Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002308

Physical Location & Seq

Genomic Coordinates Reverse (-)

8522128 .. 8524128

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g08080.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGACTCCGAGCCAGACTCTCCAAAAACCAAAAGAACAAGGTACGAATGTGCTGCATGTTACAAGCAGTACAAGCAAAGGGAACATCTTTTCGAGCACATTAAGGGCTCCTTCCACTCAGTTCATCAGCCGAGATGTGGTGTGTGTAAAAAGCACTTCATGTCTTTTCAATCACTGAGGGAACATCTCACTGGCTCATTGGCAAAAGCATTTTGCAAGACGATTTTCACTGAACAAGGTTGCCATCTATGTCTGAAGCTTTTTGATAGCGCTACTTCTCGGAGCGAGCATAAAAACACGTGTTGCCTGTCTGCGCCTACTCCTATGGGAACAACAATGATGCCAAGTGCAGAATCTAAATCTGATATAAAGTTGAGCAACGAAGATCACGTTGGAGGGGGTCTTGAAGCAGTTGCTCTGGATTGTGAAATGGTTTGGGGTGGAAGTGATGGATCACTGGACCTATGTGCAAGAGTGTGCCTGATTGATGAAGATGAGAATATCCTCTTCCACACTTATGTGCAGCCCCAAATTGCTGTCACTAATTACAGATATGAAGTTACTGGGTTAATGGAGGAGCATATTAGAAATGCCATGCCACTTGAAAAAGTGCAAGAGAAAATTTTGCGAATTTTATACAGTGGAAAGACCAAGGTTCTTGTGGGGCATAATTTGGACCGGGATATGGATTGCTTGAGATTCAATTATCCTGATTACCTGCTGAGACTGCAAACTACCATCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

249

Amino Acids

28.28

Weight (kDa)

