Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002308

Physical Location & Seq

Genomic Coordinates Forward (+)

15216557 .. 15219806

Gene Structure 3250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012097

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAATCCGAACCCGACGACTTGCAGAAAACCCCAACACCCAGGCACAAATGTCCTGCCTGTTACAAGCAATATAAGAAGAAAGAACATCTCATTGAGCACATGAAGGTTGCTTTCCACTCAGCTCATGATCCTAGTTGTGGAGTGTGTAGAAAGCACTGCAAATCTTTTGAGTCATTGAGAGAACATCTTACCGGTCCATTGGCAAAAGCCAATTGCACGAAAATTTTCTCTGAAAAAGGGTGTGATTTATGTTTGAAGCTCTTTGATAGCCCTGCTTCTCTTAGCCAGCATAGAGAAATGTGTCTCCTATCTGCACCTGCTCCTATAGGAACAGTGGTAATTCCTTGTGCAGAATCTCAATCTTATATAAACTTGTGTGGTCAAAACCACATTGATAACCGTCCCGAAGCAATTGCAATGGATTGTGAAATGGTTGGCGGTGGAAGTGATGGATCACTGGACCTGTGTGCAAGGGTGTGCCTGACAGATGAAGATGAGAATATCCTATTCCACACCTATGTGCGGCCTCAAATTTCTATCACTAATTACAGATATGAAATTACTGGGTTAACAGAAGATCATCTTAGAAATGCCATGCCACTAAAAGAAGTCCACGAAAAAATCTTGCAAGTTTTGTACAATGGAGAGTCTATTGGGAGATCAAGGTTGGATGGGGGAAAGGCCAAGCTTCTTGTGGGGCATGATTTGGAGCATGATTTGGATTGCATGGGAATGTATTATCCTGACCACCTGCTGAGGGATACTGCAAAGTACCATCCACTGATGAAAACAAATCTAGTCAGTCACTCGCTTAAGTATCTCACCAGAACATATCTGGGGTATGATATCCAGTCTGGTATGCATGATCCTTATGAAGATTGTGTGGCTGTAATGAGACTGTACAAGAGATTTCGAGCCCTAGATCATCAGACAGAAGGCATTGTTGCATCACTTGCTACGAAGTATTCAAACGACATCCATGGGAATTTTGATTCTTGGACAACTGAAAAACTTGAGAAGATGACACCTGATGAGCTTTATGAATTGTCAAAACCAAACTACAAGTGCTGGTGTCTGGATAGAAGGCAAGCAGTGCAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

369

Amino Acids

41.92

Weight (kDa)

