Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002308

Physical Location & Seq

Genomic Coordinates Reverse (-)

46125324 .. 46127223

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G564900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTGGAGTGTGTCGCACTTCAAATCTTTTGAATCACAGAGAGAGCATATCACTAGACCACTGGCAAAAGAAGATTGCAAGAGGGTTTTCTCTGAACAAGGTTGTGATCTATGTTTGAAGCTTTTTGATAGCCCTACTTCTCTGAGCTCGCATAAATATATGTGTCGCCTATCTGCGCCTGTTTCTCTGGGAACAACGATGGAGCCATGTGAAGAATTTAAATATGATATAAACTCCAGCAAGGAAAATCACATTGGAGATGGTACGGAAGCAATTGCTCTGGATTGTGAAATGGTTGCTGGTGGAAGTGATGGATCACTACCTGCGTGCAAGGGTAATGGAAAGACCAAGATTCTTGTAGGGCATAGTTTAGAGAATGATTTGGATTGCTTGAGAATAAACTGCCCTGATTACCTGCTTAGGGATACTGCAAGCTACCATCCAGTGATGAAAACAAATCTGGTTAGCCACCCGCTCAAGTACCTGACCAGAACATATCTAGGTGAATATTTAGTGTCAGGTTTTCATGATCCATATGAAGATTGTGTGTCTGCTATGAGACTGTACAAAAGATTCCGTGGGCTAGATCAACAGAAAGAAGGCAATGTGGAATCACTTGCTACTATGCGTGCAAAAGACATCCCCGGAAGTTTTGATTCATGGGAAACCGACAAAGTTGAGAAGATGACGCTCGATGAGCTTTATGAAATGTCGAGACCAAACTACAAGTGTTGGTGCCTGGATTCAGTGCAAGCAATGCAACCTCATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

258

Amino Acids

29.19

Weight (kDa)

