Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007145

Physical Location & Seq

Genomic Coordinates Reverse (-)

11248182 .. 11248904

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G143000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCCTCTTTTTGGTCCCATATAGTTTTTCTCATTATGGCTTTCATGGCCTCACCTCTGCTTTCCCTTCATTCAAAAGCCTCCTCTGCCTCATCTAGCATCTCAGCTTCACCAGCATTCTTGATCACCAATTTTCCTCCATCTTCTTTACAAGGATTGCCTCCAGAAATAGCTCCACTTTTGCCATCTCCTGGTCCTGTGGTTCCTGCTACTCCAACTGATTCATCTATCCCCACCATTCCCTCCAACCCTAGCCCTCCGAATCCGGACGACTTGGTTTCTCCTGGCCCCTACTCTTCACTCTCACCATTTGGGTCATTGCCAGCTTCCTCAGCAGCATCTATAAGCTTAATTTGGCCTTTAAAGCTGGCTGCTTTTGCAGGTTCAGCCGCATATGGTTATTGTACTTCTTGGAATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

14.31

Weight (kDa)

5.25

Isoelectric Point (pI)

71.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47930
fragaria_vesca	FvH4_2g24771 FvH4_4g17060
malus_domestica	MD11G1298300.v1.1 MD16G1176200.v1.1
prunus_persica	Prupe.1G143000_v2.0.a1 Prupe.8G252700_v2.0.a1
pyrus_communis	pycom03g22010 pycom11g26190 pycom16g14760
rosa_chinensis	RchiOBHm_Chr4g0420861 RchiOBHm_Chr6g0292601
rosa_laevigata	RLG00000007732
rosa_multiflora	Rmu_sc0002006.1_g000016
rosa_roxburghii	Rroxscaffold_5G00363270
rosa_rugosa	Rorug04G0166500.1
rosa_samantha	Rh4BG231000 Rh4CG243000 Rh4DG226300 Rh6AG341400 Rh6BG348800 Rh6CG355700 Rh6DG341800
rosa_wichuraiana	Rw4G019730 Rw6G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	191
AccIII	TCCGGA	1 cut(s)	265
AciI	CCGC	1 cut(s)	390
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	2 cut(s)	12, 191
AgsI	TTSAA	1 cut(s)	75
AjnI	CCWGG	2 cut(s)	190, 283
AluBI	AGCT	5 cut(s)	107, 173, 326, 348, 367
AluI	AGCT	5 cut(s)	107, 173, 326, 348, 367
Aor13HI	TCCGGA	1 cut(s)	265
AoxI	GGCC	4 cut(s)	3, 48, 286, 356
ApeKI	GCWGC	2 cut(s)	335, 371
AspS9I	GGNCC	3 cut(s)	15, 194, 287
AsuHPI	GGTGA	4 cut(s)	45, 102, 118, 297
AvaII	GGWCC	2 cut(s)	15, 194
BbvCI	CCTCAGC	1 cut(s)	331
BbvI	GCAGC	2 cut(s)	347, 358
BccI	CCATC	2 cut(s)	148, 193
BciT130I	CCWGG	2 cut(s)	192, 285
BclI	TGATCA	1 cut(s)	123
BfaI	CTAG	2 cut(s)	96, 252
BfuAI	ACCTGC	1 cut(s)	371
BisI	GCNGC	3 cut(s)	336, 372, 390
BlsI	GCNGC	3 cut(s)	337, 373, 391
Bme1390I	CCNGG	2 cut(s)	192, 285
Bme18I	GGWCC	2 cut(s)	15, 194
BmgT120I	GGNCC	3 cut(s)	15, 194, 287
BmiI	GGNNCC	3 cut(s)	17, 204, 289
BmrFI	CCNGG	2 cut(s)	192, 285
BmsI	GCATC	2 cut(s)	108, 347
BpmI	CTGGAG	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 191
Bse3DI	GCAATG	1 cut(s)	317
BseAI	TCCGGA	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	192, 285
BseLI	CCNNNNNNNGG	2 cut(s)	12, 191
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	2 cut(s)	117, 345
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	347, 358
BshFI	GGCC	4 cut(s)	5, 50, 288, 358
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	12, 191
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	4 cut(s)	5, 50, 288, 358
Bsp13I	TCCGGA	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	1 cut(s)	390
BspANI	GGCC	4 cut(s)	5, 50, 288, 358
BspCNI	CTCAG	2 cut(s)	116, 344
BspEI	TCCGGA	1 cut(s)	265
BspLI	GGNNCC	3 cut(s)	17, 204, 289
BspMI	ACCTGC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	317
