Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002308

Physical Location & Seq

Genomic Coordinates Reverse (-)

21318904 .. 21322386

Gene Structure 3483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G245200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGACTTCGAACCAGAACTTCCAAAAACCACAAACACAAGGTACAAATGTGCTGCATGCTACAAGCAGTATAAGAAAAAGGAACATCTAGTCGATCACATTAATGTCTCGTTCCATTCAGTTCATCAGCCTAGATGTGGAGTGTGTAAAAAGCACTTCAAATCTTTTGAATCACAGAGGGAGCATGTCACCGGACCACTGGCAAAAGAAAATTGCAAGACGGTTTTCTCTGAACAAGGTTGTGATCTATGTTTGAAGATTTTTGATAGCCCTAATTCTCTGAGCGCTCATAAATATATGTGTCGCCTATCTGCACCTGTTCCTCTGGTAACAATGATGGAGCGATGTGAAGAATTTAAACATGATATAAACTCCAGCAACGAATATCACGTTGGAGATGGTACGGAAGCAATTGCTCTGGATTGTGAAATGGTTGCTGGTGGAAGTGATGGATCACTGGACCTGTGTGCAAGGGTGTGCCTGATTGATGAAGACGAGACTATCCTCTTCCACACTTATGTGCAGCCCCAATATCCTGTCGTTAATTACAGATATGAAGTTACTGGGTTAACAGAAGAGCATCTCAGAGATGGCATGCCACTCCAAAAAGTGCAAGATAAGGTTTTGCAAATTTTGTATAATGGAAAGACCAAGCTTCTTGTGGGGCATAGTGTAGAGAATGATTTGGATTGCTTGAGAATGAACTATCCTGATTACCTGCTGAGGGATACTGCAAACTACCATCCTCTGATGAAGACAAATCTGGTTAGCCACCCGCTCAAGTACCTCACCAGAACATATCTAGGGTATGATATCCAGTCAGGTTTTCATGATCCATATGAAGATTGTGTGTCTGCTATGAGACTCTACAAAAGGTTCTGTGCGCTAGATCATCAGAAAGAAGGCAATGTGGCTTCACTTGCTATGCTGTGTGCAAAAGACATCCCTGGAAGTTTTGATTCTTGGGAAACCGACAAACTTGAGAAGATGACACTCGATGAGCTTTATGAAATGTCGAGACCAAACTACAAATGTTGGTGCCTGGATTCAGTGCAAGCAATGCAACCTCAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

359

Amino Acids

41.22

Weight (kDa)

