Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002308

Physical Location & Seq

Genomic Coordinates Reverse (-)

11475273 .. 11478792

Gene Structure 3520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1090200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGATTCCGAGCCAGACTCTCCAAAAACCAAAAGAACAAGGTACGAATGTGCTGCATGTTACAAGCAGTACAAGCAAAAGGAACATCTTTTCGAGCACATTAAGGGCTCCTTCCACTCAGTTCATCAGCCGAGATGTGGTGTGTGTAAAAAGCACTTCATGTCTTTTCAATCACTGAGGGAACATCTCACTGGCTCATTGGCAAAAGCATTTTGCAAGACGATTTTCACTGAACAAGGTTGCCATCTATGTCTGAAGCTTTTTGATAGCGCTACTTCTCGGAGCGAGCATAAAAACAAGTGTTGCCTGTCTGCACCCACTCCTACGGGAACAACAATGATGCCATGTGCAGAATCTAAATCTGATATAAACTTGAGCAATGAAGATCACGTTGGAGGGGGTCTTGAAGCAGTTGCTCTGGATTGTGAAATGGTTTGGGGTGGAAGTGATGGATCACTGGACATATGTGCAAGAGTGTGCATGATTGATGAAGATGAGAATATCCTCTTCCACACTTATGTGCAGCCCCAAATTGTTGTCACTAATTACAGATATGAAGTTACTGGGTTAATGGAGGAGCATCTTAGAAATGCCATGCCACTTGAAAAAGTGCAAGAGAAAATTTTGCGAATTTTATACAGTGGAAAGACCAAGGTTCTTGTGGGGCATAATTTGGACCGGGATATGGATTGCTTGAGATTCAATTATCCTGATTACCTGCTGAGGGATACTGCAAACTACCATCCGCTGATGAAAACAAATTTGGTCAGCCACTCACTCAAGTACCTCACACAAACATATCTAGGGTATGAGATACAGTCAGGTTCACATGATCTATATGTGGATTGTGTGTCTGTGATGAGACTGTATAAAAGGTTCCGTGCACTAGATCATGAGAGAGAAGGGAATCGGGCATCAGTTGCGACAACATGTGCAAAAGACATTTTGGAAAGTTTTGAGTCATTGAAAACCACCAACCTTGAGGAGATGGCAGTGAATGATCTTTATGAAATGTCAACGCCAAAGTACAAGTGTTGGTGCCTGGATTTAGTGCAAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

354

Amino Acids

40.42

Weight (kDa)

