Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007145

Physical Location & Seq

Genomic Coordinates Forward (+)

28824287 .. 28824691

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g26190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTTCCCTTTGGTCATCATTCTTGGCAATCTTCATAGTTTTCATGGCTTCTGACTCCTCACTAGCCTTACAATCCCAACCAGAAACACAGTTTTCAAGCATATCAGCCGCACCTGCATTTCTTCCAGGTGCTCCTCTCTCTTCCTCTCCAACCCTATCTCCTGATATTTCTCCATTGTTTCCATCTCCTGGTGGTGTGCCTCTCTCTCCCTCTGAGTCTCCTCTCCCCACCATCCCATCTAGCCAGAGTCCGCCGGACCCGGACGTCGATGTTGCTCATGAACCAGACCTGGCTCTTGCTCCATCAGGCTCTCTCCCAGTTTCCCATGCAGTTTCTGTCACTTCATCTCTGCCTATAAATGTAATGTTCTTTCTTGGCTTGCTGGTTTGGTCTGGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0009628 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

13.7

Weight (kDa)

4.05

Isoelectric Point (pI)

83.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47930
fragaria_vesca	FvH4_2g24771 FvH4_4g17060
malus_domestica	MD11G1298300.v1.1 MD16G1176200.v1.1
prunus_persica	Prupe.1G143000_v2.0.a1 Prupe.8G252700_v2.0.a1
pyrus_communis	pycom03g22010 pycom11g26190 pycom16g14760
rosa_chinensis	RchiOBHm_Chr4g0420861 RchiOBHm_Chr6g0292601
rosa_laevigata	RLG00000007732
rosa_multiflora	Rmu_sc0002006.1_g000016
rosa_roxburghii	Rroxscaffold_5G00363270
rosa_rugosa	Rorug04G0166500.1
rosa_samantha	Rh4BG231000 Rh4CG243000 Rh4DG226300 Rh6AG341400 Rh6BG348800 Rh6CG355700 Rh6DG341800
rosa_wichuraiana	Rw4G019730 Rw6G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	124
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	124
AccB7I	CCANNNNNTGG	1 cut(s)	191
AciI	CCGC	2 cut(s)	111, 254
AcyI	GRCGYC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	99
AjnI	CCWGG	3 cut(s)	127, 190, 291
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	225
AlwNI	CAGNNNCTG	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	259
AsuC2I	CCSGG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	4 cut(s)	193, 242, 247, 313
BciT130I	CCWGG	3 cut(s)	129, 192, 293
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	2 cut(s)	65, 243
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	4 cut(s)	129, 192, 263, 293
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	4 cut(s)	129, 192, 263, 293
BmrI	ACTGGG	1 cut(s)	314
BmuI	ACTGGG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	267
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	320
BseBI	CCWGG	3 cut(s)	129, 192, 293
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	3 cut(s)	49, 126, 213
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	257, 263
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	136
BspACI	CCGC	2 cut(s)	111, 254
BspCNI	CTCAG	1 cut(s)	208
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	320
BssNI	GRCGYC	1 cut(s)	267
Bst2UI	CCWGG	3 cut(s)	129, 192, 293
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	234
BstMAI	GTCTC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	3 cut(s)	129, 192, 293
BstSCI	CCNGG	4 cut(s)	127, 190, 261, 291
BtsCI	GGATG	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	383
CaiI	CAGNNNCTG	1 cut(s)	338
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	259
CviAII	CATG	3 cut(s)	46, 281, 329
CviJI	RGCY	8 cut(s)	5, 50, 68, 110, 246, 296, 312, 381
CviKI_1	RGCY	8 cut(s)	5, 50, 68, 110, 246, 296, 312, 381
DdeI	CTNAG	1 cut(s)	216
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
EciI	GGCGGA	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	127, 190, 291
FaeI	CATG	3 cut(s)	49, 284, 332
FaiI	YATR	6 cut(s)	38, 47, 104, 282, 330, 359
FatI	CATG	3 cut(s)	45, 280, 328
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	65, 243
GluI	GCNGC	1 cut(s)	111
HapII	CCGG	2 cut(s)	257, 263
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	49, 284, 332
HinfI	GANTC	3 cut(s)	56, 218, 250
HpaII	CCGG	2 cut(s)	257, 263
Hpy188I	TCNGA	2 cut(s)	55, 217
Hpy188III	TCNNGA	2 cut(s)	164, 281
Hpy99I	CGWCG	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	119, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	3 cut(s)	49, 284, 332
LmnI	GCTCC	2 cut(s)	139, 307
MaeI	CTAG	2 cut(s)	65, 243
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	340
MboII	GAAGA	3 cut(s)	25, 116, 135
MhlI	GDGCHC	1 cut(s)	136
MlyI	GAGTC	3 cut(s)	50, 227, 259
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	6 cut(s)	70, 147, 157, 213, 223, 234
MspI	CCGG	2 cut(s)	257, 263
MspR9I	CCNGG	4 cut(s)	129, 192, 263, 293
MvaI	CCWGG	3 cut(s)	129, 192, 293
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	263
NlaIII	CATG	3 cut(s)	49, 284, 332
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	340
PagI	TCATGA	1 cut(s)	280
PaqCI	CACCTGC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	3 cut(s)	50, 226, 258
PpsI	GAGTC	3 cut(s)	50, 226, 258
Psp6I	CCWGG	3 cut(s)	127, 190, 291
PspGI	CCWGG	3 cut(s)	127, 190, 291
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	338
SatI	GCNGC	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	3 cut(s)	50, 227, 259
ScrFI	CCNGG	4 cut(s)	129, 192, 263, 293
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	4 cut(s)	118, 133, 270, 294
SinI	GGWCC	1 cut(s)	259
SsiI	CCGC	2 cut(s)	111, 254
SspMI	CTAG	2 cut(s)	65, 243
StyD4I	CCNGG	4 cut(s)	127, 190, 261, 291
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	270
TauI	GCSGC	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	4 cut(s)	25, 34, 297, 336
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	259
XspI	CTAG	2 cut(s)	65, 243
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.