Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002308

Physical Location & Seq

Genomic Coordinates Forward (+)

2673192 .. 2677479

Gene Structure 4288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04651.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGACTCCGACGACTCGCAGAAAAGTGAGAAAACCCCAACAGCCAGGCACACATGTCCTGCTTGTTACAAACAATATAAGAAGAAAGAACATTTCATTGAGCATATGAAGGTTGCCTTCCACTCAGCTCATGATCCTAGATGTGGAGTGTGTAGAAAGCACTGCAAATCATTCGAGTCTTTGAGGGAACATCTTACTGGTCCAGTGGCAAAAGAAAATTGCATGAAGATTTTCACTGAACAAGGATGTGATCTATGTTTGAAGCTCTTTGATAACCCTGCTTCTCTTAACCAGCATAGAGAAGTGTGTCTCCTATCTGCACCTGCTCCTATAGGAACAGTGCCTAATGCAGAATCTCAGTCTTATATGAATTTCTGTGGAGAAAACCACTTCGATAACCGCCCCGAAGCAATTGCAATGGATTGTGAAATGGTTGGCGGTGGAAGTGATGGATCACTGGACCTGTGTGCAAGGGTGTGCCTAACTGATGAAGACGAGAAAATCCTATTCCACACCTATGTGCGGCCTCAACTTCCTATCACTAATTACAGATACGAAATTACTGGGTTAACAGAAGATCATCTTACAAATGCAATGCCACTCAAAGATGTGCACGATAAGATCTTGGAAATTTTGTACAATGGAGAGTCCATTGGGAGATCAAGGTTGGATGGGGGAAAGGCCAAGCTTCTTGTGGGGCATGATTTGGATCATGATTTGGATTGCATGGCAATGTATTATCCTCAGCACCTGCTGAGGGATACTGCAAAGTACCAACCACTGATGAAAACAAATTTTGTCAGTCACTCACTTAAGTATCTCACCAAAACATATCTGGGGTATGATATCCAGTCTGGTATGCATGATCCTTATGAAGATTGTGTGGCTGTAATGAGACTGTACAAGAGATTCCGAGCCCTAGATCATCAGATAGAAGGCATTGTACTTGCTACGAAGTATTCAAACGACATCCATGTGAATTTCGATTCTCTGACAACTGAAAAGCTTGAGGAGATGACACCTGATGAGCTTTATGAATTGTCAAAACCAAACTACGAGTGCTGGTGTCTGGATACAAGGCAAGCACTAACATTAGGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

368

Amino Acids

41.95

Weight (kDa)