6.85

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100
fragaria_vesca	FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651
malus_domestica	MD14G1090000.v1.1 MD14G1090200.v1.1
prunus_persica	Prupe.1G564900_v2.0.a1 Prupe.1G565600_v2.0.a1 Prupe.8G245200_v2.0.a1
pyrus_communis	pycom14g08070 pycom14g08080
rosa_chinensis	RchiOBHm_Chr6g0291701
rosa_laevigata	RLG00000012097
rosa_multiflora	Rmu_sc0002226.1_g000018
rosa_roxburghii	Rroxscaffold_7G00175840
rosa_rugosa	Rorug06G0220700 Rorug06G0220900
rosa_samantha	Rh6AG333500 Rh6BG340300 Rh6BG340500 Rh6CG346700 Rh6DG333800 Rh6DG333900
rosa_wichuraiana	Rw6G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	726
AciI	CCGC	1 cut(s)	742
AclWI	GGATC	1 cut(s)	460
AcsI	RAATTY	2 cut(s)	621, 630
AcuI	CTGAAG	1 cut(s)	275
AcvI	CACGTG	1 cut(s)	300
AfaI	GTAC	2 cut(s)	44, 71
AfeI	AGCGCT	1 cut(s)	271
AfiI	CCNNNNNNNGG	2 cut(s)	137, 685
AflIII	ACRYGT	2 cut(s)	297, 299
AgsI	TTSAA	4 cut(s)	170, 407, 605, 703
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	718
AlwI	GGATC	1 cut(s)	460
Aor51HI	AGCGCT	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	53, 523
ApoI	RAATTY	2 cut(s)	621, 630
AspLEI	GCGC	2 cut(s)	272, 316
AspS9I	GGNCC	2 cut(s)	460, 676
AsuC2I	CCSGG	1 cut(s)	680
AvaII	GGWCC	2 cut(s)	460, 676
BaeI	ACNNNNGTAYC	2 cut(s)	34, 67
BanII	GRGCYC	1 cut(s)	110
BbrPI	CACGTG	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	40, 535
BccI	CCATC	3 cut(s)	252, 443, 746
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	1 cut(s)	718
BfoI	RGCGCY	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	726
BisI	GCNGC	2 cut(s)	54, 524
BlsI	GCNGC	2 cut(s)	55, 525
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	2 cut(s)	460, 676
BmgT120I	GGNCC	2 cut(s)	460, 676
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	680
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	1 cut(s)	330
BmuI	ACTGGG	1 cut(s)	573
BplI	GAGNNNNNCTC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	715
BpuMI	CCSGG	1 cut(s)	680
BsaAI	YACGTR	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 685
Bse1I	ACTGG	3 cut(s)	196, 462, 568
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	137, 685
BseMII	CTCAG	3 cut(s)	132, 167, 713
BseNI	ACTGG	3 cut(s)	196, 462, 568
BseRI	GAGGAG	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	40, 535
BsgI	GTGCAG	2 cut(s)	369, 542
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	679
BslI	CCNNNNNNNGG	2 cut(s)	137, 685
BsmAI	GTCTC	1 cut(s)	718
Bsp1286I	GDGCHC	2 cut(s)	99, 110
Bsp143I	GATC	2 cut(s)	385, 452
BspACI	CCGC	1 cut(s)	742
BspCNI	CTCAG	3 cut(s)	131, 168, 714
BspLI	GGNNCC	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	726
BspPI	GGATC	1 cut(s)	460
BsrI	ACTGG	3 cut(s)	196, 462, 568
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	2 cut(s)	385, 452
BssT1I	CCWWGG	1 cut(s)	651
Bst4CI	ACNGT	1 cut(s)	641
Bst6I	CTCTTC	1 cut(s)	512
BstBAI	YACGTR	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	118, 176, 722
BstF5I	GGATG	1 cut(s)	738
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	2 cut(s)	272, 316
BstKTI	GATC	2 cut(s)	388, 455
BstMAI	GTCTC	1 cut(s)	718
BstMBI	GATC	2 cut(s)	385, 452
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 727
BstNSI	RCATGY	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	678
BstV1I	GCAGC	2 cut(s)	40, 535
BtsCI	GGATG	1 cut(s)	738
BtsIMutI	CAGTG	5 cut(s)	173, 189, 228, 455, 646
BveI	ACCTGC	1 cut(s)	726
Cac8I	GCNNGC	1 cut(s)	287
CfoI	GCGC	2 cut(s)	272, 316
Cfr13I	GGNCC	2 cut(s)	460, 676
Csp6I	GTAC	2 cut(s)	43, 70
CviAII	CATG	3 cut(s)	57, 160, 595
CviJI	RGCY	6 cut(s)	13, 108, 130, 195, 259, 526
CviKI_1	RGCY	6 cut(s)	13, 108, 130, 195, 259, 526
CviQI	GTAC	2 cut(s)	43, 70
