Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002308

Physical Location & Seq

Genomic Coordinates Reverse (-)

54753157 .. 54757026

Gene Structure 3870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26173

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGACTCCGAACCCGACTTGCAGAAAACCCCAACAGCCAGGCACAAATGTCCTGCCTGTTACAAGCAATATAAGAAGAAAGAACATCTCATTGAGCACATGAAGGTTGCTTTCCACTCAGCTCATGATCCTAGTTGTGGAGTGTGTAGAAAGCACTGCAAATCTTTTGAGTCATTGAGGGAACATCTTACTGGTCCATTGGCAAAAGCAAATTGCATGAAAATTTTCTCCGAACAAGGGTGTGATTTATGTTTGAAGCTCTTTGATAGCCCTGCTTCTCTTAGCCAGCATAGAGAAATGTGTCTCCTATCTGCACCTGCTCCTATTGGAACAGTGATAATTGCTTGTGCAGAATCTCAATCTTATTTGAACTTGTGTGGTGAAAACCACTTCAATAACCGTGCGGAAGCAATTGCTATGGATTGTGAAATGGTTGGCGGTAGAAGTGATGGATCACTGGACCTGTGTGCAAGGGTGTGCCTGACAGATGAAGACGAGAATATCCTATTCCACACCTATGTGCGGCCTCAAATTTCTATCACGAATTACAGATATGAAATTACTGGGTTAACAGAAGATCATCTTAGAAATGCCATGCCACTCAAAGAAGTGCACGACAAAATCTTGAAAGTTTTGTACAATGGAGAGTCTATTGGGAGATCAAGGTTGGATGGGGAAAAGGCCAAGCTTCTTGTGGGGCATGATTTGGAGCATGATTTGGATTGCATGGGAATGTATTATCCTGAGCACCTGCTGAGGGATACTGCAAAGTACCATCCACTGATGAAAACAAATCTAGTCAGTCACTCACTTAAGTATCTCACCAGAACATATCTGGGGTATGATATCCAGTCTGGTATGCATGATCCCTATGAAGATTGTGTGGCTGTAATGAGACTGTACAAGAGATTTCGAGCCCTAGATCATCAGACAGAAGGCATTGTTGCATCACTTGCTACAACGTATTCAAATGACATCCATGGGAATTTTGATTCTTGGACAACTGAAAAACTTGAGAAGATGACACCTGATGAGCTTTATGAATTGTCAAAACCAAACTACAAGTGCTGGTGTCTGGATAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

362

Amino Acids

41.41

Weight (kDa)