5.73

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	138 - 301	8.1e-12	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100
fragaria_vesca	FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651
malus_domestica	MD14G1090000.v1.1 MD14G1090200.v1.1
prunus_persica	Prupe.1G564900_v2.0.a1 Prupe.1G565600_v2.0.a1 Prupe.8G245200_v2.0.a1
pyrus_communis	pycom14g08070 pycom14g08080
rosa_chinensis	RchiOBHm_Chr6g0291701
rosa_laevigata	RLG00000012097
rosa_multiflora	Rmu_sc0002226.1_g000018
rosa_roxburghii	Rroxscaffold_7G00175840
rosa_rugosa	Rorug06G0220700 Rorug06G0220900
rosa_samantha	Rh6AG333500 Rh6BG340300 Rh6BG340500 Rh6CG346700 Rh6DG333800 Rh6DG333900
rosa_wichuraiana	Rw6G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	331, 759
Acc36I	ACCTGC	2 cut(s)	331, 759
AciI	CCGC	3 cut(s)	400, 438, 523
AclWI	GGATC	4 cut(s)	128, 460, 717, 860
AcsI	RAATTY	4 cut(s)	370, 630, 793, 979
AfaI	GTAC	4 cut(s)	638, 773, 902, 945
AfiI	CCNNNNNNNGG	3 cut(s)	143, 522, 757
AflII	CTTAAG	1 cut(s)	812
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	262, 963
AjnI	CCWGG	1 cut(s)	44
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	5 cut(s)	128, 265, 688, 1006, 1030
AluI	AGCT	5 cut(s)	128, 265, 688, 1006, 1030
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	2 cut(s)	314, 889
Alw44I	GTGCAC	1 cut(s)	611
AlwI	GGATC	4 cut(s)	128, 460, 717, 860
AlwNI	CAGNNNCTG	1 cut(s)	751
AoxI	GGCC	2 cut(s)	524, 681
ApaLI	GTGCAC	1 cut(s)	611
ApoI	RAATTY	4 cut(s)	370, 630, 793, 979
Asp700I	GAANNNNTTC	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	200, 460
AsuHPI	GGTGA	1 cut(s)	814
AvaII	GGWCC	2 cut(s)	200, 460
BaeGI	GKGCMC	1 cut(s)	615
BaeI	ACNNNNGTAYC	2 cut(s)	800, 833
BanII	GRGCYC	1 cut(s)	919
BarI	GAAGNNNNNNTAC	2 cut(s)	927, 959
BbsI	GAAGAC	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	615
BbvCI	CCTCAGC	2 cut(s)	744, 755
BccI	CCATC	2 cut(s)	443, 665
BcgI	CGANNNNNNTGC	4 cut(s)	154, 188, 395, 429
BciT130I	CCWGG	1 cut(s)	46
BciVI	GTATCC	2 cut(s)	754, 1066
BcoDI	GTCTC	2 cut(s)	314, 889
BfaI	CTAG	2 cut(s)	138, 920
BfmI	CTRYAG	1 cut(s)	330
BfrI	CTTAAG	1 cut(s)	812
BfuAI	ACCTGC	2 cut(s)	331, 759
BfuI	GTATCC	2 cut(s)	754, 1066
BglII	AGATCT	1 cut(s)	621
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	2 cut(s)	200, 460
BmgT120I	GGNCC	2 cut(s)	200, 460
BmrFI	CCNGG	1 cut(s)	46
BmrI	ACTGGG	1 cut(s)	573
BmuI	ACTGGG	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	498
Bpu10I	CCTNAGC	2 cut(s)	744, 755
BpuEI	CTTGAG	1 cut(s)	1028
BsaBI	GATNNNNATC	1 cut(s)	708
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 522, 757
Bse1I	ACTGG	5 cut(s)	202, 203, 462, 568, 850
Bse3DI	GCAATG	3 cut(s)	423, 600, 738
Bse8I	GATNNNNATC	1 cut(s)	708
BseBI	CCWGG	1 cut(s)	46
BseGI	GGATG	3 cut(s)	251, 676, 969
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	3 cut(s)	143, 522, 757
BseMI	GCAATG	3 cut(s)	423, 600, 738
BseMII	CTCAG	4 cut(s)	138, 371, 746, 758
BseNI	ACTGG	5 cut(s)	202, 203, 462, 568, 850
BseRI	GAGGAG	1 cut(s)	1025
BseSI	GKGCMC	1 cut(s)	615
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	526, 683
BsiHKAI	GWGCWC	1 cut(s)	615
