Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002226.1

Orthogroup ID

OG0002308

Physical Location & Seq

Genomic Coordinates Reverse (-)

87741 .. 88022

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002226.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgaatctttggctttacaggtatgatatccagtctggtatgcatgatccttatgcagattgtgtggctgtaatgagactgtacaagagatttcgagccctagatcatctgacagaaggcattgttgcatcactggctacgaagtattcaaacatccatgggaattttgattcttggacaactgaaaaacttgagaagatgacacctgatgagctttatgaattgtcaaaaccaaactacaagtgctggtgtctggatagaaggcaagcactgcaaccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

93

Amino Acids

11.07

Weight (kDa)

6.81

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100
fragaria_vesca	FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651
malus_domestica	MD14G1090000.v1.1 MD14G1090200.v1.1
prunus_persica	Prupe.1G564900_v2.0.a1 Prupe.1G565600_v2.0.a1 Prupe.8G245200_v2.0.a1
pyrus_communis	pycom14g08070 pycom14g08080
rosa_chinensis	RchiOBHm_Chr6g0291701
rosa_laevigata	RLG00000012097
rosa_multiflora	Rmu_sc0002226.1_g000018
rosa_roxburghii	Rroxscaffold_7G00175840
rosa_rugosa	Rorug06G0220700 Rorug06G0220900
rosa_samantha	Rh6AG333500 Rh6BG340300 Rh6BG340500 Rh6CG346700 Rh6DG333800 Rh6DG333900
rosa_wichuraiana	Rw6G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	163
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	150
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	31, 138
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	31, 138
BsmAI	GTCTC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	46, 103
Bsp19I	CCATGG	1 cut(s)	157
BspPI	GGATC	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	31, 138
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	2 cut(s)	46, 103
BssT1I	CCWWGG	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	271
BstAUI	TGTACA	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	2 cut(s)	49, 106
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	46, 103
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 271
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	2 cut(s)	131, 269
Cac8I	GCNNGC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	2 cut(s)	44, 158
CviJI	RGCY	5 cut(s)	13, 68, 98, 137, 214
CviKI_1	RGCY	5 cut(s)	13, 68, 98, 137, 214
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	2 cut(s)	48, 105
DpnII	GATC	2 cut(s)	46, 103
Eco130I	CCWWGG	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	2 cut(s)	47, 161
FaiI	YATR	6 cut(s)	24, 41, 45, 54, 159, 219
FatI	CATG	2 cut(s)	43, 157
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	100
FspBI	CTAG	1 cut(s)	101
Hin1II	CATG	2 cut(s)	47, 161
HinfI	GANTC	2 cut(s)	4, 170
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	110, 255
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	4 cut(s)	43, 56, 128, 274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 271
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	47, 161
Kzo9I	GATC	2 cut(s)	46, 103
LpnPI	CCDG	7 cut(s)	4, 21, 44, 119, 219, 232, 239
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	101
MalI	GATC	2 cut(s)	48, 105
MboI	GATC	2 cut(s)	46, 103
MboII	GAAGA	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	2 cut(s)	163, 221
Mph1103I	ATGCAT	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	134, 271
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	2 cut(s)	46, 103
NlaIII	CATG	2 cut(s)	47, 161
NsiI	ATGCAT	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	4, 170
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
Sau3AI	GATC	2 cut(s)	46, 103
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	4 cut(s)	23, 208, 216, 280
SfaNI	GCATC	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	2 cut(s)	163, 221
SspMI	CTAG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	94
TasI	AATT	2 cut(s)	163, 221
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	4, 170
TscAI	CASTG	2 cut(s)	138, 276
TspDTI	ATGAA	2 cut(s)	17, 234
TspRI	CASTG	2 cut(s)	138, 276
XapI	RAATTY	1 cut(s)	163
XspI	CTAG	1 cut(s)	101
Zsp2I	ATGCAT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.