6.35

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	138 - 287	5.4e-08	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100
fragaria_vesca	FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651
malus_domestica	MD14G1090000.v1.1 MD14G1090200.v1.1
prunus_persica	Prupe.1G564900_v2.0.a1 Prupe.1G565600_v2.0.a1 Prupe.8G245200_v2.0.a1
pyrus_communis	pycom14g08070 pycom14g08080
rosa_chinensis	RchiOBHm_Chr6g0291701
rosa_laevigata	RLG00000012097
rosa_multiflora	Rmu_sc0002226.1_g000018
rosa_roxburghii	Rroxscaffold_7G00175840
rosa_rugosa	Rorug06G0220700 Rorug06G0220900
rosa_samantha	Rh6AG333500 Rh6BG340300 Rh6BG340500 Rh6CG346700 Rh6DG333800 Rh6DG333900
rosa_wichuraiana	Rw6G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	726
AccB1I	GGYRCC	1 cut(s)	1038
AciI	CCGC	1 cut(s)	746
AclWI	GGATC	1 cut(s)	460
AcsI	RAATTY	3 cut(s)	621, 630, 760
AcuI	CTGAAG	1 cut(s)	275
AfaI	GTAC	4 cut(s)	44, 71, 785, 1028
AfeI	AGCGCT	1 cut(s)	271
AfiI	CCNNNNNNNGG	3 cut(s)	137, 685, 724
AflIII	ACRYGT	1 cut(s)	929
AgsI	TTSAA	5 cut(s)	170, 407, 605, 703, 967
AjnI	CCWGG	1 cut(s)	1041
AjuI	GAANNNNNNNTTGG	4 cut(s)	375, 407, 746, 778
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw21I	GWGCWC	2 cut(s)	99, 886
Alw26I	GTCTC	1 cut(s)	856
Alw44I	GTGCAC	1 cut(s)	882
AlwI	GGATC	1 cut(s)	460
Aor51HI	AGCGCT	1 cut(s)	271
ApaLI	GTGCAC	1 cut(s)	882
ApeKI	GCWGC	2 cut(s)	53, 523
ApoI	RAATTY	3 cut(s)	621, 630, 760
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	676
AsuC2I	CCSGG	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	676
BaeGI	GKGCMC	1 cut(s)	886
BaeI	ACNNNNGTAYC	4 cut(s)	34, 67, 767, 800
BanI	GGYRCC	1 cut(s)	1038
BanII	GRGCYC	1 cut(s)	110
Bbv12I	GWGCWC	2 cut(s)	99, 886
BbvCI	CCTCAGC	1 cut(s)	722
BbvI	GCAGC	2 cut(s)	40, 535
BccI	CCATC	4 cut(s)	252, 443, 750, 982
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	1 cut(s)	1043
BciVI	GTATCC	1 cut(s)	721
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	1 cut(s)	856
BfaI	CTAG	2 cut(s)	803, 887
BfoI	RGCGCY	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	726
BfuI	GTATCC	1 cut(s)	721
BisI	GCNGC	2 cut(s)	54, 524
BlsI	GCNGC	2 cut(s)	55, 525
Bme1390I	CCNGG	2 cut(s)	680, 1043
Bme18I	GGWCC	1 cut(s)	676
BmgT120I	GGNCC	1 cut(s)	676
BmiI	GGNNCC	3 cut(s)	109, 878, 1040
BmrFI	CCNGG	2 cut(s)	680, 1043
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	3 cut(s)	330, 589, 923
BmuI	ACTGGG	1 cut(s)	573
BplI	GAGNNNNNCTC	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	722
BpuEI	CTTGAG	4 cut(s)	394, 715, 764, 1001
BpuMI	CCSGG	1 cut(s)	680
BsaJI	CCNNGG	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 685, 724
Bse1I	ACTGG	3 cut(s)	196, 462, 568
Bse3DI	GCAATG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	1043
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	1 cut(s)	742
BseLI	CCNNNNNNNGG	3 cut(s)	137, 685, 724
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	3 cut(s)	132, 167, 713
BseNI	ACTGG	3 cut(s)	196, 462, 568
BseRI	GAGGAG	2 cut(s)	590, 998
BseSI	GKGCMC	1 cut(s)	886
BseXI	GCAGC	2 cut(s)	40, 535
BsgI	GTGCAG	3 cut(s)	297, 369, 542
BshNI	GGYRCC	1 cut(s)	1038
BsiHKAI	GWGCWC	2 cut(s)	99, 886
