Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002308

Physical Location & Seq

Genomic Coordinates Forward (+)

46170067 .. 46172936

Gene Structure 2870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G565600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGACGGACGGAAGGGAAAATATGAAGTTGAGGTTCCACCCCAAAACCAATTGGCAATCACAACTCCTTATAAGAAATGTGCTGCATGCTACAAGCTGTATAAGAAAAAAGAACATCTTTTCGAGCACATTAATGTCTCTTTCCATTCAGTTCATCAGCCTAGATGTGGAGTGGAGCATATCACTAGACCACTGGCAAAAGAAGATTGCAAGAGGGTTTTCTCTGAACAAGGTTGTGATCTATGTTTGAAGCTTTTTGATAGTCCTAGTTCTCTGAGCTCGCATAAATATATGCGTCGCCTATCTGCGCCTGTTTCTCTGGGAACAACGATGGAGCCATGTGAAGAATTTAAATATGATATAAACTCCAGCAAGGAAAATCACATTGGAGATGGTACGGAAGCAATTGCTCTGGATTGTGAAATGGTTGCTGGTGGAAGTGATGGATCACTACCTACTATCCTCTTCCACACTTATGTGCAGCCCCAAGATCATGTCATTCATTACAGTTTGCAAATTTTGTATAATGGAAAGACCAAGATTCTTTTGGGACATAGTTTAGAGAATGATTTGGATTGCTTGAGAATAAACTGTCCTGATTACCTGCTTAGGGATACTGCAAGCTACCATCCAGTGATGAAAACAGATCTGGTTAGCCACCCGCTCAAGCACCTGACCAGAACATATCCAGGGTATGATATCCAGTCAGGTTTTCATGATCCATATGAAGATTGTGTGTCGGCTATGAGACTGTACGAAAGGTTCCATGGGCTAGATCAACAGAAGGAAGGCAATGCGGCATCACTTGCTACTATGCGTGCAAAAGACATCCCCGGAAGTTTTGATTCATGGGAAACCAACAAGCAATGCAACCTCATCATTGGATTCTCACTTCAAGTTAATTTTTTACAATTTTCATTCACATACCGCAGGATTGACAGAAACATCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

318

Amino Acids

36.18

Weight (kDa)