DdeI	CTNAG	3 cut(s)	118, 176, 722
DpnI	GATC	2 cut(s)	387, 454
DpnII	GATC	2 cut(s)	385, 452
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	1 cut(s)	110
Eco47I	GGWCC	2 cut(s)	460, 676
Eco47III	AGCGCT	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	275
Eco72I	CACGTG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	3 cut(s)	60, 163, 598
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	3 cut(s)	56, 159, 594
Fnu4HI	GCNGC	2 cut(s)	54, 524
FokI	GGATG	1 cut(s)	725
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	54, 524
GlaI	GCGC	2 cut(s)	271, 315
GluI	GCNGC	2 cut(s)	54, 524
HaeII	RGCGCY	1 cut(s)	273
HapII	CCGG	1 cut(s)	679
HhaI	GCGC	2 cut(s)	272, 316
Hin1II	CATG	3 cut(s)	60, 163, 598
Hin6I	GCGC	2 cut(s)	270, 314
HinP1I	GCGC	2 cut(s)	270, 314
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	4 cut(s)	5, 17, 353, 699
HpaII	CCGG	1 cut(s)	679
Hpy188I	TCNGA	4 cut(s)	10, 255, 282, 364
Hpy188III	TCNNGA	3 cut(s)	404, 419, 710
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	641
HpyCH4IV	ACGT	2 cut(s)	299, 390
HpyCH4V	TGCA	7 cut(s)	56, 216, 350, 470, 523, 613, 730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 727
HpyF3I	CTNAG	3 cut(s)	118, 176, 722
HpySE526I	ACGT	2 cut(s)	299, 390
Hsp92II	CATG	3 cut(s)	60, 163, 598
HspAI	GCGC	2 cut(s)	270, 314
Kzo9I	GATC	2 cut(s)	385, 452
LmnI	GCTCC	3 cut(s)	113, 282, 577
Lsp1109I	GCAGC	2 cut(s)	40, 535
LweI	GCATC	1 cut(s)	330
MaeII	ACGT	2 cut(s)	299, 390
MaeIII	GTNAC	3 cut(s)	59, 538, 559
MalI	GATC	2 cut(s)	387, 454
MboI	GATC	2 cut(s)	385, 452
MboII	GAAGA	3 cut(s)	395, 499, 503
MhlI	GDGCHC	2 cut(s)	99, 110
MluCI	AATT	6 cut(s)	531, 544, 621, 630, 670, 703
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	4 cut(s)	171, 389, 515, 568
MseI	TTAA	2 cut(s)	102, 569
MslI	CAYNNNNRTG	2 cut(s)	516, 518
MspA1I	CMGCKG	1 cut(s)	744
MspI	CCGG	1 cut(s)	679
MspR9I	CCNGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	2 cut(s)	73, 727
NciI	CCSGG	1 cut(s)	680
NdeII	GATC	2 cut(s)	385, 452
NlaIII	CATG	3 cut(s)	60, 163, 598
NlaIV	GGNNCC	1 cut(s)	109
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	538
NspI	RCATGY	1 cut(s)	60
OliI	CACNNNNGTG	1 cut(s)	518
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	353, 699
PkrI	GCNGC	2 cut(s)	55, 525
PleI	GAGTC	1 cut(s)	11
PmaCI	CACGTG	1 cut(s)	300
PmlI	CACGTG	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	300
PspCI	CACGTG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	2 cut(s)	460, 676
RsaI	GTAC	2 cut(s)	44, 71
RsaNI	GTAC	2 cut(s)	43, 70
RseI	CAYNNNNRTG	2 cut(s)	516, 518
SaqAI	TTAA	2 cut(s)	102, 569
SatI	GCNGC	2 cut(s)	54, 524
Sau3AI	GATC	2 cut(s)	385, 452
Sau96I	GGNCC	2 cut(s)	460, 676
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	2 cut(s)	99, 110
SetI	ASST	8 cut(s)	44, 241, 261, 302, 393, 465, 657, 720
SfaNI	GCATC	1 cut(s)	330
SinI	GGWCC	2 cut(s)	460, 676
SmiMI	CAYNNNNRTG	2 cut(s)	516, 518
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	6 cut(s)	531, 544, 621, 630, 670, 703
SsiI	CCGC	1 cut(s)	742
StyD4I	CCNGG	1 cut(s)	678
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	1 cut(s)	641
TaiI	ACGT	2 cut(s)	302, 393
TaqI	TCGA	1 cut(s)	93
TasI	AATT	6 cut(s)	531, 544, 621, 630, 670, 703
TatI	WGTACW	1 cut(s)	69
TfiI	GAWTC	2 cut(s)	353, 699
Tru1I	TTAA	2 cut(s)	102, 569
Tru9I	TTAA	2 cut(s)	102, 569
TscAI	CASTG	5 cut(s)	180, 196, 235, 462, 646
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	2 cut(s)	53, 523
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	4 cut(s)	113, 148, 504, 570
TspRI	CASTG	5 cut(s)	180, 196, 235, 462, 646
VpaK11BI	GGWCC	2 cut(s)	460, 676
XapI	RAATTY	2 cut(s)	621, 630
XceI	RCATGY	1 cut(s)	60
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.