6.28

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	138 - 301	3.3e-12	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100
fragaria_vesca	FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651
malus_domestica	MD14G1090000.v1.1 MD14G1090200.v1.1
prunus_persica	Prupe.1G564900_v2.0.a1 Prupe.1G565600_v2.0.a1 Prupe.8G245200_v2.0.a1
pyrus_communis	pycom14g08070 pycom14g08080
rosa_chinensis	RchiOBHm_Chr6g0291701
rosa_laevigata	RLG00000012097
rosa_multiflora	Rmu_sc0002226.1_g000018
rosa_roxburghii	Rroxscaffold_7G00175840
rosa_rugosa	Rorug06G0220700 Rorug06G0220900
rosa_samantha	Rh6AG333500 Rh6BG340300 Rh6BG340500 Rh6CG346700 Rh6DG333800 Rh6DG333900
rosa_wichuraiana	Rw6G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	325, 759
Acc36I	ACCTGC	2 cut(s)	325, 759
AciI	CCGC	3 cut(s)	404, 438, 523
AclWI	GGATC	3 cut(s)	122, 460, 860
AcsI	RAATTY	3 cut(s)	222, 531, 985
AfaI	GTAC	3 cut(s)	638, 773, 902
AfiI	CCNNNNNNNGG	4 cut(s)	137, 237, 522, 757
AflII	CTTAAG	1 cut(s)	812
AgsI	TTSAA	5 cut(s)	256, 370, 394, 628, 969
AjnI	CCWGG	1 cut(s)	38
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	4 cut(s)	122, 259, 688, 1036
AluI	AGCT	4 cut(s)	122, 259, 688, 1036
Alw21I	GWGCWC	3 cut(s)	99, 615, 750
Alw26I	GTCTC	2 cut(s)	308, 889
Alw44I	GTGCAC	1 cut(s)	611
AlwI	GGATC	3 cut(s)	122, 460, 860
AoxI	GGCC	2 cut(s)	524, 681
ApaLI	GTGCAC	1 cut(s)	611
ApoI	RAATTY	3 cut(s)	222, 531, 985
Asp700I	GAANNNNTTC	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	194, 460
AsuHPI	GGTGA	2 cut(s)	392, 814
AvaII	GGWCC	2 cut(s)	194, 460
BaeGI	GKGCMC	1 cut(s)	615
BaeI	ACNNNNGTAYC	2 cut(s)	800, 833
BanII	GRGCYC	1 cut(s)	919
BbsI	GAAGAC	1 cut(s)	498
Bbv12I	GWGCWC	3 cut(s)	99, 615, 750
BbvCI	CCTCAGC	1 cut(s)	755
BccI	CCATC	3 cut(s)	443, 665, 783
BciT130I	CCWGG	1 cut(s)	40
BciVI	GTATCC	1 cut(s)	754
BcoDI	GTCTC	2 cut(s)	308, 889
BfaI	CTAG	3 cut(s)	132, 797, 920
BfrI	CTTAAG	1 cut(s)	812
BfuAI	ACCTGC	2 cut(s)	325, 759
BfuI	GTATCC	1 cut(s)	754
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	2 cut(s)	194, 460
BmgT120I	GGNCC	2 cut(s)	194, 460
BmrFI	CCNGG	1 cut(s)	40
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	1 cut(s)	956
BmuI	ACTGGG	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	498
Bpu10I	CCTNAGC	2 cut(s)	744, 755
BpuEI	CTTGAG	1 cut(s)	1034
BsaJI	CCNNGG	1 cut(s)	979
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 237, 522, 757
Bse1I	ACTGG	4 cut(s)	196, 462, 568, 850
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	979
BseGI	GGATG	3 cut(s)	676, 775, 975
BseLI	CCNNNNNNNGG	4 cut(s)	137, 237, 522, 757
BseMII	CTCAG	3 cut(s)	132, 735, 746
BseNI	ACTGG	4 cut(s)	196, 462, 568, 850
BseSI	GKGCMC	1 cut(s)	615
BsgI	GTGCAG	2 cut(s)	297, 369
BshFI	GGCC	2 cut(s)	526, 683
BsiHKAI	GWGCWC	3 cut(s)	99, 615, 750
BslI	CCNNNNNNNGG	4 cut(s)	137, 237, 522, 757
BsmAI	GTCTC	2 cut(s)	308, 889
BsnI	GGCC	2 cut(s)	526, 683
Bsp1286I	GDGCHC	4 cut(s)	99, 615, 750, 919
Bsp1407I	TGTACA	2 cut(s)	636, 900