BsiSI	CCGG	1 cut(s)	679
BslI	CCNNNNNNNGG	3 cut(s)	137, 685, 724
BsmAI	GTCTC	1 cut(s)	856
Bsp1286I	GDGCHC	3 cut(s)	99, 110, 886
Bsp143I	GATC	5 cut(s)	385, 452, 832, 889, 1000
BspACI	CCGC	1 cut(s)	746
BspCNI	CTCAG	3 cut(s)	131, 168, 714
BspHI	TCATGA	1 cut(s)	892
BspLI	GGNNCC	3 cut(s)	109, 878, 1040
BspMI	ACCTGC	1 cut(s)	726
BspPI	GGATC	1 cut(s)	460
BspT107I	GGYRCC	1 cut(s)	1038
BsrDI	GCAATG	1 cut(s)	385
BsrI	ACTGG	3 cut(s)	196, 462, 568
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	5 cut(s)	385, 452, 832, 889, 1000
BssT1I	CCWWGG	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	1043
Bst4CI	ACNGT	3 cut(s)	641, 819, 867
Bst6I	CTCTTC	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	920
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	4 cut(s)	118, 176, 584, 722
BstF5I	GGATG	1 cut(s)	742
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	5 cut(s)	388, 455, 835, 892, 1003
BstMAI	GTCTC	1 cut(s)	856
BstMBI	GATC	5 cut(s)	385, 452, 832, 889, 1000
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 920
BstNI	CCWGG	1 cut(s)	1043
BstNSI	RCATGY	2 cut(s)	60, 933
BstSCI	CCNGG	2 cut(s)	678, 1041
BstSLI	GKGCMC	1 cut(s)	886
BstV1I	GCAGC	2 cut(s)	40, 535
BsuI	GTATCC	1 cut(s)	721
BtsCI	GGATG	1 cut(s)	742
BtsI	GCAGTG	1 cut(s)	999
BtsIMutI	CAGTG	6 cut(s)	173, 189, 228, 455, 646, 999
BveI	ACCTGC	1 cut(s)	726
Cac8I	GCNNGC	1 cut(s)	287
CciI	TCATGA	1 cut(s)	892
CfoI	GCGC	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	676
Csp6I	GTAC	4 cut(s)	43, 70, 784, 1027
CspCI	CAANNNNNGTGG	2 cut(s)	961, 996
CviAII	CATG	8 cut(s)	57, 160, 345, 481, 595, 830, 893, 930
CviJI	RGCY	7 cut(s)	13, 108, 130, 195, 259, 526, 771
CviKI_1	RGCY	7 cut(s)	13, 108, 130, 195, 259, 526, 771
CviQI	GTAC	4 cut(s)	43, 70, 784, 1027
DdeI	CTNAG	4 cut(s)	118, 176, 584, 722
DpnI	GATC	5 cut(s)	387, 454, 834, 891, 1002
DpnII	GATC	5 cut(s)	385, 452, 832, 889, 1000
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	676
Eco47III	AGCGCT	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	1041
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	8 cut(s)	60, 163, 348, 484, 598, 833, 896, 933
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	8 cut(s)	56, 159, 344, 480, 594, 829, 892, 929
FauNDI	CATATG	1 cut(s)	464
Fnu4HI	GCNGC	2 cut(s)	54, 524
FokI	GGATG	1 cut(s)	729
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	54, 524
FspBI	CTAG	2 cut(s)	803, 887
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	2 cut(s)	54, 524
HaeII	RGCGCY	1 cut(s)	273
HapII	CCGG	1 cut(s)	679
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	8 cut(s)	60, 163, 348, 484, 598, 833, 896, 933
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	1017
HindII	GTYRAC	1 cut(s)	1017
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	6 cut(s)	5, 17, 353, 699, 907, 959
HpaII	CCGG	1 cut(s)	679
Hpy166II	GTNNAC	3 cut(s)	827, 884, 1017
Hpy188I	TCNGA	4 cut(s)	10, 255, 282, 364
Hpy188III	TCNNGA	4 cut(s)	404, 419, 710, 893
Hpy8I	GTNNAC	3 cut(s)	827, 884, 1017
HpyAV	CCTTC	2 cut(s)	121, 896
HpyCH4III	ACNGT	3 cut(s)	641, 819, 867
HpyCH4IV	ACGT	2 cut(s)	390, 1058
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 920
