Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002308

Physical Location & Seq

Genomic Coordinates Forward (+)

19670378 .. 19673292

Gene Structure 2915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G48100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGATTCTCAGTTGAATCCTTCCAAGAGACGCAAGATAAGTGTCAGGCACAGATGCGTTGCGTGCTATAAGATGTTCAATAGACGAGAACACCTCGTTGAGCACATGAAGATTTCCTACCACTCACTTCACCAGCCTCGCTGTGGGGTTTGCCTCAAGCACTGTAAATCCTTCGAATCCGTGAGGGAACACCTTAACGTTCCAGACCATCTTTCCAAAGGAAACTGCAAAGCCATTTTCACTAAACGAGGCTGTACTCTCTGTCTTCAAATCTTTGAGGAGGCCTTTGCTCTCGCCGAGCATAAAAACAAGTGTCACCTCTCCCCACCTCGTCCTCTTGGAACATCTACCCAAAGGAATCCTTCTAGTTCACTTGCTGGTTCACGTCTCAAGGCTATGGCACTTGACTGTGAAATGGTTGGTGGTGGTGCTGATGGGACTATTGATCAGTGCGCATCGGTTTGCCTGGTTGACGATGACGAGAATGTGATCTTCTCCACTCACGTTCAACCACTGCTCCCTGTCACCGATTACAGGCACGAGATAACTGGATTGACTAAGGAAGATTTGAAGGATGGTATGCCACTTGAGCATGTACGAGAGAGAGTTTTTTCGTTCTTGTGCGGTGGACAGAATGATGGGGCTGGAAGGCTTCTTCTTGTTGGTCATGACCTTAGGCATGATATGAGTTGCTTGAAGCTTGAATACCCTAGCCATTTGTTGAGAGACACAGCAAAATACGTGCCGTTGATGAAGACAAATCTTGTAAGCCAATCGCTCAAGTACCTCACAAAGTCATATCTCGGATACAAGATCCAGTGCGGGAAGCACGAGGTTTACGAGGACTGTGTATCTGCGATGAGACTGTACAAGAGAATGCGGGATCAAGAGCATGTTTGTAGTGGAAAGGCAGAAGGGAATGGTCTGAACTCGCGGAAACAGAGCGATCTAGAGAAGATGAATGCGGAAGAGCTGTACCAAAAATCAACGTCAGAGTACCGGTGCTGGTGCCTTGACCGACTCAGCAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

344

Amino Acids

39.12

Weight (kDa)