Bsp143I	GATC	6 cut(s)	127, 452, 577, 659, 865, 922
Bsp19I	CCATGG	1 cut(s)	979
BspACI	CCGC	3 cut(s)	404, 438, 523
BspANI	GGCC	2 cut(s)	526, 683
BspCNI	CTCAG	3 cut(s)	131, 736, 747
BspHI	TCATGA	1 cut(s)	124
BspMI	ACCTGC	2 cut(s)	325, 759
BspPI	GGATC	3 cut(s)	122, 460, 860
BspTI	CTTAAG	1 cut(s)	812
BsrGI	TGTACA	2 cut(s)	636, 900
BsrI	ACTGG	4 cut(s)	196, 462, 568, 850
BssECI	CCNNGG	1 cut(s)	979
BssMI	GATC	6 cut(s)	127, 452, 577, 659, 865, 922
BssT1I	CCWWGG	1 cut(s)	979
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	3 cut(s)	334, 401, 900
BstAFI	CTTAAG	1 cut(s)	812
BstAPI	GCANNNNNTGC	1 cut(s)	953
BstAUI	TGTACA	2 cut(s)	636, 900
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	5 cut(s)	118, 281, 584, 744, 755
BstDSI	CCRYGG	1 cut(s)	979
BstF5I	GGATG	3 cut(s)	676, 775, 975
BstKTI	GATC	6 cut(s)	130, 455, 580, 662, 868, 925
BstMAI	GTCTC	2 cut(s)	308, 889
BstMBI	GATC	6 cut(s)	127, 452, 577, 659, 865, 922
BstMWI	GCNNNNNNNGC	1 cut(s)	953
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstSLI	GKGCMC	1 cut(s)	615
BstV2I	GAAGAC	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	754
BsuRI	GGCC	2 cut(s)	526, 683
BtgI	CCRYGG	1 cut(s)	979
BtsCI	GGATG	3 cut(s)	676, 775, 975
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	4 cut(s)	154, 339, 455, 779
BveI	ACCTGC	2 cut(s)	325, 759
Cac8I	GCNNGC	1 cut(s)	287
CciI	TCATGA	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	194, 460
Csp6I	GTAC	3 cut(s)	637, 772, 901
CviAII	CATG	9 cut(s)	100, 125, 217, 595, 701, 713, 727, 863, 980
CviQI	GTAC	3 cut(s)	637, 772, 901
DdeI	CTNAG	5 cut(s)	118, 281, 584, 744, 755
DpnI	GATC	6 cut(s)	129, 454, 579, 661, 867, 924
DpnII	GATC	6 cut(s)	127, 452, 577, 659, 865, 922
Eco130I	CCWWGG	1 cut(s)	979
Eco24I	GRGCYC	1 cut(s)	919
Eco32I	GATATC	1 cut(s)	847
Eco47I	GGWCC	2 cut(s)	194, 460
EcoRII	CCWGG	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	1 cut(s)	979
EcoT22I	ATGCAT	1 cut(s)	864
EcoT38I	GRGCYC	1 cut(s)	919
ErhI	CCWWGG	1 cut(s)	979
FaeI	CATG	9 cut(s)	103, 128, 220, 598, 704, 716, 730, 866, 983
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FatI	CATG	9 cut(s)	99, 124, 216, 594, 700, 712, 726, 862, 979
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	3 cut(s)	683, 762, 962
FriOI	GRGCYC	1 cut(s)	919
Fsp4HI	GCNGC	1 cut(s)	524
FspBI	CTAG	3 cut(s)	132, 797, 920
GluI	GCNGC	1 cut(s)	524
HaeIII	GGCC	2 cut(s)	526, 683
Hin1II	CATG	9 cut(s)	103, 128, 220, 598, 704, 716, 730, 866, 983
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	5 cut(s)	5, 170, 353, 647, 992
HpaI	GTTAAC	1 cut(s)	570
HphI	GGTGA	2 cut(s)	392, 814
Hpy166II	GTNNAC	2 cut(s)	570, 613
Hpy188I	TCNGA	3 cut(s)	10, 232, 930
Hpy188III	TCNNGA	5 cut(s)	125, 541, 625, 743, 1076
Hpy8I	GTNNAC	2 cut(s)	570, 613
HpyAV	CCTTC	3 cut(s)	97, 929, 1077
HpyCH4III	ACNGT	3 cut(s)	334, 401, 900
HpyCH4IV	ACGT	1 cut(s)	962
HpyF10VI	GCNNNNNNNGC	1 cut(s)	953
HpyF3I	CTNAG	5 cut(s)	118, 281, 584, 744, 755
HpySE526I	ACGT	1 cut(s)	962