5.69

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100
fragaria_vesca	FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651
malus_domestica	MD14G1090000.v1.1 MD14G1090200.v1.1
prunus_persica	Prupe.1G564900_v2.0.a1 Prupe.1G565600_v2.0.a1 Prupe.8G245200_v2.0.a1
pyrus_communis	pycom14g08070 pycom14g08080
rosa_chinensis	RchiOBHm_Chr6g0291701
rosa_laevigata	RLG00000012097
rosa_multiflora	Rmu_sc0002226.1_g000018
rosa_roxburghii	Rroxscaffold_7G00175840
rosa_rugosa	Rorug06G0220700 Rorug06G0220900
rosa_samantha	Rh6AG333500 Rh6BG340300 Rh6BG340500 Rh6CG346700 Rh6DG333800 Rh6DG333900
rosa_wichuraiana	Rw6G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	331, 423
AccB1I	GGYRCC	1 cut(s)	735
AccBSI	CCGCTC	1 cut(s)	475
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	2 cut(s)	322, 524
AcsI	RAATTY	1 cut(s)	215
AfaI	GTAC	3 cut(s)	265, 482, 566
AfiI	CCNNNNNNNGG	1 cut(s)	421
AgsI	TTSAA	3 cut(s)	22, 32, 118
AjnI	CCWGG	1 cut(s)	738
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AluBI	AGCT	4 cut(s)	121, 147, 435, 700
AluI	AGCT	4 cut(s)	121, 147, 435, 700
Alw21I	GWGCWC	1 cut(s)	149
Alw26I	GTCTC	2 cut(s)	553, 709
AlwI	GGATC	2 cut(s)	322, 524
ApoI	RAATTY	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	645
AsuHPI	GGTGA	1 cut(s)	515
BanI	GGYRCC	1 cut(s)	735
BanII	GRGCYC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	149
BccI	CCATC	4 cut(s)	193, 254, 305, 447
BciT130I	CCWGG	1 cut(s)	740
BciVI	GTATCC	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	645
BcoDI	GTCTC	2 cut(s)	553, 709
BfaI	CTAG	3 cut(s)	54, 500, 584
BfuAI	ACCTGC	2 cut(s)	331, 423
BfuI	GTATCC	1 cut(s)	418
Bme1390I	CCNGG	2 cut(s)	645, 740
BmiI	GGNNCC	2 cut(s)	204, 737
BmrFI	CCNGG	2 cut(s)	645, 740
BpmI	CTGGAG	1 cut(s)	220
Bpu10I	CCTNAGC	1 cut(s)	419
BpuEI	CTTGAG	2 cut(s)	412, 461
BpuMI	CCSGG	1 cut(s)	645
BsaI	GGTCTC	1 cut(s)	709
BsaJI	CCNNGG	2 cut(s)	577, 643
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse1I	ACTGG	2 cut(s)	66, 443
Bse3DI	GCAATG	2 cut(s)	610, 762
BseBI	CCWGG	1 cut(s)	740
BseDI	CCNNGG	2 cut(s)	577, 643
BseGI	GGATG	2 cut(s)	439, 639
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMI	GCAATG	2 cut(s)	610, 762
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	66, 443
BshNI	GGYRCC	1 cut(s)	735
BsiHKAI	GWGCWC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	645
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	2 cut(s)	553, 709
Bso31I	GGTCTC	1 cut(s)	709
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	4 cut(s)	106, 314, 529, 586
BspACI	CCGC	1 cut(s)	473
BspCNI	CTCAG	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	204, 737
BspMI	ACCTGC	2 cut(s)	331, 423
BspPI	GGATC	2 cut(s)	322, 524
BspT107I	GGYRCC	1 cut(s)	735
BspTNI	GGTCTC	1 cut(s)	709
BsrBI	CCGCTC	1 cut(s)	475
BsrDI	GCAATG	2 cut(s)	610, 762
BsrGI	TGTACA	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	66, 443
BssECI	CCNNGG	2 cut(s)	577, 643
BssMI	GATC	4 cut(s)	106, 314, 529, 586
Bst2UI	CCWGG	1 cut(s)	740
Bst4CI	ACNGT	1 cut(s)	564
BstAPI	GCANNNNNTGC	1 cut(s)	757
BstAUI	TGTACA	1 cut(s)	564
BstC8I	GCNNGC	5 cut(s)	149, 328, 433, 630, 753
BstDEI	CTNAG	2 cut(s)	143, 419
BstDSI	CCRYGG	1 cut(s)	577
BstF5I	GGATG	2 cut(s)	439, 639
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	4 cut(s)	109, 317, 532, 589
BstMAI	GTCTC	2 cut(s)	553, 709
BstMBI	GATC	4 cut(s)	106, 314, 529, 586
BstMWI	GCNNNNNNNGC	2 cut(s)	697, 757
BstNI	CCWGG	1 cut(s)	740
BstSCI	CCNGG	2 cut(s)	643, 738
BsuI	GTATCC	1 cut(s)	418
BtgI	CCRYGG	1 cut(s)	577
BtsCI	GGATG	2 cut(s)	439, 639