8.69

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	134 - 290	2.8e-12	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100
fragaria_vesca	FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651
malus_domestica	MD14G1090000.v1.1 MD14G1090200.v1.1
prunus_persica	Prupe.1G564900_v2.0.a1 Prupe.1G565600_v2.0.a1 Prupe.8G245200_v2.0.a1
pyrus_communis	pycom14g08070 pycom14g08080
rosa_chinensis	RchiOBHm_Chr6g0291701
rosa_laevigata	RLG00000012097
rosa_multiflora	Rmu_sc0002226.1_g000018
rosa_roxburghii	Rroxscaffold_7G00175840
rosa_rugosa	Rorug06G0220700 Rorug06G0220900
rosa_samantha	Rh6AG333500 Rh6BG340300 Rh6BG340500 Rh6CG346700 Rh6DG333800 Rh6DG333900
rosa_wichuraiana	Rw6G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	454
AccB1I	GGYRCC	1 cut(s)	1008
AccII	CGCG	1 cut(s)	934
AciI	CCGC	5 cut(s)	624, 822, 880, 934, 965
AclI	AACGTT	1 cut(s)	198
AclWI	GGATC	2 cut(s)	808, 891
AfaI	GTAC	6 cut(s)	256, 597, 785, 869, 977, 998
AfiI	CCNNNNNNNGG	2 cut(s)	143, 534
AgeI	ACCGGT	1 cut(s)	999
AgsI	TTSAA	7 cut(s)	16, 79, 269, 509, 571, 697, 704
AjiI	CACGTC	1 cut(s)	386
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	2 cut(s)	700, 973
AluI	AGCT	2 cut(s)	700, 973
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	4 cut(s)	22, 392, 720, 856
AlwI	GGATC	2 cut(s)	808, 891
AoxI	GGCC	1 cut(s)	282
AsiGI	ACCGGT	1 cut(s)	999
AspLEI	GCGC	1 cut(s)	455
AsuHPI	GGTGA	3 cut(s)	122, 308, 517
AsuII	TTCGAA	1 cut(s)	174
AxyI	CCTNAGG	1 cut(s)	674
BanI	GGYRCC	1 cut(s)	1008
BarI	GAAGNNNNNNTAC	4 cut(s)	101, 133, 689, 721
BauI	CACGAG	2 cut(s)	539, 830
BbsI	GAAGAC	2 cut(s)	257, 761
Bbv12I	GWGCWC	1 cut(s)	105
BccI	CCATC	4 cut(s)	216, 428, 569, 632
BceAI	ACGGC	1 cut(s)	730
BciT130I	CCWGG	1 cut(s)	467
BciVI	GTATCC	1 cut(s)	800
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	4 cut(s)	22, 392, 720, 856
BfaI	CTAG	3 cut(s)	366, 711, 950
BfuI	GTATCC	1 cut(s)	800
Bme1390I	CCNGG	1 cut(s)	467
BmgBI	CACGTC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	1010
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	2 cut(s)	44, 464
BpiI	GAAGAC	2 cut(s)	257, 761
BplI	GAGNNNNNCTC	2 cut(s)	78, 110
Bpu14I	TTCGAA	1 cut(s)	174
BpuEI	CTTGAG	4 cut(s)	140, 374, 608, 764
BsaAI	YACGTR	1 cut(s)	742
BsaWI	WCCGGW	1 cut(s)	999
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 534
Bse118I	RCCGGY	1 cut(s)	999
Bse1I	ACTGG	2 cut(s)	553, 817
Bse21I	CCTNAGG	1 cut(s)	674
BseBI	CCWGG	1 cut(s)	467
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	2 cut(s)	143, 534
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	553, 817
BseRI	GAGGAG	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	934
BshFI	GGCC	1 cut(s)	284
BshNI	GGYRCC	1 cut(s)	1008
BshTI	ACCGGT	1 cut(s)	999
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	1000
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	143, 534
BsmAI	GTCTC	4 cut(s)	22, 392, 720, 856
BsmBI	CGTCTC	2 cut(s)	22, 392
BsmFI	GGGAC	1 cut(s)	451
BsmI	GAATGC	2 cut(s)	882, 967
BsnI	GGCC	1 cut(s)	284
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	867