6.28

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	139 - 302	3.3e-12	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100
fragaria_vesca	FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651
malus_domestica	MD14G1090000.v1.1 MD14G1090200.v1.1
prunus_persica	Prupe.1G564900_v2.0.a1 Prupe.1G565600_v2.0.a1 Prupe.8G245200_v2.0.a1
pyrus_communis	pycom14g08070 pycom14g08080
rosa_chinensis	RchiOBHm_Chr6g0291701
rosa_laevigata	RLG00000012097
rosa_multiflora	Rmu_sc0002226.1_g000018
rosa_roxburghii	Rroxscaffold_7G00175840
rosa_rugosa	Rorug06G0220700 Rorug06G0220900
rosa_samantha	Rh6AG333500 Rh6BG340300 Rh6BG340500 Rh6CG346700 Rh6DG333800 Rh6DG333900
rosa_wichuraiana	Rw6G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	328, 762
Acc36I	ACCTGC	2 cut(s)	328, 762
AciI	CCGC	2 cut(s)	441, 526
AclWI	GGATC	3 cut(s)	125, 463, 863
AcsI	RAATTY	3 cut(s)	225, 534, 988
AfaI	GTAC	3 cut(s)	641, 776, 905
AfiI	CCNNNNNNNGG	3 cut(s)	140, 525, 760
AflII	CTTAAG	1 cut(s)	815
AgeI	ACCGGT	1 cut(s)	194
AgsI	TTSAA	2 cut(s)	259, 972
AjnI	CCWGG	1 cut(s)	41
AleI	CACNNNNGTG	1 cut(s)	521
AluBI	AGCT	4 cut(s)	125, 262, 691, 1039
AluI	AGCT	4 cut(s)	125, 262, 691, 1039
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	311, 892
AlwI	GGATC	3 cut(s)	125, 463, 863
AoxI	GGCC	2 cut(s)	527, 684
ApoI	RAATTY	3 cut(s)	225, 534, 988
AsiGI	ACCGGT	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	197, 463
AsuHPI	GGTGA	1 cut(s)	817
AvaII	GGWCC	2 cut(s)	197, 463
BanII	GRGCYC	1 cut(s)	922
Bbv12I	GWGCWC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	758
BccI	CCATC	3 cut(s)	446, 668, 786
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	757
BcoDI	GTCTC	2 cut(s)	311, 892
BfaI	CTAG	3 cut(s)	135, 800, 923
BfmI	CTRYAG	1 cut(s)	327
BfrI	CTTAAG	1 cut(s)	815
BfuAI	ACCTGC	2 cut(s)	328, 762
BfuI	GTATCC	1 cut(s)	757
BisI	GCNGC	1 cut(s)	527
BlsI	GCNGC	1 cut(s)	528
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	2 cut(s)	197, 463
BmgT120I	GGNCC	2 cut(s)	197, 463
BmrFI	CCNGG	1 cut(s)	43
BmrI	ACTGGG	1 cut(s)	576
BmsI	GCATC	1 cut(s)	959
BmuI	ACTGGG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	758
BpuEI	CTTGAG	1 cut(s)	1037
BsaJI	CCNNGG	2 cut(s)	41, 982
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 525, 760
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	3 cut(s)	465, 571, 853
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	2 cut(s)	41, 982
BseGI	GGATG	3 cut(s)	679, 778, 978
BseLI	CCNNNNNNNGG	3 cut(s)	140, 525, 760
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	2 cut(s)	135, 749
BseNI	ACTGG	3 cut(s)	465, 571, 853
BsgI	GTGCAG	2 cut(s)	300, 372
BshFI	GGCC	2 cut(s)	529, 686
BshTI	ACCGGT	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	3 cut(s)	140, 525, 760
BsmAI	GTCTC	2 cut(s)	311, 892
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	2 cut(s)	529, 686
Bsp1286I	GDGCHC	2 cut(s)	102, 922
Bsp1407I	TGTACA	2 cut(s)	639, 903
Bsp143I	GATC	6 cut(s)	130, 455, 580, 662, 868, 925
Bsp19I	CCATGG	1 cut(s)	982