5.85

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100
fragaria_vesca	FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651
malus_domestica	MD14G1090000.v1.1 MD14G1090200.v1.1
prunus_persica	Prupe.1G564900_v2.0.a1 Prupe.1G565600_v2.0.a1 Prupe.8G245200_v2.0.a1
pyrus_communis	pycom14g08070 pycom14g08080
rosa_chinensis	RchiOBHm_Chr6g0291701
rosa_laevigata	RLG00000012097
rosa_multiflora	Rmu_sc0002226.1_g000018
rosa_roxburghii	Rroxscaffold_7G00175840
rosa_rugosa	Rorug06G0220700 Rorug06G0220900
rosa_samantha	Rh6AG333500 Rh6BG340300 Rh6BG340500 Rh6CG346700 Rh6DG333800 Rh6DG333900
rosa_wichuraiana	Rw6G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	726
AccB1I	GGYRCC	1 cut(s)	1038
AccBSI	CCGCTC	1 cut(s)	778
AciI	CCGC	1 cut(s)	776
AclWI	GGATC	2 cut(s)	460, 827
AcsI	RAATTY	2 cut(s)	353, 630
AfaI	GTAC	3 cut(s)	44, 403, 785
AfeI	AGCGCT	1 cut(s)	286
AfiI	CCNNNNNNNGG	2 cut(s)	137, 724
AgsI	TTSAA	3 cut(s)	160, 170, 256
AjnI	CCWGG	2 cut(s)	946, 1041
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	2 cut(s)	655, 1003
AluI	AGCT	2 cut(s)	655, 1003
Alw26I	GTCTC	4 cut(s)	112, 491, 856, 1012
AlwI	GGATC	2 cut(s)	460, 827
Aor51HI	AGCGCT	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	53, 523
ApoI	RAATTY	2 cut(s)	353, 630
AseI	ATTAAT	1 cut(s)	102
AspLEI	GCGC	2 cut(s)	287, 886
AspS9I	GGNCC	2 cut(s)	194, 460
AsuHPI	GGTGA	2 cut(s)	181, 781
AsuII	TTCGAA	1 cut(s)	9
AvaII	GGWCC	2 cut(s)	194, 460
BaeI	ACNNNNGTAYC	2 cut(s)	34, 67
BanI	GGYRCC	1 cut(s)	1038
BbsI	GAAGAC	2 cut(s)	498, 761
BbvCI	CCTCAGC	2 cut(s)	722, 1068
BbvI	GCAGC	2 cut(s)	40, 535
BccI	CCATC	5 cut(s)	331, 392, 443, 584, 750
BciT130I	CCWGG	2 cut(s)	948, 1043
BciVI	GTATCC	1 cut(s)	721
BcoDI	GTCTC	4 cut(s)	112, 491, 856, 1012
BfaI	CTAG	4 cut(s)	89, 132, 803, 887
BfoI	RGCGCY	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	726
BfuI	GTATCC	1 cut(s)	721
BisI	GCNGC	2 cut(s)	54, 524
BlsI	GCNGC	2 cut(s)	55, 525
Bme1390I	CCNGG	2 cut(s)	948, 1043
Bme18I	GGWCC	2 cut(s)	194, 460
BmgT120I	GGNCC	2 cut(s)	194, 460
BmiI	GGNNCC	1 cut(s)	1040
BmrFI	CCNGG	2 cut(s)	948, 1043
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	1 cut(s)	589
BmuI	ACTGGG	1 cut(s)	573
BpiI	GAAGAC	2 cut(s)	498, 761
BpmI	CTGGAG	1 cut(s)	358
Bpu10I	CCTNAGC	2 cut(s)	722, 1068
Bpu14I	TTCGAA	1 cut(s)	9
BpuEI	CTTGAG	3 cut(s)	715, 764, 1001
BsaI	GGTCTC	1 cut(s)	1012
BsaJI	CCNNGG	1 cut(s)	946
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 724
Bse1I	ACTGG	4 cut(s)	204, 462, 568, 817
Bse3DI	GCAATG	2 cut(s)	913, 1065
BseBI	CCWGG	2 cut(s)	948, 1043
BseDI	CCNNGG	1 cut(s)	946
BseGI	GGATG	2 cut(s)	742, 942
BseLI	CCNNNNNNNGG	2 cut(s)	137, 724
BseMI	GCAATG	2 cut(s)	913, 1065
BseMII	CTCAG	3 cut(s)	272, 598, 713
BseNI	ACTGG	4 cut(s)	204, 462, 568, 817
BseXI	GCAGC	2 cut(s)	40, 535
BsgI	GTGCAG	2 cut(s)	297, 542
BshNI	GGYRCC	1 cut(s)	1038
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	137, 724
BsmAI	GTCTC	4 cut(s)	112, 491, 856, 1012
Bso31I	GGTCTC	1 cut(s)	1012
Bsp119I	TTCGAA	1 cut(s)	9
Bsp143I	GATC	5 cut(s)	94, 244, 452, 832, 889
BspACI	CCGC	1 cut(s)	776
BspCNI	CTCAG	3 cut(s)	273, 597, 714
BspHI	TCATGA	1 cut(s)	829
BspLI	GGNNCC	1 cut(s)	1040
