Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007145

Physical Location & Seq

Genomic Coordinates Forward (+)

21664418 .. 21665186

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G252700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTTCCTTTTGCTCATTCTTGGCAATGTTCATGATCTTCATGGCTTCCCATTCTTCCCTTGCCTTGGAATCTCAACCAGAAACTCAGTTTTCAAGTATATCTGCTGCACCAGCATTGCTTCCAGGTGCTCCTCTATCTTCTTCTCCAACCTTATCTCCAGATATTTCTCCTTTATTTCCTTCTCCTGGTGGTGTGCCACTTTCTCCAGCCGAGTCATCTCTGCCCACCATCCCATCAAGCCCGAGCCCTCCAAATCCAGAGGACACAGTCGCTCCTGGACCAGGATTGGCTTTTGCACCATCAGGGTCTCTGCCAGTTTCCCATTCATCTCCTGTAACTTCATCTCTGCCTCTGAATGTGATTTTGTTTCTTGGCTTGCTGGTTTGCTCGTTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0009628 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

13.39

Weight (kDa)

4.07

Isoelectric Point (pI)

85.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47930
fragaria_vesca	FvH4_2g24771 FvH4_4g17060
malus_domestica	MD11G1298300.v1.1 MD16G1176200.v1.1
prunus_persica	Prupe.1G143000_v2.0.a1 Prupe.8G252700_v2.0.a1
pyrus_communis	pycom03g22010 pycom11g26190 pycom16g14760
rosa_chinensis	RchiOBHm_Chr4g0420861 RchiOBHm_Chr6g0292601
rosa_laevigata	RLG00000007732
rosa_multiflora	Rmu_sc0002006.1_g000016
rosa_roxburghii	Rroxscaffold_5G00363270
rosa_rugosa	Rorug04G0166500.1
rosa_samantha	Rh4BG231000 Rh4CG243000 Rh4DG226300 Rh6AG341400 Rh6BG348800 Rh6CG355700 Rh6DG341800
rosa_wichuraiana	Rw4G019730 Rw6G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	3 cut(s)	67, 188, 284
AgsI	TTSAA	1 cut(s)	96
AjnI	CCWGG	4 cut(s)	124, 187, 277, 283
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	315
Ama87I	CYCGRG	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	3 cut(s)	239, 244, 310
BciT130I	CCWGG	4 cut(s)	126, 189, 279, 285
BcoDI	GTCTC	1 cut(s)	315
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	4 cut(s)	126, 189, 279, 285
Bme18I	GGWCC	1 cut(s)	281
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	281
BmrFI	CCNGG	4 cut(s)	126, 189, 279, 285
BpmI	CTGGAG	2 cut(s)	144, 192
BsaI	GGTCTC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	4 cut(s)	142, 172, 259, 289
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 188, 284
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	2 cut(s)	33, 116
BseBI	CCWGG	4 cut(s)	126, 189, 279, 285
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	3 cut(s)	67, 188, 284
BseMI	GCAATG	2 cut(s)	33, 116
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	244
BslI	CCNNNNNNNGG	3 cut(s)	67, 188, 284
BsmAI	GTCTC	1 cut(s)	315
Bso31I	GGTCTC	1 cut(s)	315
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	133, 251
Bsp143I	GATC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	315
BsrDI	GCAATG	2 cut(s)	33, 116
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	4 cut(s)	126, 189, 279, 285
Bst4CI	ACNGT	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	1 cut(s)	87
BstENI	CCTNNNNNAGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	231
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	4 cut(s)	126, 189, 279, 285
BstSCI	CCNGG	4 cut(s)	124, 187, 277, 283
BstV1I	GCAGC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	380
CciI	TCATGA	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	281
CviAII	CATG	2 cut(s)	34, 43
CviJI	RGCY	7 cut(s)	5, 47, 212, 243, 249, 293, 378
CviKI_1	RGCY	7 cut(s)	5, 47, 212, 243, 249, 293, 378
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	282
EcoRII	CCWGG	4 cut(s)	124, 187, 277, 283
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	2 cut(s)	37, 46
FaiI	YATR	3 cut(s)	35, 44, 101
FatI	CATG	2 cut(s)	33, 42
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	108
GsuI	CTGGAG	2 cut(s)	144, 192
Hin1II	CATG	2 cut(s)	37, 46
HinfI	GANTC	2 cut(s)	71, 215
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	3 cut(s)	34, 161, 260
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	110, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	37, 46
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	136, 280
Lsp1109I	GCAGC	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	4 cut(s)	31, 48, 132, 135
MhlI	GDGCHC	2 cut(s)	133, 251
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	4 cut(s)	144, 256, 261, 363
MspR9I	CCNGG	4 cut(s)	126, 189, 279, 285
MvaI	CCWGG	4 cut(s)	126, 189, 279, 285
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	2 cut(s)	37, 46
NmeAIII	GCCGAG	1 cut(s)	238
PagI	TCATGA	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	71
PflFI	GACNNNGTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	4 cut(s)	124, 187, 277, 283
PspGI	CCWGG	4 cut(s)	124, 187, 277, 283
PspPI	GGNCC	1 cut(s)	281
PsyI	GACNNNGTC	1 cut(s)	269
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	4 cut(s)	126, 189, 279, 285
SduI	GDGCHC	2 cut(s)	133, 251
SetI	ASST	2 cut(s)	130, 155
SinI	GGWCC	1 cut(s)	281
StyD4I	CCNGG	4 cut(s)	124, 187, 277, 283
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	71
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	4 cut(s)	22, 31, 318, 333
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	281
XagI	CCTNNNNNAGG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.