Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007145

Physical Location & Seq

Genomic Coordinates Forward (+)

22201309 .. 22201719

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTTCCTTTTGGACATCATTCTTGGCAATCTTCATACTTTCCATGGCTTCTCACTCCTCACTAGCCTTACAATCCCAGCCAGAAACACAGTTTTCAAGCATATCAGCTGCACCAGCATTTCTTCCAGGTGCTCCTCTATCTTCCTCTCCAACCCTTTCTCCTGACATCTCTCCGTTGTTTCCATCTCCTGGTGGTGTGCCTCTCTCTCCGTCTGAGTCTTCTCTTCCCACCATCCCTGCGAGTCCGAGCCCACCGAACCCGGAGGTCAATGTTGCTCCTGGACCAGACCAGGCTCTTGCTCCATCAGGCTCTCTCCCAGTTTCCTATGCAGTTTCTGTCACTTCATCTCTGCCTATAAATGTAATGTTGTTTCTTGGCTTGCTGGCTTCGTCTTTCGTGTATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0009628 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

13.8

Weight (kDa)

4.05

Isoelectric Point (pI)

82.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47930
fragaria_vesca	FvH4_2g24771 FvH4_4g17060
malus_domestica	MD11G1298300.v1.1 MD16G1176200.v1.1
prunus_persica	Prupe.1G143000_v2.0.a1 Prupe.8G252700_v2.0.a1
pyrus_communis	pycom03g22010 pycom11g26190 pycom16g14760
rosa_chinensis	RchiOBHm_Chr4g0420861 RchiOBHm_Chr6g0292601
rosa_laevigata	RLG00000007732
rosa_multiflora	Rmu_sc0002006.1_g000016
rosa_roxburghii	Rroxscaffold_5G00363270
rosa_rugosa	Rorug04G0166500.1
rosa_samantha	Rh4BG231000 Rh4CG243000 Rh4DG226300 Rh6AG341400 Rh6BG348800 Rh6CG355700 Rh6DG341800
rosa_wichuraiana	Rw4G019730 Rw6G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	99
AjnI	CCWGG	4 cut(s)	127, 190, 280, 291
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw21I	GWGCWC	1 cut(s)	136
AlwNI	CAGNNNCTG	1 cut(s)	338
ApeKI	GCWGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	284
AsuC2I	CCSGG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	3 cut(s)	193, 242, 313
BciT130I	CCWGG	4 cut(s)	129, 192, 282, 293
BcnI	CCSGG	1 cut(s)	263
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	5 cut(s)	129, 192, 263, 282, 293
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmrFI	CCNGG	5 cut(s)	129, 192, 263, 282, 293
BmrI	ACTGGG	1 cut(s)	314
BmuI	ACTGGG	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	320
BseBI	CCWGG	4 cut(s)	129, 192, 282, 293
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	2 cut(s)	49, 126
BseXI	GCAGC	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	136, 254
Bsp19I	CCATGG	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	4 cut(s)	129, 192, 282, 293
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	383, 387
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	4 cut(s)	129, 192, 282, 293
BstSCI	CCNGG	5 cut(s)	127, 190, 261, 280, 291
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	383, 387
CaiI	CAGNNNCTG	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	284
CviAII	CATG	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	284
EcoRII	CCWGG	4 cut(s)	127, 190, 280, 291
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	49
FaiI	YATR	6 cut(s)	38, 47, 104, 330, 359, 405
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	111
GsaI	CCCAGC	1 cut(s)	82
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	1 cut(s)	49
HinfI	GANTC	2 cut(s)	218, 244
HpaII	CCGG	1 cut(s)	263
Hpy188I	TCNGA	2 cut(s)	217, 249
Hpy188III	TCNNGA	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	113, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	49
LmnI	GCTCC	3 cut(s)	139, 283, 307
Lsp1109I	GCAGC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	340
MboII	GAAGA	5 cut(s)	25, 116, 135, 213, 218
MhlI	GDGCHC	2 cut(s)	136, 254
MlyI	GAGTC	2 cut(s)	227, 253
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	5 cut(s)	70, 147, 157, 213, 259
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	5 cut(s)	129, 192, 263, 282, 293
MvaI	CCWGG	4 cut(s)	129, 192, 282, 293
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	45
NlaIII	CATG	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	340
PflMI	CCANNNNNTGG	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	2 cut(s)	226, 252
PpsI	GAGTC	2 cut(s)	226, 252
Psp6I	CCWGG	4 cut(s)	127, 190, 280, 291
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	4 cut(s)	127, 190, 280, 291
PspPI	GGNCC	1 cut(s)	284
PstNI	CAGNNNCTG	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	110
SatI	GCNGC	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	2 cut(s)	227, 253
ScrFI	CCNGG	5 cut(s)	129, 192, 263, 282, 293
SduI	GDGCHC	2 cut(s)	136, 254
SetI	ASST	3 cut(s)	112, 133, 270
SinI	GGWCC	1 cut(s)	284
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	5 cut(s)	127, 190, 261, 280, 291
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	2 cut(s)	25, 336
TspGWI	ACGGA	2 cut(s)	165, 201
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	284
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.