Bsp143I	GATC	5 cut(s)	445, 489, 813, 883, 946
BspACI	CCGC	5 cut(s)	624, 822, 880, 934, 965
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	2 cut(s)	22, 1035
BspFNI	CGCG	1 cut(s)	934
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	1 cut(s)	1010
BspPI	GGATC	2 cut(s)	808, 891
BspQI	GCTCTTC	1 cut(s)	963
BspT104I	TTCGAA	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	1008
BsrFI	RCCGGY	1 cut(s)	999
BsrGI	TGTACA	1 cut(s)	867
BsrI	ACTGG	2 cut(s)	553, 817
BssAI	RCCGGY	1 cut(s)	999
BssMI	GATC	5 cut(s)	445, 489, 813, 883, 946
BssSI	CACGAG	2 cut(s)	539, 830
Bst2BI	CACGAG	2 cut(s)	539, 830
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	4 cut(s)	164, 410, 848, 867
Bst6I	CTCTTC	1 cut(s)	963
BstAUI	TGTACA	1 cut(s)	867
BstBAI	YACGTR	1 cut(s)	742
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	4 cut(s)	9, 558, 674, 1022
BstF5I	GGATG	1 cut(s)	580
BstFNI	CGCG	1 cut(s)	934
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	5 cut(s)	448, 492, 816, 886, 949
BstMAI	GTCTC	4 cut(s)	22, 392, 720, 856
BstMBI	GATC	5 cut(s)	445, 489, 813, 883, 946
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 589
BstNI	CCWGG	1 cut(s)	467
BstNSI	RCATGY	2 cut(s)	596, 896
BstSCI	CCNGG	1 cut(s)	465
BstUI	CGCG	1 cut(s)	934
BstV2I	GAAGAC	2 cut(s)	257, 761
BstX2I	RGATCY	1 cut(s)	813
BstYI	RGATCY	1 cut(s)	813
Bsu36I	CCTNAGG	1 cut(s)	674
BsuI	GTATCC	1 cut(s)	800
BsuRI	GGCC	1 cut(s)	284
BtgZI	GCGATG	1 cut(s)	872
BtrI	CACGTC	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	580
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	4 cut(s)	160, 455, 512, 824
Cac8I	GCNNGC	1 cut(s)	64
CciI	TCATGA	1 cut(s)	667
CfoI	GCGC	1 cut(s)	455
Cfr10I	RCCGGY	1 cut(s)	999
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	6 cut(s)	255, 596, 784, 868, 976, 997
CspAI	ACCGGT	1 cut(s)	999
CviAII	CATG	6 cut(s)	106, 593, 668, 680, 893, 1032
CviQI	GTAC	6 cut(s)	255, 596, 784, 868, 976, 997
DdeI	CTNAG	4 cut(s)	9, 558, 674, 1022
DpnI	GATC	5 cut(s)	447, 491, 815, 885, 948
DpnII	GATC	5 cut(s)	445, 489, 813, 883, 946
Eam1104I	CTCTTC	1 cut(s)	963
EarI	CTCTTC	1 cut(s)	963
Eco147I	AGGCCT	1 cut(s)	284
Eco81I	CCTNAGG	1 cut(s)	674
EcoRII	CCWGG	1 cut(s)	465
Esp3I	CGTCTC	2 cut(s)	22, 392
FaeI	CATG	6 cut(s)	109, 596, 671, 683, 896, 1035
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	6 cut(s)	105, 592, 667, 679, 892, 1031
FauI	CCCGC	2 cut(s)	815, 873
FbaI	TGATCA	1 cut(s)	445
FokI	GGATG	1 cut(s)	587
FspAI	RTGCGCAY	1 cut(s)	454
FspBI	CTAG	3 cut(s)	366, 711, 950
FspI	TGCGCA	1 cut(s)	454
GlaI	GCGC	1 cut(s)	454
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	1 cut(s)	1000
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	6 cut(s)	109, 596, 671, 683, 896, 1035
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	5 cut(s)	5, 16, 176, 358, 1020
HpaII	CCGG	1 cut(s)	1000
HphI	GGTGA	3 cut(s)	122, 308, 517
Hpy166II	GTNNAC	5 cut(s)	371, 383, 472, 629, 838
Hpy188I	TCNGA	3 cut(s)	806, 927, 994
Hpy188III	TCNNGA	4 cut(s)	203, 668, 887, 950
