Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002308

Physical Location & Seq

Genomic Coordinates Reverse (-)

8492822 .. 8494402

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g08070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAAGATCATGTTGGAGCGGGTCTTGAAGCAGTTGCTCTGGATTGTGAATTGGTTTAGGGTGGAAGTGATGTATCACTGGACCTATGTGCAAGAGTGCCTGATTGATGAAGATGAGAATATCAACTTCCACACTTATGTGCAGCCCCAAGTTGTTGTCACTAATTACAGGTTGCCTTATTTATCTGCGAAATTGGTGGTATTGCTGTTTCTTAAGACTTTTGCATTTATGGTTGGACACTGTAAACTACAATTTGGTCAGCCACTCACTCAAGTACCCCACACAAAGGACTTGAAGTCAGGTTCACATGATCTATATGTAGAGTGTGTGTCAGTGATGAGACTGTACAAAAGATTCCATGCACTAGATCATGCTAGAAAAGGGAATCGGGCATCAGTTGCGACGACATGTGCAAAAGACGTTCTGGAAAGTTTTGAGTCATTGAAAACCACCAAACTTGAGGAGATGGCAGTGAATGATCTTTATGAAATATCAACGCCAAAGTACAGGTATGGTGAAGTGAATGAGGACACTGTTGCTAAGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

184

Amino Acids

21.5

Weight (kDa)

8.27

Isoelectric Point (pI)

24.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100
fragaria_vesca	FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651
malus_domestica	MD14G1090000.v1.1 MD14G1090200.v1.1
prunus_persica	Prupe.1G564900_v2.0.a1 Prupe.1G565600_v2.0.a1 Prupe.8G245200_v2.0.a1
pyrus_communis	pycom14g08070 pycom14g08080
rosa_chinensis	RchiOBHm_Chr6g0291701
rosa_laevigata	RLG00000012097
rosa_multiflora	Rmu_sc0002226.1_g000018
rosa_roxburghii	Rroxscaffold_7G00175840
rosa_rugosa	Rorug06G0220700 Rorug06G0220900
rosa_samantha	Rh6AG333500 Rh6BG340300 Rh6BG340500 Rh6CG346700 Rh6DG333800 Rh6DG333900
rosa_wichuraiana	Rw6G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	19
AciI	CCGC	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	545
AfaI	GTAC	3 cut(s)	276, 347, 506
AfiI	CCNNNNNNNGG	1 cut(s)	286
AflII	CTTAAG	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	28, 295, 445
AhdI	GACNNNNNGTC	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	81
BaeI	ACNNNNGTAYC	2 cut(s)	258, 291
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	2 cut(s)	365, 375
BfrI	CTTAAG	1 cut(s)	212
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	81
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	81
BmsI	GCATC	1 cut(s)	401
BpuEI	CTTGAG	2 cut(s)	255, 479
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	334
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	6, 310, 367, 478
BspACI	CCGC	1 cut(s)	19
BspTI	CTTAAG	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	83
BssMI	GATC	4 cut(s)	6, 310, 367, 478
Bst4CI	ACNGT	3 cut(s)	242, 345, 535
BstAFI	CTTAAG	1 cut(s)	212
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	540
BstKTI	GATC	4 cut(s)	9, 313, 370, 481
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	4 cut(s)	6, 310, 367, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNSI	RCATGY	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	5 cut(s)	76, 238, 339, 477, 531
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	3 cut(s)	275, 346, 505
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CviAII	CATG	5 cut(s)	10, 308, 359, 371, 408
CviJI	RGCY	2 cut(s)	145, 262
CviKI_1	RGCY	2 cut(s)	145, 262
CviQI	GTAC	3 cut(s)	275, 346, 505
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	4 cut(s)	8, 312, 369, 480
DpnII	GATC	4 cut(s)	6, 310, 367, 478
DriI	GACNNNNNGTC	1 cut(s)	295
Eam1105I	GACNNNNNGTC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	81
FaeI	CATG	5 cut(s)	13, 311, 362, 374, 411
FatI	CATG	5 cut(s)	9, 307, 358, 370, 407
FauI	CCCGC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	2 cut(s)	365, 375
GluI	GCNGC	1 cut(s)	143
Hin1II	CATG	5 cut(s)	13, 311, 362, 374, 411
HinfI	GANTC	3 cut(s)	354, 385, 437
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	2 cut(s)	245, 305
Hpy188III	TCNNGA	3 cut(s)	25, 40, 425
Hpy8I	GTNNAC	2 cut(s)	245, 305
Hpy99I	CGWCG	1 cut(s)	406
HpyCH4III	ACNGT	3 cut(s)	242, 345, 535
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	5 cut(s)	91, 142, 224, 362, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	5 cut(s)	13, 311, 362, 374, 411
Kzo9I	GATC	4 cut(s)	6, 310, 367, 478
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	7 cut(s)	25, 64, 113, 154, 285, 410, 493
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	2 cut(s)	365, 375
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	4 cut(s)	8, 312, 369, 480
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	4 cut(s)	6, 310, 367, 478
MboII	GAAGA	2 cut(s)	16, 122
MluCI	AATT	5 cut(s)	49, 163, 191, 251, 545
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	2 cut(s)	454, 520
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	2 cut(s)	135, 137
MspCI	CTTAAG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	4 cut(s)	6, 310, 367, 478
NlaIII	CATG	5 cut(s)	13, 311, 362, 374, 411
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	411
OliI	CACNNNNGTG	1 cut(s)	137
PciI	ACATGT	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	354, 385
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PscI	ACATGT	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	81
RsaI	GTAC	3 cut(s)	276, 347, 506
RsaNI	GTAC	3 cut(s)	275, 346, 505
RseI	CAYNNNNRTG	2 cut(s)	135, 137
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	4 cut(s)	6, 310, 367, 478
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	446
SetI	ASST	5 cut(s)	86, 173, 304, 423, 512
SfaNI	GCATC	1 cut(s)	401
SinI	GGWCC	1 cut(s)	81
SmiMI	CAYNNNNRTG	2 cut(s)	135, 137
SmlI	CTYRAG	3 cut(s)	212, 270, 458
SmoI	CTYRAG	3 cut(s)	212, 270, 458
Sse9I	AATT	5 cut(s)	49, 163, 191, 251, 545
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	2 cut(s)	365, 375
TaaI	ACNGT	3 cut(s)	242, 345, 535
TaiI	ACGT	1 cut(s)	423
TasI	AATT	5 cut(s)	49, 163, 191, 251, 545
TatI	WGTACW	2 cut(s)	345, 504
TfiI	GAWTC	2 cut(s)	354, 385
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	5 cut(s)	83, 245, 339, 477, 538
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	3 cut(s)	17, 123, 501
TspRI	CASTG	5 cut(s)	83, 245, 339, 477, 538
Vha464I	CTTAAG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	81
XapI	RAATTY	1 cut(s)	545
XceI	RCATGY	1 cut(s)	411
XspI	CTAG	2 cut(s)	365, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.