BspMI	ACCTGC	1 cut(s)	726
BspPI	GGATC	2 cut(s)	460, 827
BspQI	GCTCTTC	1 cut(s)	570
BspT104I	TTCGAA	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	1038
BspTNI	GGTCTC	1 cut(s)	1012
BsrBI	CCGCTC	1 cut(s)	778
BsrDI	GCAATG	2 cut(s)	913, 1065
BsrI	ACTGG	4 cut(s)	204, 462, 568, 817
BssECI	CCNNGG	1 cut(s)	946
BssMI	GATC	5 cut(s)	94, 244, 452, 832, 889
Bst2UI	CCWGG	2 cut(s)	948, 1043
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	2 cut(s)	512, 570
BstAPI	GCANNNNNTGC	1 cut(s)	1060
BstBI	TTCGAA	1 cut(s)	9
BstC8I	GCNNGC	3 cut(s)	58, 596, 1056
BstDEI	CTNAG	4 cut(s)	281, 584, 722, 1068
BstF5I	GGATG	2 cut(s)	742, 942
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	287, 886
BstKTI	GATC	5 cut(s)	97, 247, 455, 835, 892
BstMAI	GTCTC	4 cut(s)	112, 491, 856, 1012
BstMBI	GATC	5 cut(s)	94, 244, 452, 832, 889
BstMWI	GCNNNNNNNGC	3 cut(s)	920, 1060, 1069
BstNI	CCWGG	2 cut(s)	948, 1043
BstNSI	RCATGY	3 cut(s)	60, 188, 598
BstSCI	CCNGG	2 cut(s)	946, 1041
BstV1I	GCAGC	2 cut(s)	40, 535
BstV2I	GAAGAC	2 cut(s)	498, 761
BsuI	GTATCC	1 cut(s)	721
BtgZI	GCGATG	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	742, 942
BtsIMutI	CAGTG	3 cut(s)	197, 455, 1056
BveI	ACCTGC	1 cut(s)	726
Cac8I	GCNNGC	3 cut(s)	58, 596, 1056
CciI	TCATGA	1 cut(s)	829
CfoI	GCGC	2 cut(s)	287, 886
Cfr13I	GGNCC	2 cut(s)	194, 460
Csp6I	GTAC	3 cut(s)	43, 402, 784
CviAII	CATG	5 cut(s)	57, 185, 362, 595, 830
CviJI	RGCY	7 cut(s)	130, 270, 526, 655, 771, 914, 1003
CviKI_1	RGCY	7 cut(s)	130, 270, 526, 655, 771, 914, 1003
CviQI	GTAC	3 cut(s)	43, 402, 784
DdeI	CTNAG	4 cut(s)	281, 584, 722, 1068
DpnI	GATC	5 cut(s)	96, 246, 454, 834, 891
DpnII	GATC	5 cut(s)	94, 244, 452, 832, 889
DraI	TTTAAA	1 cut(s)	358
Eam1104I	CTCTTC	2 cut(s)	512, 570
EarI	CTCTTC	2 cut(s)	512, 570
Eco31I	GGTCTC	1 cut(s)	1012
Eco32I	GATATC	1 cut(s)	814
Eco47I	GGWCC	2 cut(s)	194, 460
Eco47III	AGCGCT	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	946, 1041
EcoRV	GATATC	1 cut(s)	814
FaeI	CATG	5 cut(s)	60, 188, 365, 598, 833
FatI	CATG	5 cut(s)	56, 184, 361, 594, 829
FauI	CCCGC	1 cut(s)	783
FauNDI	CATATG	1 cut(s)	838
Fnu4HI	GCNGC	2 cut(s)	54, 524
FokI	GGATG	2 cut(s)	729, 929
Fsp4HI	GCNGC	2 cut(s)	54, 524
FspBI	CTAG	4 cut(s)	89, 132, 803, 887
GlaI	GCGC	2 cut(s)	286, 885
GluI	GCNGC	2 cut(s)	54, 524
GsuI	CTGGAG	1 cut(s)	358
HaeII	RGCGCY	1 cut(s)	288
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	2 cut(s)	287, 886
Hin1II	CATG	5 cut(s)	60, 188, 365, 598, 833
Hin6I	GCGC	2 cut(s)	285, 884
HinP1I	GCGC	2 cut(s)	285, 884
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	4 cut(s)	170, 864, 959, 1046
HpaI	GTTAAC	1 cut(s)	570
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	2 cut(s)	181, 781
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	5 cut(s)	232, 282, 587, 750, 897
Hpy188III	TCNNGA	4 cut(s)	419, 710, 830, 1017
Hpy8I	GTNNAC	1 cut(s)	570
HpyAV	CCTTC	1 cut(s)	896
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	390
HpyF10VI	GCNNNNNNNGC	3 cut(s)	920, 1060, 1069
HpyF3I	CTNAG	4 cut(s)	281, 584, 722, 1068
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	5 cut(s)	60, 188, 365, 598, 833
