Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007145

Physical Location & Seq

Genomic Coordinates Forward (+)

43252416 .. 43253090

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G019730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCCTCTTTTTGGTTCCATATGGTGCTCATTATGGCCTTCATGGTCTCACCTATGCTTTCCTTTACTTCAAAAGCATCTACTATCACAGCCTTACCTGCATTGCTCACTACTCCTCATCCATCTTCTGTCCATGGTTTGCCTCCAGATATAGCTCCACTTTTGCCATCTCCTGGTCCTATGGTGCCTAATACTCCAGCTGATAACTCCATACCCACCATTCCTTCCAATCCAAGCCCTCCGAATCCGGATGAATCGGCTTCACTCGGACCTTCTTCTGCATTTTCGCCTTTGCCGGCGTCCTCAGCCACATCTACAGACTTATTTTGGACTCTAAACTTGGCCGCTTTTGCAGGTGCGGCAGCTTATATATTGGTCTCTGCAGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

13.29

Weight (kDa)

4.7

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47930
fragaria_vesca	FvH4_2g24771 FvH4_4g17060
malus_domestica	MD11G1298300.v1.1 MD16G1176200.v1.1
prunus_persica	Prupe.1G143000_v2.0.a1 Prupe.8G252700_v2.0.a1
pyrus_communis	pycom03g22010 pycom11g26190 pycom16g14760
rosa_chinensis	RchiOBHm_Chr4g0420861 RchiOBHm_Chr6g0292601
rosa_laevigata	RLG00000007732
rosa_multiflora	Rmu_sc0002006.1_g000016
rosa_roxburghii	Rroxscaffold_5G00363270
rosa_rugosa	Rorug04G0166500.1
rosa_samantha	Rh4BG231000 Rh4CG243000 Rh4DG226300 Rh6AG341400 Rh6BG348800 Rh6CG355700 Rh6DG341800
rosa_wichuraiana	Rw4G019730 Rw6G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	344
Acc36I	ACCTGC	2 cut(s)	106, 344
AccB1I	GGYRCC	1 cut(s)	184
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	247
AciI	CCGC	2 cut(s)	345, 359
AcoI	YGGCCR	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	12, 173
AgsI	TTSAA	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	4 cut(s)	155, 200, 365, 386
AluI	AGCT	4 cut(s)	155, 200, 365, 386
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	2 cut(s)	52, 382
Aor13HI	TCCGGA	1 cut(s)	247
AoxI	GGCC	3 cut(s)	3, 36, 342
ApeKI	GCWGC	2 cut(s)	362, 383
AspS9I	GGNCC	2 cut(s)	176, 269
AsuHPI	GGTGA	1 cut(s)	42
AvaII	GGWCC	2 cut(s)	176, 269
BanI	GGYRCC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	2 cut(s)	130, 175
BciT130I	CCWGG	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	52, 382
BfmI	CTRYAG	2 cut(s)	315, 381
BfuAI	ACCTGC	2 cut(s)	106, 344
BisI	GCNGC	4 cut(s)	345, 360, 363, 384
BlsI	GCNGC	4 cut(s)	346, 361, 364, 385
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	2 cut(s)	176, 269
BmgT120I	GGNCC	2 cut(s)	176, 269
BmiI	GGNNCC	2 cut(s)	17, 186
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	86
BpmI	CTGGAG	2 cut(s)	129, 180
Bpu10I	CCTNAGC	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	299
BsaI	GGTCTC	2 cut(s)	52, 382
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 173
Bse118I	RCCGGY	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	101
BseAI	TCCGGA	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	118, 256
BseLI	CCNNNNNNNGG	2 cut(s)	12, 173
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	374
BshFI	GGCC	3 cut(s)	5, 38, 344
BshNI	GGYRCC	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	248, 296
BslI	CCNNNNNNNGG	2 cut(s)	12, 173
BsmAI	GTCTC	2 cut(s)	52, 382
BsnI	GGCC	3 cut(s)	5, 38, 344
Bso31I	GGTCTC	2 cut(s)	52, 382
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp13I	TCCGGA	1 cut(s)	247
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	2 cut(s)	345, 359
BspANI	GGCC	3 cut(s)	5, 38, 344
BspCNI	CTCAG	1 cut(s)	317
BspEI	TCCGGA	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	17, 186
BspMAI	CTGCAG	1 cut(s)	385
