ACCTGC	2 cut(s)	121, 359
BisI	GCNGC	4 cut(s)	360, 375, 378, 399
BlsI	GCNGC	4 cut(s)	361, 376, 379, 400
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	2 cut(s)	191, 284
BmgT120I	GGNCC	2 cut(s)	191, 284
BmiI	GGNNCC	2 cut(s)	32, 201
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	46
BpmI	CTGGAG	2 cut(s)	144, 195
Bpu10I	CCTNAGC	1 cut(s)	319
BsaHI	GRCGYC	1 cut(s)	314
BsaI	GGTCTC	2 cut(s)	67, 397
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 188
Bse118I	RCCGGY	1 cut(s)	310
BseAI	TCCGGA	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	133, 271
BseLI	CCNNNNNNNGG	2 cut(s)	27, 188
BseMII	CTCAG	1 cut(s)	333
BseXI	GCAGC	2 cut(s)	371, 389
BshFI	GGCC	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	2 cut(s)	263, 311
BslI	CCNNNNNNNGG	2 cut(s)	27, 188
BsmAI	GTCTC	2 cut(s)	67, 397
BsnI	GGCC	1 cut(s)	20
Bso31I	GGTCTC	2 cut(s)	67, 397
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp13I	TCCGGA	1 cut(s)	262
BspACI	CCGC	1 cut(s)	374
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	332
BspEI	TCCGGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	32, 201
BspMAI	CTGCAG	1 cut(s)	400
BspMI	ACCTGC	2 cut(s)	121, 359
BspT107I	GGYRCC	1 cut(s)	199
BspTNI	GGTCTC	2 cut(s)	67, 397
BsrFI	RCCGGY	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	148
BssNI	GRCGYC	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	314
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	2 cut(s)	319, 405
BstF5I	GGATG	2 cut(s)	133, 271
BstMAI	GTCTC	2 cut(s)	67, 397
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 320, 365, 374
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	2 cut(s)	330, 396
BstV1I	GCAGC	2 cut(s)	371, 389
BstV2I	GAAGAC	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	133, 271
BveI	ACCTGC	2 cut(s)	121, 359
Cac8I	GCNNGC	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	191, 284
CseI	GACGC	1 cut(s)	303
CviAII	CATG	1 cut(s)	58
DdeI	CTNAG	2 cut(s)	319, 405
DraI	TTTAAA	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	148
Eco31I	GGTCTC	2 cut(s)	67, 397
Eco47I	GGWCC	2 cut(s)	191, 284
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	1 cut(s)	61
FaiI	YATR	9 cut(s)	36, 38, 50, 59, 167, 197, 227, 384, 386
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	4 cut(s)	360, 375, 378, 399
FokI	GGATG	2 cut(s)	120, 278
Fsp4HI	GCNGC	4 cut(s)	360, 375, 378, 399
GluI	GCNGC	4 cut(s)	360, 375, 378, 399
GsuI	CTGGAG	2 cut(s)	144, 195
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	2 cut(s)	263, 311
HgaI	GACGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	1 cut(s)	61
HinfI	GANTC	2 cut(s)	259, 269
HpaII	CCGG	2 cut(s)	263, 311
HphI	GGTGA	2 cut(s)	57, 102
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	2 cut(s)	258, 284
Hpy188III	TCNNGA	2 cut(s)	161, 263
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	2 cut(s)	249, 297
HpyCH4V	TGCA	4 cut(s)	116, 296, 368, 398
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 320, 365, 374
HpyF3I	CTNAG	2 cut(s)	319, 405
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	1 cut(s)	61
Kpn2I	TCCGGA	1 cut(s)	262
KroI	GCCGGC	1 cut(s)	310
KroNI	GCCGGC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	8 cut(s)	126, 174, 174, 201, 225, 276, 324, 354
Lsp1109I	GCAGC	2 cut(s)	371, 389
LweI	GCATC	1 cut(s)	101
MboII	GAAGA	3 cut(s)	46, 132, 282
MhlI	GDGCHC	1 cut(s)	45
MnlI	CCTC	6 cut(s)	31, 78, 118, 168, 264, 328
MroI	TCCGGA	1 cut(s)	262
MroNI	GCCGGC	1 cut(s)	310
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	263, 311
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	113, 320, 365, 374
NaeI	GCCGGC	1 cut(s)	312
NgoMIV	GCCGGC	1 cut(s)	310
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	32, 201
PaqCI	CACCTGC	2 cut(s)	121, 359
PdiI	GCCGGC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	259, 269
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	361, 376, 379, 400
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	32, 201
PspPI	GGNCC	2 cut(s)	191, 284
PstI	CTGCAG	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	4 cut(s)	360, 375, 378, 399
Sau96I	GGNCC	2 cut(s)	191, 284
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	2 cut(s)	330, 396
SinI	GGWCC	2 cut(s)	191, 284
SmiMI	CAYNNNNRTG	1 cut(s)	14
SsiI	CCGC	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	148
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	2 cut(s)	259, 269
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TseI	GCWGC	3 cut(s)	359, 377, 398
TspDTI	ATGAA	2 cut(s)	46, 282
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	191, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.