HspAI	GCGC	2 cut(s)	285, 884
KspAI	GTTAAC	1 cut(s)	570
Kzo9I	GATC	5 cut(s)	94, 244, 452, 832, 889
LguI	GCTCTTC	1 cut(s)	570
LmnI	GCTCC	2 cut(s)	181, 340
Lsp1109I	GCAGC	2 cut(s)	40, 535
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	4 cut(s)	89, 132, 803, 887
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	3 cut(s)	187, 328, 559
MalI	GATC	5 cut(s)	96, 246, 454, 834, 891
MbiI	CCGCTC	1 cut(s)	778
MboI	GATC	5 cut(s)	94, 244, 452, 832, 889
MboII	GAAGA	8 cut(s)	268, 362, 499, 503, 587, 766, 854, 997
MfeI	CAATTG	1 cut(s)	411
MluCI	AATT	6 cut(s)	211, 274, 353, 411, 544, 630
MlyI	GAGTC	1 cut(s)	858
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	7 cut(s)	171, 333, 515, 717, 756, 797, 1077
MseI	TTAA	4 cut(s)	102, 357, 543, 569
MslI	CAYNNNNRTG	3 cut(s)	102, 516, 518
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	948, 1043
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	2 cut(s)	948, 1043
MwoI	GCNNNNNNNGC	3 cut(s)	920, 1060, 1069
NdeI	CATATG	1 cut(s)	838
NdeII	GATC	5 cut(s)	94, 244, 452, 832, 889
NlaIII	CATG	5 cut(s)	60, 188, 365, 598, 833
NlaIV	GGNNCC	1 cut(s)	1040
NmuCI	GTSAC	1 cut(s)	187
NspI	RCATGY	3 cut(s)	60, 188, 598
NspV	TTCGAA	1 cut(s)	9
OliI	CACNNNNGTG	1 cut(s)	518
PaeI	GCATGC	2 cut(s)	60, 598
PagI	TCATGA	1 cut(s)	829
PciSI	GCTCTTC	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PfeI	GAWTC	3 cut(s)	170, 959, 1046
PkrI	GCNGC	2 cut(s)	55, 525
PleI	GAGTC	1 cut(s)	858
PpsI	GAGTC	1 cut(s)	858
PshBI	ATTAAT	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	946, 1041
PspGI	CCWGG	2 cut(s)	946, 1041
PspN4I	GGNNCC	1 cut(s)	1040
PspPI	GGNCC	2 cut(s)	194, 460
RsaI	GTAC	3 cut(s)	44, 403, 785
RsaNI	GTAC	3 cut(s)	43, 402, 784
RseI	CAYNNNNRTG	3 cut(s)	102, 516, 518
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	4 cut(s)	102, 357, 543, 569
SatI	GCNGC	2 cut(s)	54, 524
Sau3AI	GATC	5 cut(s)	94, 244, 452, 832, 889
Sau96I	GGNCC	2 cut(s)	194, 460
SchI	GAGTC	1 cut(s)	858
ScrFI	CCNGG	2 cut(s)	948, 1043
SfaNI	GCATC	1 cut(s)	589
SfuI	TTCGAA	1 cut(s)	9
SinI	GGWCC	2 cut(s)	194, 460
SmiMI	CAYNNNNRTG	3 cut(s)	102, 516, 518
SmlI	CTYRAG	3 cut(s)	694, 779, 980
SmoI	CTYRAG	3 cut(s)	694, 779, 980
SphI	GCATGC	2 cut(s)	60, 598
Sse9I	AATT	6 cut(s)	211, 274, 353, 411, 544, 630
SsiI	CCGC	1 cut(s)	776
SspMI	CTAG	4 cut(s)	89, 132, 803, 887
StyD4I	CCNGG	2 cut(s)	946, 1041
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	4 cut(s)	9, 93, 996, 1016
TasI	AATT	6 cut(s)	211, 274, 353, 411, 544, 630
TfiI	GAWTC	3 cut(s)	170, 959, 1046
Tru1I	TTAA	4 cut(s)	102, 357, 543, 569
Tru9I	TTAA	4 cut(s)	102, 357, 543, 569
TscAI	CASTG	3 cut(s)	204, 462, 1056
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	53, 523
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	8 cut(s)	113, 504, 570, 716, 767, 818, 855, 1023
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	3 cut(s)	204, 462, 1056
VpaK11BI	GGWCC	2 cut(s)	194, 460
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	2 cut(s)	353, 630
XceI	RCATGY	3 cut(s)	60, 188, 598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658
XspI	CTAG	4 cut(s)	89, 132, 803, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.