Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007145

Physical Location & Seq

Genomic Coordinates Forward (+)

20963897 .. 20965532

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTCATCATTAAAATGGCCTCTTTTTGGTTCCATACACTGCTCATTATGGCCTTCATGGTCTCACCTCTGCTTTCCTTCACTTCAAAAGCATCTACTATCACAGCATCACCTGCATTGTTCTCTACTCCTCATCCATCTTCTGTCCAAGGTTTGCCTCCAGATATAGCTCCACTTTTGCCATCTCCTGGTCCTGTGGTGCCTGATACTCCTAATGATAACTCCATACCCACCATTCCTTCCAATCCAAGCCCTCCGAATCCGGATGACTTGGTTTCACTTGGACCTTCTTCTGCATTTGCGCCTTTGCCTGCTTCTTCAGCCTCATCTACAGACTTATTTTGGACTATAAACTTGGCCGCCCTTGCAGGTGCGGCGGCTTCTATATATGCAGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

13.65

Weight (kDa)

4.38

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47930
fragaria_vesca	FvH4_2g24771 FvH4_4g17060
malus_domestica	MD11G1298300.v1.1 MD16G1176200.v1.1
prunus_persica	Prupe.1G143000_v2.0.a1 Prupe.8G252700_v2.0.a1
pyrus_communis	pycom03g22010 pycom11g26190 pycom16g14760
rosa_chinensis	RchiOBHm_Chr4g0420861 RchiOBHm_Chr6g0292601
rosa_laevigata	RLG00000007732
rosa_multiflora	Rmu_sc0002006.1_g000016
rosa_roxburghii	Rroxscaffold_5G00363270
rosa_rugosa	Rorug04G0166500.1
rosa_samantha	Rh4BG231000 Rh4CG243000 Rh4DG226300 Rh6AG341400 Rh6BG348800 Rh6CG355700 Rh6DG341800
rosa_wichuraiana	Rw4G019730 Rw6G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	121, 359
Acc36I	ACCTGC	2 cut(s)	121, 359
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	3 cut(s)	360, 374, 377
AcoI	YGGCCR	1 cut(s)	357
AcuI	CTGAAG	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	27, 188
AgsI	TTSAA	1 cut(s)	87
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	2 cut(s)	170, 395
AluI	AGCT	2 cut(s)	170, 395
Alw26I	GTCTC	1 cut(s)	67
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	3 cut(s)	18, 51, 357
ApeKI	GCWGC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	191, 284
AsuHPI	GGTGA	2 cut(s)	57, 102
AvaII	GGWCC	2 cut(s)	191, 284
BanI	GGYRCC	1 cut(s)	199
BccI	CCATC	2 cut(s)	145, 190
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	67
BfmI	CTRYAG	1 cut(s)	330
BfuAI	ACCTGC	2 cut(s)	121, 359
BisI	GCNGC	4 cut(s)	360, 375, 378, 393
BlsI	GCNGC	4 cut(s)	361, 376, 379, 394
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	2 cut(s)	191, 284
BmgT120I	GGNCC	2 cut(s)	191, 284
BmiI	GGNNCC	2 cut(s)	32, 201
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	2 cut(s)	101, 116
BpmI	CTGGAG	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 188
BseAI	TCCGGA	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	133, 271
BseLI	CCNNNNNNNGG	2 cut(s)	27, 188
BseRI	GAGGAG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	20, 53, 359
BshNI	GGYRCC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	2 cut(s)	27, 188
BsmAI	GTCTC	1 cut(s)	67
BsnI	GGCC	3 cut(s)	20, 53, 359
Bso31I	GGTCTC	1 cut(s)	67
Bsp13I	TCCGGA	1 cut(s)	262
BspACI	CCGC	3 cut(s)	360, 374, 377
BspANI	GGCC	3 cut(s)	20, 53, 359
BspEI	TCCGGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	32, 201
BspMI	ACCTGC	2 cut(s)	121, 359
BspT107I	GGYRCC	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	2 cut(s)	133, 271
BstHHI	GCGC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 320, 365, 374
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	330
BsuRI	GGCC	3 cut(s)	20, 53, 359
BtsCI	GGATG	2 cut(s)	133, 271
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	38
BveI	ACCTGC	2 cut(s)	121, 359
Cac8I	GCNNGC	1 cut(s)	312
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	191, 284
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	8 cut(s)	20, 53, 170, 252, 323, 359, 380, 395
CviKI_1	RGCY	8 cut(s)	20, 53, 170, 252, 323, 359, 380, 395
DdeI	CTNAG	1 cut(s)	399
EaeI	YGGCCR	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	67
Eco47I	GGWCC	2 cut(s)	191, 284
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	1 cut(s)	61
FaiI	YATR	9 cut(s)	36, 50, 59, 167, 227, 350, 386, 388, 390
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	4 cut(s)	360, 375, 378, 393
FokI	GGATG	2 cut(s)	120, 278
Fsp4HI	GCNGC	4 cut(s)	360, 375, 378, 393
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	4 cut(s)	360, 375, 378, 393
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	20, 53, 359
HapII	CCGG	1 cut(s)	263
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HinfI	GANTC	1 cut(s)	259
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	2 cut(s)	57, 102
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	2 cut(s)	161, 263
HpyAV	CCTTC	4 cut(s)	64, 88, 249, 297
HpyCH4V	TGCA	4 cut(s)	116, 296, 368, 392
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 320, 365, 374
HpyF3I	CTNAG	1 cut(s)	399
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	1 cut(s)	302
Kpn2I	TCCGGA	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	9 cut(s)	126, 174, 174, 201, 207, 216, 276, 324, 354
LweI	GCATC	2 cut(s)	101, 116
MboII	GAAGA	3 cut(s)	132, 282, 309
MnlI	CCTC	6 cut(s)	31, 78, 141, 168, 264, 334
MroI	TCCGGA	1 cut(s)	262
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	113, 320, 365, 374
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	32, 201
PaqCI	CACCTGC	2 cut(s)	121, 359
PfeI	GAWTC	1 cut(s)	259
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	361, 376, 379, 394
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	32, 201
PspPI	GGNCC	2 cut(s)	191, 284
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	4 cut(s)	360, 375, 378, 393
Sau96I	GGNCC	2 cut(s)	191, 284
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	7 cut(s)	70, 115, 154, 172, 289, 373, 397
SfaNI	GCATC	2 cut(s)	101, 116
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	191, 284
SmiMI	CAYNNNNRTG	1 cut(s)	14
SsiI	CCGC	3 cut(s)	360, 374, 377
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	148
TauI	GCSGC	3 cut(s)	362, 377, 380
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	1 cut(s)	392
TspDTI	ATGAA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	45
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	191, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.