Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002308

Physical Location & Seq

Genomic Coordinates Reverse (-)

35383306 .. 35384653

Gene Structure 1348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0220900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCAAGCAATTGAGAATGCCTTGCGAGGTCAGGACTCTGACCATTTTCAGGAAGCAGTTAGAGTTCTTGACATCATTATAAGGCAGAATGCCGCAAAGCAGGGTTGTCTCCTTGTTCGGCAATCTTTTTTCCATAACAACCCGAGGAACTTCATAGAATTGGGAGGAGGGGTGTTAGGCTGCAGGGGTTTTCATTCAAGCTTCCGGGCCACGCAAGGCAGCCTATCCCTGAATATGGATGTGTCCACTACAATGATTGTAAAACCTGGTCCTGTTTTGAATTTCCTCATAGAGAACCAGAATGTCAAAACTCCTTACCAGATTGATTGGATTAAGGTTGAGACCTATGCTTCCAAGATGGAGTACAAAATCACTGGATTGAGCGATAAACCCTGCAAACAGCAGATGTTCTTTTTGAAATCAAAAGGAGGACAGGATGGAGATGGAGAAGAGATCACTGTTTATGAATACTTTGCCCAGCATAAGCACATGCAGTTACGCGATTCAGCAGATTTTCCCTGCATCAATGTTGGAAAACCAAAGAAACCTTCTTACTTTCCCCTAGAGGTGATATATTATCTTCAAATATATAATGTTAAAATGAATACCCTAGTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

206

Amino Acids

23.48

Weight (kDa)