6.59

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100
fragaria_vesca	FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651
malus_domestica	MD14G1090000.v1.1 MD14G1090200.v1.1
prunus_persica	Prupe.1G564900_v2.0.a1 Prupe.1G565600_v2.0.a1 Prupe.8G245200_v2.0.a1
pyrus_communis	pycom14g08070 pycom14g08080
rosa_chinensis	RchiOBHm_Chr6g0291701
rosa_laevigata	RLG00000012097
rosa_multiflora	Rmu_sc0002226.1_g000018
rosa_roxburghii	Rroxscaffold_7G00175840
rosa_rugosa	Rorug06G0220700 Rorug06G0220900
rosa_samantha	Rh6AG333500 Rh6BG340300 Rh6BG340500 Rh6CG346700 Rh6DG333800 Rh6DG333900
rosa_wichuraiana	Rw6G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	612
AccBSI	CCGCTC	1 cut(s)	664
AciI	CCGC	3 cut(s)	662, 797, 928
AclWI	GGATC	2 cut(s)	454, 713
AcsI	RAATTY	2 cut(s)	347, 516
AfaI	GTAC	2 cut(s)	397, 755
AfiI	CCNNNNNNNGG	2 cut(s)	167, 610
AgsI	TTSAA	2 cut(s)	250, 896
AjnI	CCWGG	1 cut(s)	688
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AleI	CACNNNNGTG	1 cut(s)	476
AluBI	AGCT	4 cut(s)	97, 253, 279, 624
AluI	AGCT	4 cut(s)	97, 253, 279, 624
Alw21I	GWGCWC	2 cut(s)	129, 281
Alw26I	GTCTC	2 cut(s)	142, 742
AlwI	GGATC	2 cut(s)	454, 713
ApeKI	GCWGC	2 cut(s)	83, 481
ApoI	RAATTY	2 cut(s)	347, 516
AseI	ATTAAT	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	310
AsuC2I	CCSGG	1 cut(s)	834
BanII	GRGCYC	1 cut(s)	281
Bbv12I	GWGCWC	2 cut(s)	129, 281
BbvI	GCAGC	2 cut(s)	70, 493
BccI	CCATC	4 cut(s)	325, 386, 437, 636
BciT130I	CCWGG	1 cut(s)	690
BciVI	GTATCC	1 cut(s)	607
BcnI	CCSGG	1 cut(s)	834
BcoDI	GTCTC	2 cut(s)	142, 742
BfaI	CTAG	4 cut(s)	162, 186, 267, 773
BfuAI	ACCTGC	1 cut(s)	612
BfuI	GTATCC	1 cut(s)	607
BglII	AGATCT	1 cut(s)	646
BisI	GCNGC	3 cut(s)	84, 482, 798
BlsI	GCNGC	3 cut(s)	85, 483, 799
Bme1390I	CCNGG	2 cut(s)	690, 834
BmiI	GGNNCC	3 cut(s)	36, 336, 764
BmrFI	CCNGG	2 cut(s)	690, 834
BmsI	GCATC	1 cut(s)	809
BpmI	CTGGAG	1 cut(s)	352
Bpu10I	CCTNAGC	1 cut(s)	608
BpuEI	CTTGAG	2 cut(s)	601, 650
BpuMI	CCSGG	1 cut(s)	834
BsaJI	CCNNGG	3 cut(s)	689, 766, 832
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 610
Bse1I	ACTGG	3 cut(s)	198, 632, 703
Bse3DI	GCAATG	2 cut(s)	799, 872
BseBI	CCWGG	1 cut(s)	690
BseDI	CCNNGG	3 cut(s)	689, 766, 832
BseGI	GGATG	2 cut(s)	628, 828
BseLI	CCNNNNNNNGG	2 cut(s)	167, 610
BseMI	GCAATG	2 cut(s)	799, 872
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	3 cut(s)	198, 632, 703
BseXI	GCAGC	2 cut(s)	70, 493
BsgI	GTGCAG	1 cut(s)	500
BsiHKAI	GWGCWC	2 cut(s)	129, 281
BsiSI	CCGG	1 cut(s)	834
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	2 cut(s)	167, 610
BsmAI	GTCTC	2 cut(s)	142, 742
BsmFI	GGGAC	1 cut(s)	564
Bsp1286I	GDGCHC	2 cut(s)	129, 281
Bsp143I	GATC	6 cut(s)	238, 446, 490, 646, 718, 775
Bsp19I	CCATGG	1 cut(s)	766
BspACI	CCGC	3 cut(s)	662, 797, 928
BspCNI	CTCAG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	3 cut(s)	36, 336, 764
BspMI	ACCTGC	1 cut(s)	612
BspPI	GGATC	2 cut(s)	454, 713
BsrBI	CCGCTC	1 cut(s)	664
BsrDI	GCAATG	2 cut(s)	799, 872
BsrI	ACTGG	3 cut(s)	198, 632, 703
BssECI	CCNNGG	3 cut(s)	689, 766, 832
BssMI	GATC	6 cut(s)	238, 446, 490, 646, 718, 775
BssT1I	CCWWGG	1 cut(s)	766
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	3 cut(s)	509, 593, 753
Bst6I	CTCTTC	1 cut(s)	470
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstC8I	GCNNGC	4 cut(s)	88, 281, 622, 819
BstDEI	CTNAG	2 cut(s)	275, 608
BstDSI	CCRYGG	1 cut(s)	766
BstF5I	GGATG	2 cut(s)	628, 828
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	6 cut(s)	241, 449, 493, 649, 721, 778
BstMAI	GTCTC	2 cut(s)	142, 742
BstMBI	GATC	6 cut(s)	238, 446, 490, 646, 718, 775
BstMWI	GCNNNNNNNGC	1 cut(s)	806
BstNI	CCWGG	1 cut(s)	690
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	688, 832
BstV1I	GCAGC	2 cut(s)	70, 493
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
BsuI	GTATCC	1 cut(s)	607
BtgI	CCRYGG	1 cut(s)	766
BtsCI	GGATG	2 cut(s)	628, 828
BtsIMutI	CAGTG	2 cut(s)	191, 639
BveI	ACCTGC	1 cut(s)	612
Cac8I	GCNNGC	4 cut(s)	88, 281, 622, 819
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	1 cut(s)	310
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	396, 754
CviAII	CATG	7 cut(s)	87, 339, 494, 716, 767, 849, 951
CviQI	GTAC	2 cut(s)	396, 754
DdeI	CTNAG	2 cut(s)	275, 608
DpnI	GATC	6 cut(s)	240, 448, 492, 648, 720, 777