Hpy8I	GTNNAC	5 cut(s)	371, 383, 472, 629, 838
HpyAV	CCTTC	6 cut(s)	30, 181, 372, 565, 642, 908
HpyCH4III	ACNGT	4 cut(s)	164, 410, 848, 867
HpyCH4IV	ACGT	5 cut(s)	198, 385, 504, 741, 989
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 589
HpyF3I	CTNAG	4 cut(s)	9, 558, 674, 1022
HpySE526I	ACGT	5 cut(s)	198, 385, 504, 741, 989
Hsp92II	CATG	6 cut(s)	109, 596, 671, 683, 896, 1035
HspAI	GCGC	1 cut(s)	453
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	5 cut(s)	445, 489, 813, 883, 946
LguI	GCTCTTC	1 cut(s)	963
LmnI	GCTCC	1 cut(s)	522
LweI	GCATC	2 cut(s)	44, 464
MaeI	CTAG	3 cut(s)	366, 711, 950
MaeII	ACGT	5 cut(s)	198, 385, 504, 741, 989
MaeIII	GTNAC	2 cut(s)	314, 523
MalI	GATC	5 cut(s)	447, 491, 815, 885, 948
MboI	GATC	5 cut(s)	445, 489, 813, 883, 946
MboII	GAAGA	8 cut(s)	121, 257, 484, 575, 647, 766, 967, 980
MflI	RGATCY	1 cut(s)	813
MhlI	GDGCHC	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	1014
MseI	TTAA	1 cut(s)	195
MspI	CCGG	1 cut(s)	1000
MspR9I	CCNGG	1 cut(s)	467
Mva1269I	GAATGC	2 cut(s)	882, 967
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	934
MwoI	GCNNNNNNNGC	2 cut(s)	63, 589
NdeII	GATC	5 cut(s)	445, 489, 813, 883, 946
NlaIII	CATG	6 cut(s)	109, 596, 671, 683, 896, 1035
NlaIV	GGNNCC	1 cut(s)	1010
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	2 cut(s)	314, 523
NsbI	TGCGCA	1 cut(s)	454
NspI	RCATGY	2 cut(s)	596, 896
NspV	TTCGAA	1 cut(s)	174
PagI	TCATGA	1 cut(s)	667
PceI	AGGCCT	1 cut(s)	284
PciSI	GCTCTTC	1 cut(s)	963
PcsI	WCGNNNNNNNCGW	1 cut(s)	837
PctI	GAATGC	2 cut(s)	882, 967
PfeI	GAWTC	4 cut(s)	5, 16, 176, 358
PinAI	ACCGGT	1 cut(s)	999
PleI	GAGTC	1 cut(s)	1014
PpsI	GAGTC	1 cut(s)	1014
Ppu21I	YACGTR	1 cut(s)	742
Psp1406I	AACGTT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	1 cut(s)	1010
PsuI	RGATCY	1 cut(s)	813
RsaI	GTAC	6 cut(s)	256, 597, 785, 869, 977, 998
RsaNI	GTAC	6 cut(s)	255, 596, 784, 868, 976, 997
SapI	GCTCTTC	1 cut(s)	963
SaqAI	TTAA	1 cut(s)	195
Sau3AI	GATC	5 cut(s)	445, 489, 813, 883, 946
SchI	GAGTC	1 cut(s)	1014
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	44, 464
SfuI	TTCGAA	1 cut(s)	174
SmlI	CTYRAG	4 cut(s)	155, 389, 587, 779
SmoI	CTYRAG	4 cut(s)	155, 389, 587, 779
SseBI	AGGCCT	1 cut(s)	284
SsiI	CCGC	5 cut(s)	624, 822, 880, 934, 965
SspMI	CTAG	3 cut(s)	366, 711, 950
StuI	AGGCCT	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	465
TaaI	ACNGT	4 cut(s)	164, 410, 848, 867
TaiI	ACGT	5 cut(s)	201, 388, 507, 744, 992
TaqI	TCGA	1 cut(s)	174
TaqII	GACCGA	1 cut(s)	1032
TatI	WGTACW	2 cut(s)	254, 867
TfiI	GAWTC	4 cut(s)	5, 16, 176, 358
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	4 cut(s)	167, 455, 519, 824
TseFI	GTSAC	2 cut(s)	314, 523
Tsp45I	GTSAC	2 cut(s)	314, 523
TspDTI	ATGAA	3 cut(s)	122, 767, 974
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	4 cut(s)	167, 455, 519, 824
XbaI	TCTAGA	1 cut(s)	949
XceI	RCATGY	2 cut(s)	596, 896
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XspI	CTAG	3 cut(s)	366, 711, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.