BspACI	CCGC	2 cut(s)	441, 526
BspANI	GGCC	2 cut(s)	529, 686
BspCNI	CTCAG	2 cut(s)	134, 750
BspHI	TCATGA	1 cut(s)	127
BspMI	ACCTGC	2 cut(s)	328, 762
BspPI	GGATC	3 cut(s)	125, 463, 863
BspTI	CTTAAG	1 cut(s)	815
BsrDI	GCAATG	1 cut(s)	426
BsrFI	RCCGGY	1 cut(s)	194
BsrGI	TGTACA	2 cut(s)	639, 903
BsrI	ACTGG	3 cut(s)	465, 571, 853
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	41, 982
BssMI	GATC	6 cut(s)	130, 455, 580, 662, 868, 925
BssT1I	CCWWGG	1 cut(s)	982
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	3 cut(s)	337, 404, 903
BstAFI	CTTAAG	1 cut(s)	815
BstAPI	GCANNNNNTGC	2 cut(s)	956, 1096
BstAUI	TGTACA	2 cut(s)	639, 903
BstC8I	GCNNGC	2 cut(s)	290, 1092
BstDEI	CTNAG	5 cut(s)	121, 284, 587, 758, 1104
BstDSI	CCRYGG	1 cut(s)	982
BstF5I	GGATG	3 cut(s)	679, 778, 978
BstKTI	GATC	6 cut(s)	133, 458, 583, 665, 871, 928
BstMAI	GTCTC	2 cut(s)	311, 892
BstMBI	GATC	6 cut(s)	130, 455, 580, 662, 868, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	956, 1096
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	41
BstSFI	CTRYAG	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	2 cut(s)	529, 686
BtgI	CCRYGG	1 cut(s)	982
BtsCI	GGATG	3 cut(s)	679, 778, 978
BtsI	GCAGTG	2 cut(s)	157, 1101
BtsIMutI	CAGTG	5 cut(s)	157, 342, 458, 782, 1101
BveI	ACCTGC	2 cut(s)	328, 762
Cac8I	GCNNGC	2 cut(s)	290, 1092
CciI	TCATGA	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	197, 463
Csp6I	GTAC	3 cut(s)	640, 775, 904
CspAI	ACCGGT	1 cut(s)	194
CviAII	CATG	8 cut(s)	103, 128, 598, 704, 716, 730, 866, 983
CviQI	GTAC	3 cut(s)	640, 775, 904
DdeI	CTNAG	5 cut(s)	121, 284, 587, 758, 1104
DpnI	GATC	6 cut(s)	132, 457, 582, 664, 870, 927
DpnII	GATC	6 cut(s)	130, 455, 580, 662, 868, 925
Eco130I	CCWWGG	1 cut(s)	982
Eco24I	GRGCYC	1 cut(s)	922
Eco32I	GATATC	1 cut(s)	850
Eco47I	GGWCC	2 cut(s)	197, 463
EcoRII	CCWGG	1 cut(s)	41
EcoRV	GATATC	1 cut(s)	850
EcoT14I	CCWWGG	1 cut(s)	982
EcoT22I	ATGCAT	1 cut(s)	867
EcoT38I	GRGCYC	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	982
FaeI	CATG	8 cut(s)	106, 131, 601, 707, 719, 733, 869, 986
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	8 cut(s)	102, 127, 597, 703, 715, 729, 865, 982
Fnu4HI	GCNGC	1 cut(s)	527
FokI	GGATG	3 cut(s)	686, 765, 965
FriOI	GRGCYC	1 cut(s)	922
Fsp4HI	GCNGC	1 cut(s)	527
FspBI	CTAG	3 cut(s)	135, 800, 923
GluI	GCNGC	1 cut(s)	527
HaeIII	GGCC	2 cut(s)	529, 686
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	8 cut(s)	106, 131, 601, 707, 719, 733, 869, 986
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	5 cut(s)	5, 173, 356, 650, 995
HpaI	GTTAAC	1 cut(s)	573
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	817
Hpy166II	GTNNAC	2 cut(s)	573, 616
Hpy188I	TCNGA	3 cut(s)	10, 235, 933
Hpy188III	TCNNGA	4 cut(s)	128, 407, 746, 1079
Hpy8I	GTNNAC	2 cut(s)	573, 616
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	100, 932, 1080
HpyCH4III	ACNGT	3 cut(s)	337, 404, 903
HpyF10VI	GCNNNNNNNGC	2 cut(s)	956, 1096
HpyF3I	CTNAG	5 cut(s)	121, 284, 587, 758, 1104