BslI	CCNNNNNNNGG	3 cut(s)	143, 522, 757
BsmAI	GTCTC	2 cut(s)	314, 889
BsnI	GGCC	2 cut(s)	526, 683
Bsp1286I	GDGCHC	2 cut(s)	615, 919
Bsp1407I	TGTACA	2 cut(s)	636, 900
Bsp143I	GATC	9 cut(s)	133, 250, 452, 577, 621, 659, 709, 865, 922
BspACI	CCGC	3 cut(s)	400, 438, 523
BspANI	GGCC	2 cut(s)	526, 683
BspCNI	CTCAG	4 cut(s)	137, 370, 747, 757
BspHI	TCATGA	2 cut(s)	130, 712
BspMI	ACCTGC	2 cut(s)	331, 759
BspPI	GGATC	4 cut(s)	128, 460, 717, 860
BspTI	CTTAAG	1 cut(s)	812
BsrDI	GCAATG	3 cut(s)	423, 600, 738
BsrGI	TGTACA	2 cut(s)	636, 900
BsrI	ACTGG	5 cut(s)	202, 203, 462, 568, 850
BssMI	GATC	9 cut(s)	133, 250, 452, 577, 621, 659, 709, 865, 922
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	340, 900
BstAFI	CTTAAG	1 cut(s)	812
BstAUI	TGTACA	2 cut(s)	636, 900
BstC8I	GCNNGC	1 cut(s)	1083
BstDEI	CTNAG	4 cut(s)	124, 357, 744, 755
BstF5I	GGATG	3 cut(s)	251, 676, 969
BstKTI	GATC	9 cut(s)	136, 253, 455, 580, 624, 662, 712, 868, 925
BstMAI	GTCTC	2 cut(s)	314, 889
BstMBI	GATC	9 cut(s)	133, 250, 452, 577, 621, 659, 709, 865, 922
BstNI	CCWGG	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	330
BstSLI	GKGCMC	1 cut(s)	615
BstV2I	GAAGAC	1 cut(s)	498
BstX2I	RGATCY	1 cut(s)	621
BstYI	RGATCY	1 cut(s)	621
BsuI	GTATCC	2 cut(s)	754, 1066
BsuRI	GGCC	2 cut(s)	526, 683
BtsCI	GGATG	3 cut(s)	251, 676, 969
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	6 cut(s)	160, 210, 234, 345, 455, 779
BveI	ACCTGC	2 cut(s)	331, 759
Cac8I	GCNNGC	1 cut(s)	1083
CaiI	CAGNNNCTG	1 cut(s)	751
CciI	TCATGA	2 cut(s)	130, 712
Cfr13I	GGNCC	2 cut(s)	200, 460
Csp6I	GTAC	4 cut(s)	637, 772, 901, 944
CviAII	CATG	8 cut(s)	54, 131, 223, 701, 713, 727, 863, 974
CviQI	GTAC	4 cut(s)	637, 772, 901, 944
DdeI	CTNAG	4 cut(s)	124, 357, 744, 755
DpnI	GATC	9 cut(s)	135, 252, 454, 579, 623, 661, 711, 867, 924
DpnII	GATC	9 cut(s)	133, 250, 452, 577, 621, 659, 709, 865, 922
Eco24I	GRGCYC	1 cut(s)	919
Eco32I	GATATC	1 cut(s)	847
Eco47I	GGWCC	2 cut(s)	200, 460
EcoRII	CCWGG	1 cut(s)	44
EcoRV	GATATC	1 cut(s)	847
EcoT22I	ATGCAT	1 cut(s)	864
EcoT38I	GRGCYC	1 cut(s)	919
FaeI	CATG	8 cut(s)	57, 134, 226, 704, 716, 730, 866, 977
FalI	AAGNNNNNCTT	4 cut(s)	101, 133, 567, 599
FatI	CATG	8 cut(s)	53, 130, 222, 700, 712, 726, 862, 973
FauNDI	CATATG	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	3 cut(s)	258, 683, 956
FriOI	GRGCYC	1 cut(s)	919
Fsp4HI	GCNGC	1 cut(s)	524
FspBI	CTAG	2 cut(s)	138, 920
GluI	GCNGC	1 cut(s)	524
HaeIII	GGCC	2 cut(s)	526, 683
Hin1II	CATG	8 cut(s)	57, 134, 226, 704, 716, 730, 866, 977
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HindIII	AAGCTT	2 cut(s)	686, 1004
HinfI	GANTC	7 cut(s)	5, 14, 176, 353, 647, 909, 986
HpaI	GTTAAC	1 cut(s)	570
HphI	GGTGA	1 cut(s)	814
Hpy166II	GTNNAC	2 cut(s)	570, 613
Hpy188I	TCNGA	4 cut(s)	10, 914, 930, 993
Hpy188III	TCNNGA	3 cut(s)	131, 713, 1070
Hpy8I	GTNNAC	2 cut(s)	570, 613
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	103, 127, 929
HpyCH4III	ACNGT	2 cut(s)	340, 900
HpyF3I	CTNAG	4 cut(s)	124, 357, 744, 755
Hsp92II	CATG	8 cut(s)	57, 134, 226, 704, 716, 730, 866, 977
KspAI	GTTAAC	1 cut(s)	570