8.59

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoL1	PF08699	39 - 88	2e-18	Argonaute linker 1 domain
PAZ	PF02170	112 - 192	1.1e-15	PAZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100
fragaria_vesca	FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651
malus_domestica	MD14G1090000.v1.1 MD14G1090200.v1.1
prunus_persica	Prupe.1G564900_v2.0.a1 Prupe.1G565600_v2.0.a1 Prupe.8G245200_v2.0.a1
pyrus_communis	pycom14g08070 pycom14g08080
rosa_chinensis	RchiOBHm_Chr6g0291701
rosa_laevigata	RLG00000012097
rosa_multiflora	Rmu_sc0002226.1_g000018
rosa_roxburghii	Rroxscaffold_7G00175840
rosa_rugosa	Rorug06G0220700 Rorug06G0220900
rosa_samantha	Rh6AG333500 Rh6BG340300 Rh6BG340500 Rh6CG346700 Rh6DG333800 Rh6DG333900
rosa_wichuraiana	Rw6G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
AccII	CGCG	1 cut(s)	501
AciI	CCGC	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	280
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	49, 235
AgsI	TTSAA	4 cut(s)	198, 280, 418, 584
AjnI	CCWGG	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
AluBI	AGCT	1 cut(s)	201
AluI	AGCT	1 cut(s)	201
Alw26I	GTCTC	2 cut(s)	113, 335
Ama87I	CYCGRG	1 cut(s)	142
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	180, 219
ApoI	RAATTY	1 cut(s)	280
AspS9I	GGNCC	2 cut(s)	207, 269
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	580
AvaI	CYCGRG	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	167, 231
BccI	CCATC	3 cut(s)	352, 431, 437
BciT130I	CCWGG	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	113, 335
BfaI	CTAG	2 cut(s)	563, 611
BfmI	CTRYAG	1 cut(s)	181
BisI	GCNGC	3 cut(s)	93, 181, 220
BlsI	GCNGC	3 cut(s)	94, 182, 221
Bme1390I	CCNGG	2 cut(s)	206, 267
Bme18I	GGWCC	1 cut(s)	269
BmeT110I	CYCGRG	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	207, 269
BmrFI	CCNGG	2 cut(s)	206, 267
BmsI	GCATC	1 cut(s)	531
BpuMI	CCSGG	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 235
Bse1I	ACTGG	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	2 cut(s)	244, 442
BseLI	CCNNNNNNNGG	2 cut(s)	49, 235
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	167, 231
BseYI	CCCAGC	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	501
BshFI	GGCC	1 cut(s)	209
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	49, 235
BsmAI	GTCTC	2 cut(s)	113, 335
BsmI	GAATGC	2 cut(s)	22, 94
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	453
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	501
BspMAI	CTGCAG	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	244, 442
BstFNI	CGCG	1 cut(s)	501
BstKTI	GATC	1 cut(s)	456
BstMAI	GTCTC	2 cut(s)	113, 335
BstMBI	GATC	1 cut(s)	453
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	2 cut(s)	204, 265
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	1 cut(s)	501
BstV1I	GCAGC	2 cut(s)	167, 231
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	244, 442
BtsIMutI	CAGTG	2 cut(s)	372, 456
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	207, 269
CsiI	ACCWGGT	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	1 cut(s)	490
CviJI	RGCY	4 cut(s)	180, 201, 209, 222
CviKI_1	RGCY	4 cut(s)	180, 201, 209, 222
CviQI	GTAC	1 cut(s)	364
DpnI	GATC	1 cut(s)	455
DpnII	GATC	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	265
FaeI	CATG	1 cut(s)	493
FatI	CATG	1 cut(s)	489
Fnu4HI	GCNGC	3 cut(s)	93, 181, 220
FokI	GGATG	2 cut(s)	251, 449
Fsp4HI	GCNGC	3 cut(s)	93, 181, 220
FspBI	CTAG	2 cut(s)	563, 611
GluI	GCNGC	3 cut(s)	93, 181, 220
GsaI	CCCAGC	1 cut(s)	481
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	1 cut(s)	493
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	2 cut(s)	35, 503
HpaI	GTTAAC	1 cut(s)	616
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	580
Hpy166II	GTNNAC	2 cut(s)	246, 616
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	3 cut(s)	32, 50, 68
Hpy8I	GTNNAC	2 cut(s)	246, 616
HpyAV	CCTTC	1 cut(s)	558
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	5 cut(s)	4, 183, 396, 493, 522
Hsp92II	CATG	1 cut(s)	493
KspAI	GTTAAC	1 cut(s)	616
Kzo9I	GATC	1 cut(s)	453
Lsp1109I	GCAGC	2 cut(s)	167, 231
LweI	GCATC	1 cut(s)	531
MabI	ACCWGGT	1 cut(s)	265
MaeI	CTAG	2 cut(s)	563, 611
MaeIII	GTNAC	1 cut(s)	495
MalI	GATC	1 cut(s)	455
MboI	GATC	1 cut(s)	453
MboII	GAAGA	2 cut(s)	461, 572
MfeI	CAATTG	1 cut(s)	9
MluCI	AATT	3 cut(s)	9, 158, 280
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	7 cut(s)	20, 138, 158, 161, 296, 422, 559
MseI	TTAA	3 cut(s)	333, 597, 615
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	2 cut(s)	206, 267
MunI	CAATTG	1 cut(s)	9
Mva1269I	GAATGC	2 cut(s)	22, 94
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	501
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	1 cut(s)	453
NlaIII	CATG	1 cut(s)	493
NspI	RCATGY	1 cut(s)	493
PctI	GAATGC	2 cut(s)	22, 94
PfeI	GAWTC	1 cut(s)	503
PkrI	GCNGC	3 cut(s)	94, 182, 221
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PsiI	TTATAA	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	265
PspPI	GGNCC	2 cut(s)	207, 269
PstI	CTGCAG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	3 cut(s)	333, 597, 615
SatI	GCNGC	3 cut(s)	93, 181, 220
Sau3AI	GATC	1 cut(s)	453
Sau96I	GGNCC	2 cut(s)	207, 269
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	206, 267
SetI	ASST	7 cut(s)	31, 203, 268, 339, 347, 550, 570
SexAI	ACCWGGT	1 cut(s)	265
SfaNI	GCATC	1 cut(s)	531
SfcI	CTRYAG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	3 cut(s)	9, 158, 280
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	2 cut(s)	563, 611
StyD4I	CCNGG	2 cut(s)	204, 265
TaaI	ACNGT	1 cut(s)	460
TasI	AATT	3 cut(s)	9, 158, 280
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	3 cut(s)	333, 597, 615
Tru9I	TTAA	3 cut(s)	333, 597, 615
TscAI	CASTG	2 cut(s)	379, 463
TseI	GCWGC	2 cut(s)	180, 219
TspDTI	ATGAA	4 cut(s)	142, 182, 480, 617
TspRI	CASTG	2 cut(s)	379, 463
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	280
XceI	RCATGY	1 cut(s)	493
XspI	CTAG	2 cut(s)	563, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.