BspMI	ACCTGC	2 cut(s)	106, 344
BspT107I	GGYRCC	1 cut(s)	184
BspTNI	GGTCTC	2 cut(s)	52, 382
BsrDI	GCAATG	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	133
BssNI	GRCGYC	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	304, 390
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	118, 256
BstMAI	GTCTC	2 cut(s)	52, 382
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 305, 350, 359
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	2 cut(s)	315, 381
BstV1I	GCAGC	1 cut(s)	374
BsuRI	GGCC	3 cut(s)	5, 38, 344
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	118, 256
BveI	ACCTGC	2 cut(s)	106, 344
Cac8I	GCNNGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	176, 269
CseI	GACGC	1 cut(s)	288
CviAII	CATG	2 cut(s)	43, 134
DdeI	CTNAG	2 cut(s)	304, 390
EaeI	YGGCCR	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	133
Eco31I	GGTCTC	2 cut(s)	52, 382
Eco47I	GGWCC	2 cut(s)	176, 269
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	2 cut(s)	46, 137
FatI	CATG	2 cut(s)	42, 133
FauNDI	CATATG	1 cut(s)	21
Fnu4HI	GCNGC	4 cut(s)	345, 360, 363, 384
FokI	GGATG	2 cut(s)	105, 263
Fsp4HI	GCNGC	4 cut(s)	345, 360, 363, 384
GluI	GCNGC	4 cut(s)	345, 360, 363, 384
GsuI	CTGGAG	2 cut(s)	129, 180
HaeIII	GGCC	3 cut(s)	5, 38, 344
HapII	CCGG	2 cut(s)	248, 296
HgaI	GACGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	46, 137
HinfI	GANTC	3 cut(s)	244, 254, 331
HpaII	CCGG	2 cut(s)	248, 296
HphI	GGTGA	1 cut(s)	42
Hpy188I	TCNGA	2 cut(s)	243, 269
Hpy188III	TCNNGA	2 cut(s)	146, 248
HpyAV	CCTTC	3 cut(s)	49, 234, 282
HpyCH4V	TGCA	4 cut(s)	101, 281, 353, 383
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 305, 350, 359
HpyF3I	CTNAG	2 cut(s)	304, 390
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	2 cut(s)	46, 137
Kpn2I	TCCGGA	1 cut(s)	247
KroI	GCCGGC	1 cut(s)	295
KroNI	GCCGGC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	8 cut(s)	111, 159, 159, 186, 210, 261, 309, 339
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	1 cut(s)	86
MboII	GAAGA	2 cut(s)	117, 267
MhlI	GDGCHC	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	5 cut(s)	16, 126, 153, 249, 313
MroI	TCCGGA	1 cut(s)	247
MroNI	GCCGGC	1 cut(s)	295
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	2 cut(s)	248, 296
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	4 cut(s)	98, 305, 350, 359
NaeI	GCCGGC	1 cut(s)	297
NcoI	CCATGG	1 cut(s)	133
NdeI	CATATG	1 cut(s)	21
NgoMIV	GCCGGC	1 cut(s)	295
NlaIII	CATG	2 cut(s)	46, 137
NlaIV	GGNNCC	2 cut(s)	17, 186
PaqCI	CACCTGC	1 cut(s)	344
PdiI	GCCGGC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	244, 254
PflMI	CCANNNNNTGG	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	346, 361, 364, 385
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	17, 186
PspPI	GGNCC	2 cut(s)	176, 269
PstI	CTGCAG	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	200
SatI	GCNGC	4 cut(s)	345, 360, 363, 384
Sau96I	GGNCC	2 cut(s)	176, 269
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	8 cut(s)	55, 100, 157, 202, 274, 358, 367, 388
SfaNI	GCATC	1 cut(s)	86
SfcI	CTRYAG	2 cut(s)	315, 381
SinI	GGWCC	2 cut(s)	176, 269
SsiI	CCGC	2 cut(s)	345, 359
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	133
TauI	GCSGC	2 cut(s)	347, 362
TfiI	GAWTC	2 cut(s)	244, 254
TseI	GCWGC	2 cut(s)	362, 383
TspDTI	ATGAA	2 cut(s)	31, 267
Van91I	CCANNNNNTGG	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	176, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.