Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007145

Physical Location & Seq

Genomic Coordinates Forward (+)

41516086 .. 41516493

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1298300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTTTCTTTTGGTCATCATTCTTGGCACTCTTCATACTTTTCATGGCTTCTCACTCCTCACTAGCCTTACAATCCCAACCAGAAACACAGTTTTCAAGCATATCAGCCGCACCTGCATTTCTCCCAGGTGCTCCTCTCTCTTCCTCTCCAACCCCATCTCCTGATATTTCTCCATTGTTTCCATCTCCTGGTGGTGTGCCTCTCTCTCCCTCTGAGTCTTCTCTCCCCACTATCCCATCGAGCCAGAGTCCGCCGGACCCGGACGTCGATGTTGCTCCTGATCAACCAGACCTGGCTCTTGCTCCATCAGGCTCTCTCCCAGTTTCCCATGCAGTTTCTGTCACTTCATCTCTGCCTATAAATGTAATGTTTTTTCTTGGCTTGCTGGTTTGGTCTGGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0009628 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

13.88

Weight (kDa)

4.05

Isoelectric Point (pI)

82.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47930
fragaria_vesca	FvH4_2g24771 FvH4_4g17060
malus_domestica	MD11G1298300.v1.1 MD16G1176200.v1.1
prunus_persica	Prupe.1G143000_v2.0.a1 Prupe.8G252700_v2.0.a1
pyrus_communis	pycom03g22010 pycom11g26190 pycom16g14760
rosa_chinensis	RchiOBHm_Chr4g0420861 RchiOBHm_Chr6g0292601
rosa_laevigata	RLG00000007732
rosa_multiflora	Rmu_sc0002006.1_g000016
rosa_roxburghii	Rroxscaffold_5G00363270
rosa_rugosa	Rorug04G0166500.1
rosa_samantha	Rh4BG231000 Rh4CG243000 Rh4DG226300 Rh6AG341400 Rh6BG348800 Rh6CG355700 Rh6DG341800
rosa_wichuraiana	Rw4G019730 Rw6G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	124
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	124
AccB7I	CCANNNNNTGG	1 cut(s)	191
AciI	CCGC	2 cut(s)	111, 254
AcyI	GRCGYC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	99
AjnI	CCWGG	3 cut(s)	127, 190, 294
Alw21I	GWGCWC	1 cut(s)	136
AlwNI	CAGNNNCTG	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	259
AsuC2I	CCSGG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	4 cut(s)	166, 193, 247, 316
BciT130I	CCWGG	3 cut(s)	129, 192, 296
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	263
BfaI	CTAG	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	4 cut(s)	129, 192, 263, 296
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	4 cut(s)	129, 192, 263, 296
BmrI	ACTGGG	1 cut(s)	317
BmuI	ACTGGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	323
BseBI	CCWGG	3 cut(s)	129, 192, 296
BseDI	CCNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	2 cut(s)	49, 126
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	257, 263
BslI	CCNNNNNNNGG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	2 cut(s)	111, 254
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	283
BssNI	GRCGYC	1 cut(s)	267
Bst2UI	CCWGG	3 cut(s)	129, 192, 296
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	2 cut(s)	38, 148
BstACI	GRCGYC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	216
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	3 cut(s)	129, 192, 296
BstSCI	CCNGG	4 cut(s)	127, 190, 261, 294
BstV2I	GAAGAC	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	386
CaiI	CAGNNNCTG	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	259
CviAII	CATG	2 cut(s)	46, 332
CviJI	RGCY	8 cut(s)	5, 50, 68, 110, 246, 299, 315, 384
CviKI_1	RGCY	8 cut(s)	5, 50, 68, 110, 246, 299, 315, 384
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eam1104I	CTCTTC	2 cut(s)	38, 148
EarI	CTCTTC	2 cut(s)	38, 148
EciI	GGCGGA	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	127, 190, 294
FaeI	CATG	2 cut(s)	49, 335
FaiI	YATR	5 cut(s)	38, 47, 104, 333, 362
FatI	CATG	2 cut(s)	45, 331
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	111
HapII	CCGG	2 cut(s)	257, 263
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	49, 335
HinfI	GANTC	2 cut(s)	218, 250
HpaII	CCGG	2 cut(s)	257, 263
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	2 cut(s)	164, 281
Hpy99I	CGWCG	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	119, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	49, 335
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	3 cut(s)	139, 283, 310
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	3 cut(s)	25, 135, 213
MhlI	GDGCHC	1 cut(s)	136
MlyI	GAGTC	2 cut(s)	227, 259
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	5 cut(s)	70, 147, 157, 213, 223
MspI	CCGG	2 cut(s)	257, 263
MspR9I	CCNGG	4 cut(s)	129, 192, 263, 296
MvaI	CCWGG	3 cut(s)	129, 192, 296
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	49, 335
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	343
PaqCI	CACCTGC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	2 cut(s)	226, 258
PpsI	GAGTC	2 cut(s)	226, 258
Psp6I	CCWGG	3 cut(s)	127, 190, 294
PspGI	CCWGG	3 cut(s)	127, 190, 294
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	341
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	2 cut(s)	227, 259
ScrFI	CCNGG	4 cut(s)	129, 192, 263, 296
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	4 cut(s)	118, 133, 270, 297
SinI	GGWCC	1 cut(s)	259
SsiI	CCGC	2 cut(s)	111, 254
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	4 cut(s)	127, 190, 261, 294
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	242, 270
TauI	GCSGC	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	3 cut(s)	25, 34, 339
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	259
XspI	CTAG	1 cut(s)	65
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.