BtsIMutI	CAGTG	3 cut(s)	59, 450, 753
BveI	ACCTGC	2 cut(s)	331, 423
Cac8I	GCNNGC	5 cut(s)	149, 328, 433, 630, 753
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	1 cut(s)	178
CseI	GACGC	1 cut(s)	697
Csp6I	GTAC	3 cut(s)	264, 481, 565
CviAII	CATG	3 cut(s)	207, 527, 660
CviJI	RGCY	8 cut(s)	121, 132, 147, 205, 435, 468, 583, 700
CviKI_1	RGCY	8 cut(s)	121, 132, 147, 205, 435, 468, 583, 700
CviQI	GTAC	3 cut(s)	264, 481, 565
DdeI	CTNAG	2 cut(s)	143, 419
DpnI	GATC	4 cut(s)	108, 316, 531, 588
DpnII	GATC	4 cut(s)	106, 314, 529, 586
DraI	TTTAAA	1 cut(s)	220
Ecl136II	GAGCTC	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	709
Eco53kI	GAGCTC	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	738
EcoT38I	GRGCYC	1 cut(s)	149
FaeI	CATG	3 cut(s)	210, 530, 663
FatI	CATG	3 cut(s)	206, 526, 659
FauI	CCCGC	1 cut(s)	480
FauNDI	CATATG	1 cut(s)	535
FokI	GGATG	2 cut(s)	426, 626
FriOI	GRGCYC	1 cut(s)	149
FspBI	CTAG	3 cut(s)	54, 500, 584
GlaI	GCGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	220
HapII	CCGG	1 cut(s)	645
HgaI	GACGC	1 cut(s)	697
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	3 cut(s)	210, 530, 663
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	6 cut(s)	32, 352, 573, 611, 656, 743
HpaII	CCGG	1 cut(s)	645
HphI	GGTGA	1 cut(s)	515
Hpy188I	TCNGA	2 cut(s)	94, 144
Hpy188III	TCNNGA	3 cut(s)	281, 527, 714
HpyAV	CCTTC	1 cut(s)	593
HpyCH4III	ACNGT	1 cut(s)	564
HpyCH4V	TGCA	6 cut(s)	78, 330, 431, 632, 751, 760
HpyF10VI	GCNNNNNNNGC	2 cut(s)	697, 757
HpyF3I	CTNAG	2 cut(s)	143, 419
Hsp92II	CATG	3 cut(s)	210, 530, 663
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	4 cut(s)	106, 314, 529, 586
LmnI	GCTCC	1 cut(s)	202
MaeI	CTAG	3 cut(s)	54, 500, 584
MalI	GATC	4 cut(s)	108, 316, 531, 588
MbiI	CCGCTC	1 cut(s)	475
MboI	GATC	4 cut(s)	106, 314, 529, 586
MboII	GAAGA	4 cut(s)	83, 224, 551, 694
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	2 cut(s)	215, 273
MnlI	CCTC	2 cut(s)	75, 774
MseI	TTAA	1 cut(s)	219
MspI	CCGG	1 cut(s)	645
MspR9I	CCNGG	2 cut(s)	645, 740
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	740
MwoI	GCNNNNNNNGC	2 cut(s)	697, 757
NciI	CCSGG	1 cut(s)	645
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	4 cut(s)	106, 314, 529, 586
NlaIII	CATG	3 cut(s)	210, 530, 663
NlaIV	GGNNCC	2 cut(s)	204, 737
PagI	TCATGA	1 cut(s)	526
PfeI	GAWTC	6 cut(s)	32, 352, 573, 611, 656, 743
Psp124BI	GAGCTC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	738
PspGI	CCWGG	1 cut(s)	738
PspN4I	GGNNCC	2 cut(s)	204, 737
RsaI	GTAC	3 cut(s)	265, 482, 566
RsaNI	GTAC	3 cut(s)	264, 481, 565
SacI	GAGCTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	219
Sau3AI	GATC	4 cut(s)	106, 314, 529, 586
ScrFI	CCNGG	2 cut(s)	645, 740
SduI	GDGCHC	1 cut(s)	149
SmiI	ATTTAAAT	1 cut(s)	220
SmlI	CTYRAG	2 cut(s)	391, 476
SmoI	CTYRAG	2 cut(s)	391, 476
Sse9I	AATT	2 cut(s)	215, 273
SsiI	CCGC	1 cut(s)	473
SspI	AATATT	1 cut(s)	509
SspMI	CTAG	3 cut(s)	54, 500, 584
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	2 cut(s)	643, 738
SwaI	ATTTAAAT	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	564
TaqI	TCGA	2 cut(s)	693, 713
TasI	AATT	2 cut(s)	215, 273
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	6 cut(s)	32, 352, 573, 611, 656, 743
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	3 cut(s)	66, 450, 753
TspDTI	ATGAA	5 cut(s)	464, 515, 552, 648, 720
TspGWI	ACGGA	2 cut(s)	281, 566
TspRI	CASTG	3 cut(s)	66, 450, 753
XapI	RAATTY	1 cut(s)	215
XspI	CTAG	3 cut(s)	54, 500, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.