HpyF3I	CTNAG	4 cut(s)	118, 176, 584, 722
HpySE526I	ACGT	2 cut(s)	390, 1058
Hsp92II	CATG	8 cut(s)	60, 163, 348, 484, 598, 833, 896, 933
HspAI	GCGC	1 cut(s)	270
Kzo9I	GATC	5 cut(s)	385, 452, 832, 889, 1000
LmnI	GCTCC	3 cut(s)	113, 282, 577
Lsp1109I	GCAGC	2 cut(s)	40, 535
LweI	GCATC	3 cut(s)	330, 589, 923
MaeI	CTAG	2 cut(s)	803, 887
MaeII	ACGT	2 cut(s)	390, 1058
MaeIII	GTNAC	3 cut(s)	59, 538, 559
MalI	GATC	5 cut(s)	387, 454, 834, 891, 1002
MboI	GATC	5 cut(s)	385, 452, 832, 889, 1000
MboII	GAAGA	3 cut(s)	395, 499, 503
MhlI	GDGCHC	3 cut(s)	99, 110, 886
MluCI	AATT	7 cut(s)	531, 544, 621, 630, 670, 703, 760
MlyI	GAGTC	2 cut(s)	11, 968
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	7 cut(s)	171, 389, 515, 568, 717, 797, 976
MseI	TTAA	2 cut(s)	102, 569
MslI	CAYNNNNRTG	2 cut(s)	516, 518
MspA1I	CMGCKG	1 cut(s)	748
MspI	CCGG	1 cut(s)	679
MspR9I	CCNGG	2 cut(s)	680, 1043
MvaI	CCWGG	1 cut(s)	1043
MwoI	GCNNNNNNNGC	2 cut(s)	73, 920
NciI	CCSGG	1 cut(s)	680
NdeI	CATATG	1 cut(s)	464
NdeII	GATC	5 cut(s)	385, 452, 832, 889, 1000
NlaIII	CATG	8 cut(s)	60, 163, 348, 484, 598, 833, 896, 933
NlaIV	GGNNCC	3 cut(s)	109, 878, 1040
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	538
NspI	RCATGY	2 cut(s)	60, 933
OliI	CACNNNNGTG	1 cut(s)	518
PagI	TCATGA	1 cut(s)	892
PciI	ACATGT	1 cut(s)	929
PfeI	GAWTC	4 cut(s)	5, 353, 699, 907
PkrI	GCNGC	2 cut(s)	55, 525
PleI	GAGTC	2 cut(s)	11, 967
PpsI	GAGTC	2 cut(s)	11, 967
PscI	ACATGT	1 cut(s)	929
Psp6I	CCWGG	1 cut(s)	1041
PspGI	CCWGG	1 cut(s)	1041
PspN4I	GGNNCC	3 cut(s)	109, 878, 1040
PspPI	GGNCC	1 cut(s)	676
PsrI	GAACNNNNNNTAC	2 cut(s)	860, 892
RsaI	GTAC	4 cut(s)	44, 71, 785, 1028
RsaNI	GTAC	4 cut(s)	43, 70, 784, 1027
RseI	CAYNNNNRTG	2 cut(s)	516, 518
SaqAI	TTAA	2 cut(s)	102, 569
SatI	GCNGC	2 cut(s)	54, 524
Sau3AI	GATC	5 cut(s)	385, 452, 832, 889, 1000
Sau96I	GGNCC	1 cut(s)	676
SchI	GAGTC	2 cut(s)	11, 968
ScrFI	CCNGG	2 cut(s)	680, 1043
SduI	GDGCHC	3 cut(s)	99, 110, 886
SfaNI	GCATC	3 cut(s)	330, 589, 923
SinI	GGWCC	1 cut(s)	676
SmiMI	CAYNNNNRTG	2 cut(s)	516, 518
SmlI	CTYRAG	4 cut(s)	373, 694, 779, 980
SmoI	CTYRAG	4 cut(s)	373, 694, 779, 980
Sse9I	AATT	7 cut(s)	531, 544, 621, 630, 670, 703, 760
SsiI	CCGC	1 cut(s)	746
SspMI	CTAG	2 cut(s)	803, 887
StyD4I	CCNGG	2 cut(s)	678, 1041
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	3 cut(s)	641, 819, 867
TaiI	ACGT	2 cut(s)	393, 1061
TaqI	TCGA	1 cut(s)	93
TasI	AATT	7 cut(s)	531, 544, 621, 630, 670, 703, 760
TatI	WGTACW	2 cut(s)	69, 1026
TfiI	GAWTC	4 cut(s)	5, 353, 699, 907
Tru1I	TTAA	2 cut(s)	102, 569
Tru9I	TTAA	2 cut(s)	102, 569
TscAI	CASTG	6 cut(s)	180, 196, 235, 462, 646, 999
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	2 cut(s)	53, 523
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	7 cut(s)	113, 148, 396, 504, 570, 767, 1023
TspGWI	ACGGA	1 cut(s)	869
TspRI	CASTG	6 cut(s)	180, 196, 235, 462, 646, 999
VneI	GTGCAC	1 cut(s)	882
VpaK11BI	GGWCC	1 cut(s)	676
XapI	RAATTY	3 cut(s)	621, 630, 760
XceI	RCATGY	2 cut(s)	60, 933
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658
XspI	CTAG	2 cut(s)	803, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.