Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002308

Physical Location & Seq

Genomic Coordinates Reverse (-)

11433016 .. 11434499

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1090000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAAGATCACGTTGGAGAGGGTCTTGAAGCAGTTGCTCTGGAATGTGAAATGGTTTGGGGTGGAAGTGATGGATCACTGGACCTATGTGCAAGAGTGCCTGATTGATGAATATGAGAATATCCTCTTCCACACTAATGTATATGAAGTTACTGGGTTAATAGAAGAGCATCTTAGAAATGCCATGCCATATGAAAATGTGCAAGAGAAAATTTTGCAAATTTTGTACAGTGGAAAGACCAAGGTTCTTGTGGGGCATAATTTGGACTGGGTGGACACTGCAAACTACCATCTGCTGATGAAAACAAATTTGGTCAGTCACTCGCTCAAGTACCTCACACAAACATATCTAGGGCAAGTTTTTCTCTTTCTCATACTTAACTTTTTTCTTTTGGTTTATGCTGATTTTAGTTTGTTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

141

Amino Acids

16.77

Weight (kDa)

5.6

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100
fragaria_vesca	FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651
malus_domestica	MD14G1090000.v1.1 MD14G1090200.v1.1
prunus_persica	Prupe.1G564900_v2.0.a1 Prupe.1G565600_v2.0.a1 Prupe.8G245200_v2.0.a1
pyrus_communis	pycom14g08070 pycom14g08080
rosa_chinensis	RchiOBHm_Chr6g0291701
rosa_laevigata	RLG00000012097
rosa_multiflora	Rmu_sc0002226.1_g000018
rosa_roxburghii	Rroxscaffold_7G00175840
rosa_rugosa	Rorug06G0220700 Rorug06G0220900
rosa_samantha	Rh6AG333500 Rh6BG340300 Rh6BG340500 Rh6CG346700 Rh6DG333800 Rh6DG333900
rosa_wichuraiana	Rw6G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	3 cut(s)	210, 219, 307
AfaI	GTAC	2 cut(s)	227, 332
AgsI	TTSAA	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	3 cut(s)	28, 293, 325
AlwI	GGATC	1 cut(s)	81
ApoI	RAATTY	3 cut(s)	210, 219, 307
AspS9I	GGNCC	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	81
BccI	CCATC	2 cut(s)	64, 297
BfaI	CTAG	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	81
BmrI	ACTGGG	2 cut(s)	162, 277
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	2 cut(s)	162, 277
BpuEI	CTTGAG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	240
Bse1I	ACTGG	3 cut(s)	83, 157, 272
BseDI	CCNNGG	1 cut(s)	240
BseNI	ACTGG	3 cut(s)	83, 157, 272
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	6, 73
BspPI	GGATC	1 cut(s)	81
BspQI	GCTCTTC	1 cut(s)	159
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	3 cut(s)	83, 157, 272
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	2 cut(s)	6, 73
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	2 cut(s)	131, 159
BstAUI	TGTACA	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	173
BstKTI	GATC	2 cut(s)	9, 76
BstMBI	GATC	2 cut(s)	6, 73
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	3 cut(s)	76, 235, 276
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	226, 331
CviAII	CATG	1 cut(s)	184
CviQI	GTAC	2 cut(s)	226, 331
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	2 cut(s)	8, 75
DpnII	GATC	2 cut(s)	6, 73
Eam1104I	CTCTTC	2 cut(s)	131, 159
EarI	CTCTTC	2 cut(s)	131, 159
Eco130I	CCWWGG	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	1 cut(s)	187
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	1 cut(s)	183
FauNDI	CATATG	1 cut(s)	190
FspBI	CTAG	1 cut(s)	350
Hin1II	CATG	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188III	TCNNGA	2 cut(s)	25, 40
Hpy8I	GTNNAC	1 cut(s)	274
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	4 cut(s)	91, 202, 217, 281
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	6, 73
LguI	GCTCTTC	1 cut(s)	159
LpnPI	CCDG	5 cut(s)	25, 64, 113, 138, 253
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	148, 317
MalI	GATC	2 cut(s)	8, 75
MboI	GATC	2 cut(s)	6, 73
MboII	GAAGA	3 cut(s)	16, 118, 176
MluCI	AATT	4 cut(s)	210, 219, 259, 307
MnlI	CCTC	3 cut(s)	12, 134, 344
MseI	TTAA	2 cut(s)	158, 378
MslI	CAYNNNNRTG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	2 cut(s)	6, 73
NlaIII	CATG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	81
RsaI	GTAC	2 cut(s)	227, 332
RsaNI	GTAC	2 cut(s)	226, 331
RseI	CAYNNNNRTG	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	158, 378
Sau3AI	GATC	2 cut(s)	6, 73
Sau96I	GGNCC	1 cut(s)	81
SetI	ASST	4 cut(s)	14, 86, 246, 336
SfaNI	GCATC	1 cut(s)	178
SinI	GGWCC	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	4 cut(s)	210, 219, 259, 307
SspMI	CTAG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	14
TasI	AATT	4 cut(s)	210, 219, 259, 307
TatI	WGTACW	1 cut(s)	225
Tru1I	TTAA	2 cut(s)	158, 378
Tru9I	TTAA	2 cut(s)	158, 378
TscAI	CASTG	3 cut(s)	83, 235, 283
TseFI	GTSAC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	5 cut(s)	17, 123, 159, 207, 314
TspRI	CASTG	3 cut(s)	83, 235, 283
VpaK11BI	GGWCC	1 cut(s)	81
XapI	RAATTY	3 cut(s)	210, 219, 307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.