Hsp92II	CATG	8 cut(s)	106, 131, 601, 707, 719, 733, 869, 986
KspAI	GTTAAC	1 cut(s)	573
Kzo9I	GATC	6 cut(s)	130, 455, 580, 662, 868, 925
LmnI	GCTCC	2 cut(s)	328, 712
LweI	GCATC	1 cut(s)	959
MaeI	CTAG	3 cut(s)	135, 800, 923
MaeIII	GTNAC	2 cut(s)	62, 806
MalI	GATC	6 cut(s)	132, 457, 582, 664, 870, 927
MboI	GATC	6 cut(s)	130, 455, 580, 662, 868, 925
MboII	GAAGA	5 cut(s)	91, 506, 590, 890, 1033
MfeI	CAATTG	2 cut(s)	214, 414
MhlI	GDGCHC	2 cut(s)	102, 922
MluCI	AATT	9 cut(s)	214, 225, 342, 414, 534, 547, 561, 988, 1046
MlyI	GAGTC	2 cut(s)	182, 659
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	2 cut(s)	540, 753
Mph1103I	ATGCAT	1 cut(s)	867
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	2 cut(s)	572, 816
MslI	CAYNNNNRTG	3 cut(s)	519, 521, 734
MspCI	CTTAAG	1 cut(s)	815
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	43
MunI	CAATTG	2 cut(s)	214, 414
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	956, 1096
NcoI	CCATGG	1 cut(s)	982
NdeII	GATC	6 cut(s)	130, 455, 580, 662, 868, 925
NlaIII	CATG	8 cut(s)	106, 131, 601, 707, 719, 733, 869, 986
NmuCI	GTSAC	1 cut(s)	806
NsiI	ATGCAT	1 cut(s)	867
OliI	CACNNNNGTG	1 cut(s)	521
PagI	TCATGA	1 cut(s)	127
PaqCI	CACCTGC	2 cut(s)	328, 762
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	3 cut(s)	5, 356, 995
PinAI	ACCGGT	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	528
PleI	GAGTC	2 cut(s)	181, 658
PpsI	GAGTC	2 cut(s)	181, 658
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspPI	GGNCC	2 cut(s)	197, 463
RsaI	GTAC	3 cut(s)	641, 776, 905
RsaNI	GTAC	3 cut(s)	640, 775, 904
RseI	CAYNNNNRTG	3 cut(s)	519, 521, 734
SaqAI	TTAA	2 cut(s)	572, 816
SatI	GCNGC	1 cut(s)	527
Sau3AI	GATC	6 cut(s)	130, 455, 580, 662, 868, 925
Sau96I	GGNCC	2 cut(s)	197, 463
SchI	GAGTC	2 cut(s)	182, 659
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	2 cut(s)	102, 922
SfaNI	GCATC	1 cut(s)	959
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	2 cut(s)	197, 463
SmiMI	CAYNNNNRTG	3 cut(s)	519, 521, 734
SmlI	CTYRAG	2 cut(s)	815, 1016
SmoI	CTYRAG	2 cut(s)	815, 1016
Sse9I	AATT	9 cut(s)	214, 225, 342, 414, 534, 547, 561, 988, 1046
SsiI	CCGC	2 cut(s)	441, 526
SspMI	CTAG	3 cut(s)	135, 800, 923
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	982
TaaI	ACNGT	3 cut(s)	337, 404, 903
TaqI	TCGA	1 cut(s)	916
TasI	AATT	9 cut(s)	214, 225, 342, 414, 534, 547, 561, 988, 1046
TatI	WGTACW	2 cut(s)	639, 903
TauI	GCSGC	1 cut(s)	529
TfiI	GAWTC	3 cut(s)	5, 356, 995
Tru1I	TTAA	2 cut(s)	572, 816
Tru9I	TTAA	2 cut(s)	572, 816
TscAI	CASTG	5 cut(s)	164, 342, 465, 789, 1101
TseFI	GTSAC	1 cut(s)	806
Tsp45I	GTSAC	1 cut(s)	806
TspDTI	ATGAA	6 cut(s)	119, 507, 573, 803, 891, 1059
TspRI	CASTG	5 cut(s)	164, 342, 465, 789, 1101
Vha464I	CTTAAG	1 cut(s)	815
VpaK11BI	GGWCC	2 cut(s)	197, 463
XapI	RAATTY	3 cut(s)	225, 534, 988
XcmI	CCANNNNNNNNNTGG	2 cut(s)	694, 835
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	3 cut(s)	135, 800, 923
Zsp2I	ATGCAT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.