Hsp92II	CATG	9 cut(s)	103, 128, 220, 598, 704, 716, 730, 866, 983
KspAI	GTTAAC	1 cut(s)	570
Kzo9I	GATC	6 cut(s)	127, 452, 577, 659, 865, 922
LmnI	GCTCC	2 cut(s)	325, 709
LweI	GCATC	1 cut(s)	956
MaeI	CTAG	3 cut(s)	132, 797, 920
MaeII	ACGT	1 cut(s)	962
MaeIII	GTNAC	2 cut(s)	59, 803
MalI	GATC	6 cut(s)	129, 454, 579, 661, 867, 924
MboI	GATC	6 cut(s)	127, 452, 577, 659, 865, 922
MboII	GAAGA	5 cut(s)	88, 503, 587, 887, 1030
MfeI	CAATTG	1 cut(s)	411
MhlI	GDGCHC	4 cut(s)	99, 615, 750, 919
MluCI	AATT	9 cut(s)	211, 222, 339, 411, 531, 544, 558, 985, 1043
MlyI	GAGTC	2 cut(s)	179, 656
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	3 cut(s)	171, 537, 750
Mph1103I	ATGCAT	1 cut(s)	864
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	2 cut(s)	569, 813
MslI	CAYNNNNRTG	3 cut(s)	516, 518, 731
MspCI	CTTAAG	1 cut(s)	812
MspR9I	CCNGG	1 cut(s)	40
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	953
NcoI	CCATGG	1 cut(s)	979
NdeII	GATC	6 cut(s)	127, 452, 577, 659, 865, 922
NlaIII	CATG	9 cut(s)	103, 128, 220, 598, 704, 716, 730, 866, 983
NmuCI	GTSAC	1 cut(s)	803
NsiI	ATGCAT	1 cut(s)	864
OliI	CACNNNNGTG	1 cut(s)	518
PagI	TCATGA	1 cut(s)	124
PaqCI	CACCTGC	2 cut(s)	325, 759
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	353, 992
PkrI	GCNGC	1 cut(s)	525
PleI	GAGTC	2 cut(s)	178, 655
PpsI	GAGTC	2 cut(s)	178, 655
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspPI	GGNCC	2 cut(s)	194, 460
RsaI	GTAC	3 cut(s)	638, 773, 902
RsaNI	GTAC	3 cut(s)	637, 772, 901
RseI	CAYNNNNRTG	3 cut(s)	516, 518, 731
SaqAI	TTAA	2 cut(s)	569, 813
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	6 cut(s)	127, 452, 577, 659, 865, 922
Sau96I	GGNCC	2 cut(s)	194, 460
SchI	GAGTC	2 cut(s)	179, 656
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	4 cut(s)	99, 615, 750, 919
SfaNI	GCATC	1 cut(s)	956
SinI	GGWCC	2 cut(s)	194, 460
SmiMI	CAYNNNNRTG	3 cut(s)	516, 518, 731
SmlI	CTYRAG	2 cut(s)	812, 1013
SmoI	CTYRAG	2 cut(s)	812, 1013
Sse9I	AATT	9 cut(s)	211, 222, 339, 411, 531, 544, 558, 985, 1043
SsiI	CCGC	3 cut(s)	404, 438, 523
SspMI	CTAG	3 cut(s)	132, 797, 920
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	979
TaaI	ACNGT	3 cut(s)	334, 401, 900
TaiI	ACGT	1 cut(s)	965
TaqI	TCGA	1 cut(s)	913
TasI	AATT	9 cut(s)	211, 222, 339, 411, 531, 544, 558, 985, 1043
TatI	WGTACW	2 cut(s)	636, 900
TauI	GCSGC	1 cut(s)	526
TfiI	GAWTC	2 cut(s)	353, 992
Tru1I	TTAA	2 cut(s)	569, 813
Tru9I	TTAA	2 cut(s)	569, 813
TscAI	CASTG	4 cut(s)	161, 339, 462, 786
TseFI	GTSAC	1 cut(s)	803
Tsp45I	GTSAC	1 cut(s)	803
TspDTI	ATGAA	7 cut(s)	116, 233, 504, 570, 800, 888, 1056
TspRI	CASTG	4 cut(s)	161, 339, 462, 786
Vha464I	CTTAAG	1 cut(s)	812
VneI	GTGCAC	1 cut(s)	611
VpaK11BI	GGWCC	2 cut(s)	194, 460
XapI	RAATTY	3 cut(s)	222, 531, 985
XcmI	CCANNNNNNNNNTGG	2 cut(s)	691, 832
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	3 cut(s)	132, 797, 920
Zsp2I	ATGCAT	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.