DpnII	GATC	6 cut(s)	238, 446, 490, 646, 718, 775
DraI	TTTAAA	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Ecl136II	GAGCTC	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	766
Eco24I	GRGCYC	1 cut(s)	281
Eco32I	GATATC	1 cut(s)	700
Eco53kI	GAGCTC	1 cut(s)	279
EcoICRI	GAGCTC	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	688
EcoRV	GATATC	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	766
EcoT38I	GRGCYC	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	766
FaeI	CATG	7 cut(s)	90, 342, 497, 719, 770, 852, 954
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	7 cut(s)	86, 338, 493, 715, 766, 848, 950
FauI	CCCGC	1 cut(s)	669
FauNDI	CATATG	1 cut(s)	724
Fnu4HI	GCNGC	3 cut(s)	84, 482, 798
FokI	GGATG	2 cut(s)	615, 815
FriOI	GRGCYC	1 cut(s)	281
Fsp4HI	GCNGC	3 cut(s)	84, 482, 798
FspBI	CTAG	4 cut(s)	162, 186, 267, 773
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	3 cut(s)	84, 482, 798
GsuI	CTGGAG	1 cut(s)	352
HapII	CCGG	1 cut(s)	834
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	7 cut(s)	90, 342, 497, 719, 770, 852, 954
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	3 cut(s)	541, 845, 885
HpaII	CCGG	1 cut(s)	834
Hpy188I	TCNGA	2 cut(s)	226, 276
Hpy188III	TCNNGA	3 cut(s)	413, 596, 716
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	3 cut(s)	7, 778, 782
HpyCH4III	ACNGT	3 cut(s)	509, 593, 753
HpyCH4V	TGCA	7 cut(s)	86, 210, 481, 514, 620, 821, 870
HpyF10VI	GCNNNNNNNGC	1 cut(s)	806
HpyF3I	CTNAG	2 cut(s)	275, 608
Hsp92II	CATG	7 cut(s)	90, 342, 497, 719, 770, 852, 954
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	6 cut(s)	238, 446, 490, 646, 718, 775
LmnI	GCTCC	2 cut(s)	175, 334
Lsp1109I	GCAGC	2 cut(s)	70, 493
LweI	GCATC	1 cut(s)	809
MaeI	CTAG	4 cut(s)	162, 186, 267, 773
MalI	GATC	6 cut(s)	240, 448, 492, 648, 720, 777
MbiI	CCGCTC	1 cut(s)	664
MboI	GATC	6 cut(s)	238, 446, 490, 646, 718, 775
MboII	GAAGA	4 cut(s)	215, 356, 457, 740
MfeI	CAATTG	2 cut(s)	50, 405
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	2 cut(s)	129, 281
MluCI	AATT	6 cut(s)	50, 347, 405, 516, 901, 911
MnlI	CCTC	4 cut(s)	25, 207, 473, 884
MseI	TTAA	3 cut(s)	132, 351, 900
MslI	CAYNNNNRTG	3 cut(s)	132, 474, 476
MspI	CCGG	1 cut(s)	834
MspR9I	CCNGG	2 cut(s)	690, 834
MunI	CAATTG	2 cut(s)	50, 405
MvaI	CCWGG	1 cut(s)	690
MwoI	GCNNNNNNNGC	1 cut(s)	806
NciI	CCSGG	1 cut(s)	834
NcoI	CCATGG	1 cut(s)	766
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	6 cut(s)	238, 446, 490, 646, 718, 775
NlaIII	CATG	7 cut(s)	90, 342, 497, 719, 770, 852, 954
NlaIV	GGNNCC	3 cut(s)	36, 336, 764
NspI	RCATGY	1 cut(s)	90
OliI	CACNNNNGTG	1 cut(s)	476
PaeI	GCATGC	1 cut(s)	90
PagI	TCATGA	1 cut(s)	715
PfeI	GAWTC	3 cut(s)	541, 845, 885
PkrI	GCNGC	3 cut(s)	85, 483, 799
PshBI	ATTAAT	1 cut(s)	132
PsiI	TTATAA	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	3 cut(s)	36, 336, 764
PsrI	GAACNNNNNNTAC	2 cut(s)	746, 778
PsuI	RGATCY	1 cut(s)	646
RsaI	GTAC	2 cut(s)	397, 755
RsaNI	GTAC	2 cut(s)	396, 754
RseI	CAYNNNNRTG	3 cut(s)	132, 474, 476
SacI	GAGCTC	1 cut(s)	281
SaqAI	TTAA	3 cut(s)	132, 351, 900
SatI	GCNGC	3 cut(s)	84, 482, 798
Sau3AI	GATC	6 cut(s)	238, 446, 490, 646, 718, 775
ScrFI	CCNGG	2 cut(s)	690, 834
SduI	GDGCHC	2 cut(s)	129, 281
SfaNI	GCATC	1 cut(s)	809
SmiI	ATTTAAAT	1 cut(s)	352
SmiMI	CAYNNNNRTG	3 cut(s)	132, 474, 476
SmlI	CTYRAG	2 cut(s)	580, 665
SmoI	CTYRAG	2 cut(s)	580, 665
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	6 cut(s)	50, 347, 405, 516, 901, 911
SsiI	CCGC	3 cut(s)	662, 797, 928
SspMI	CTAG	4 cut(s)	162, 186, 267, 773
SstI	GAGCTC	1 cut(s)	281
StyD4I	CCNGG	2 cut(s)	688, 832
StyI	CCWWGG	1 cut(s)	766
SwaI	ATTTAAAT	1 cut(s)	352
TaaI	ACNGT	3 cut(s)	509, 593, 753
TaqI	TCGA	1 cut(s)	123
TasI	AATT	6 cut(s)	50, 347, 405, 516, 901, 911
TauI	GCSGC	1 cut(s)	800
TfiI	GAWTC	3 cut(s)	541, 845, 885
Tru1I	TTAA	3 cut(s)	132, 351, 900
Tru9I	TTAA	3 cut(s)	132, 351, 900
TscAI	CASTG	2 cut(s)	198, 639
TseI	GCWGC	2 cut(s)	83, 481
TspDTI	ATGAA	8 cut(s)	39, 143, 491, 653, 704, 741, 837, 906
TspGWI	ACGGA	3 cut(s)	21, 25, 413
TspRI	CASTG	2 cut(s)	198, 639
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	2 cut(s)	347, 516
XceI	RCATGY	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XspI	CTAG	4 cut(s)	162, 186, 267, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.