Kzo9I	GATC	9 cut(s)	133, 250, 452, 577, 621, 659, 709, 865, 922
LmnI	GCTCC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	138, 920
MaeIII	GTNAC	2 cut(s)	65, 803
MalI	GATC	9 cut(s)	135, 252, 454, 579, 623, 661, 711, 867, 924
MboI	GATC	9 cut(s)	133, 250, 452, 577, 621, 659, 709, 865, 922
MboII	GAAGA	5 cut(s)	94, 238, 503, 587, 887
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	621
MhlI	GDGCHC	2 cut(s)	615, 919
MluCI	AATT	9 cut(s)	217, 370, 411, 544, 558, 630, 793, 979, 1037
MlyI	GAGTC	3 cut(s)	8, 185, 656
MmeI	TCCRAC	2 cut(s)	33, 648
MnlI	CCTC	5 cut(s)	177, 537, 750, 753, 1003
Mph1103I	ATGCAT	1 cut(s)	864
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	3 cut(s)	288, 569, 813
MslI	CAYNNNNRTG	4 cut(s)	516, 518, 731, 974
MspCI	CTTAAG	1 cut(s)	812
MspR9I	CCNGG	1 cut(s)	46
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	46
NdeI	CATATG	1 cut(s)	105
NdeII	GATC	9 cut(s)	133, 250, 452, 577, 621, 659, 709, 865, 922
NlaIII	CATG	8 cut(s)	57, 134, 226, 704, 716, 730, 866, 977
NmuCI	GTSAC	1 cut(s)	803
NsiI	ATGCAT	1 cut(s)	864
NspI	RCATGY	1 cut(s)	57
OliI	CACNNNNGTG	1 cut(s)	518
PagI	TCATGA	2 cut(s)	130, 712
PaqCI	CACCTGC	2 cut(s)	331, 759
PciI	ACATGT	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	3 cut(s)	353, 909, 986
PkrI	GCNGC	1 cut(s)	525
PleI	GAGTC	3 cut(s)	8, 184, 655
PpsI	GAGTC	3 cut(s)	8, 184, 655
PscI	ACATGT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspPI	GGNCC	2 cut(s)	200, 460
PstNI	CAGNNNCTG	1 cut(s)	751
PsuI	RGATCY	1 cut(s)	621
RsaI	GTAC	4 cut(s)	638, 773, 902, 945
RsaNI	GTAC	4 cut(s)	637, 772, 901, 944
RseI	CAYNNNNRTG	4 cut(s)	516, 518, 731, 974
SaqAI	TTAA	3 cut(s)	288, 569, 813
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	9 cut(s)	133, 250, 452, 577, 621, 659, 709, 865, 922
Sau96I	GGNCC	2 cut(s)	200, 460
SchI	GAGTC	3 cut(s)	8, 185, 656
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	2 cut(s)	615, 919
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	200, 460
SmiMI	CAYNNNNRTG	4 cut(s)	516, 518, 731, 974
SmlI	CTYRAG	2 cut(s)	812, 1007
SmoI	CTYRAG	2 cut(s)	812, 1007
Sse9I	AATT	9 cut(s)	217, 370, 411, 544, 558, 630, 793, 979, 1037
SsiI	CCGC	3 cut(s)	400, 438, 523
SspMI	CTAG	2 cut(s)	138, 920
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	340, 900
TaqI	TCGA	3 cut(s)	174, 393, 984
TasI	AATT	9 cut(s)	217, 370, 411, 544, 558, 630, 793, 979, 1037
TatI	WGTACW	3 cut(s)	636, 900, 943
TauI	GCSGC	1 cut(s)	526
TfiI	GAWTC	3 cut(s)	353, 909, 986
Tru1I	TTAA	3 cut(s)	288, 569, 813
Tru9I	TTAA	3 cut(s)	288, 569, 813
TscAI	CASTG	6 cut(s)	167, 210, 241, 345, 462, 786
TseFI	GTSAC	1 cut(s)	803
Tsp45I	GTSAC	1 cut(s)	803
TspDTI	ATGAA	8 cut(s)	85, 122, 239, 383, 504, 800, 888, 1050
TspRI	CASTG	6 cut(s)	167, 210, 241, 345, 462, 786
Vha464I	CTTAAG	1 cut(s)	812
VneI	GTGCAC	1 cut(s)	611
VpaK11BI	GGWCC	2 cut(s)	200, 460
XapI	RAATTY	4 cut(s)	370, 630, 793, 979
XceI	RCATGY	1 cut(s)	57
XcmI	CCANNNNNNNNNTGG	2 cut(s)	691, 832
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	2 cut(s)	138, 920
Zsp2I	ATGCAT	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.