BssMI	GATC	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	192, 285
Bst6I	CTCTTC	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	324, 369
BstDEI	CTNAG	2 cut(s)	103, 331
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 86, 113, 332, 364, 377, 386
BstNI	CCWGG	2 cut(s)	192, 285
BstSCI	CCNGG	2 cut(s)	190, 283
BstV1I	GCAGC	2 cut(s)	347, 358
BsuRI	GGCC	4 cut(s)	5, 50, 288, 358
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	2 cut(s)	324, 369
Cfr13I	GGNCC	3 cut(s)	15, 194, 287
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	1 cut(s)	46
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	2 cut(s)	103, 331
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
DraI	TTTAAA	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
Eco47I	GGWCC	2 cut(s)	15, 194
EcoRII	CCWGG	2 cut(s)	190, 283
FaeI	CATG	1 cut(s)	49
FaiI	YATR	7 cut(s)	21, 23, 38, 47, 344, 394, 396
FatI	CATG	1 cut(s)	45
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	336, 372, 390
Fsp4HI	GCNGC	3 cut(s)	336, 372, 390
FspBI	CTAG	2 cut(s)	96, 252
GluI	GCNGC	3 cut(s)	336, 372, 390
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	4 cut(s)	5, 50, 288, 358
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	3 cut(s)	221, 262, 415
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	4 cut(s)	45, 102, 118, 297
Hpy188I	TCNGA	2 cut(s)	261, 422
Hpy188III	TCNNGA	3 cut(s)	121, 164, 266
HpyAV	CCTTC	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 86, 113, 332, 364, 377, 386
HpyF3I	CTNAG	2 cut(s)	103, 331
Hsp92II	CATG	1 cut(s)	49
Kpn2I	TCCGGA	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	2 cut(s)	347, 358
LweI	GCATC	2 cut(s)	108, 347
MaeI	CTAG	2 cut(s)	96, 252
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	2 cut(s)	135, 288
MluCI	AATT	2 cut(s)	130, 351
MmeI	TCCRAC	2 cut(s)	239, 270
MroI	TCCGGA	1 cut(s)	265
MseI	TTAA	2 cut(s)	350, 362
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	192, 285
Mva1269I	GAATGC	1 cut(s)	116
MvaI	CCWGG	2 cut(s)	192, 285
MwoI	GCNNNNNNNGC	7 cut(s)	47, 86, 113, 332, 364, 377, 386
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	3 cut(s)	17, 204, 289
PctI	GAATGC	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	221, 262, 415
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	3 cut(s)	337, 373, 391
Psp6I	CCWGG	2 cut(s)	190, 283
PspGI	CCWGG	2 cut(s)	190, 283
PspN4I	GGNNCC	3 cut(s)	17, 204, 289
PspPI	GGNCC	3 cut(s)	15, 194, 287
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	350, 362
SatI	GCNGC	3 cut(s)	336, 372, 390
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	3 cut(s)	15, 194, 287
ScrFI	CCNGG	2 cut(s)	192, 285
SetI	ASST	7 cut(s)	58, 109, 175, 328, 350, 369, 385
SfaNI	GCATC	2 cut(s)	108, 347
SinI	GGWCC	2 cut(s)	15, 194
Sse9I	AATT	2 cut(s)	130, 351
SsiI	CCGC	1 cut(s)	390
SspMI	CTAG	2 cut(s)	96, 252
StyD4I	CCNGG	2 cut(s)	190, 283
TasI	AATT	2 cut(s)	130, 351
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	3 cut(s)	221, 262, 415
Tru1I	TTAA	2 cut(s)	350, 362
Tru9I	TTAA	2 cut(s)	350, 362
TseI	GCWGC	2 cut(s)	335, 371
TspDTI	ATGAA	3 cut(s)	34, 59, 213
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	2 cut(s)	15, 194
XspI	CTAG	2 cut(s)	96, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.