Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002308

Physical Location & Seq

Genomic Coordinates Reverse (-)

53466444 .. 53470056

Gene Structure 3613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG333500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCAATGTATGAATTTGTTTGACTCTATTGAAATTTTTGACCCATCGGCTTACAGGCACAAATGTCCTGCCTGTTACAAGCAATATAAGAAGAAAGAACATCTCATTGAGCACATGAAGGTTGCTTTCCACTCAGCTCATGATCCTAGTTGTGGAGTGTGTAGAAAGCACTGCAAATCTTTTGAGTCATTGAGGGAACATCTTACTGGTCCATTGGCAAAAGCAAGTTGCATGAAAATTTTCTCCGAACAAGGGTGTGATTTATGTTTGAAGCTCTTTGATAGCCCTGCTTCTCTTAGCGAGCATAGAGAAATGTGTCTCCTATCTGCACCTGCTCCTATTGGAACAGTGATAATTGCTTGTGCAGAATCTCAATCTTATTTGAACTTGTGTGGTGAAAACCACTTCAATAACCGTCCAGAAGCAATTGCTATGGATTGTGAAATGGTTGGCGGTAGAAGTGATGGATCACTGGACCTGTGTGCAAGGGTGTGCCTGACAGATGAAGACGAGAATATCCTGTTCCACACCTATGTGCGGCCTCAAATTTCTATCACGAATTACAGATATGAAATTACTGGGTTAACAGAAGATCATCTTAGAAATGCCATGCCACTCAAAGAAGTGCACGACAAAATCTTGAAAGTTTTGTACAATGGAGAGTCTATTGGGAGATCAAGGTTGGATGGGGAAAAGGCCAAGCTTCTTGTGGGGCATGATTTGGAGCATGATTTAGATTGCATGGGAATGTATTATCCTGAGCACCTGCTGAGGGATACTGCAAAGTACCATCCACTGATGAAAACAAATCTAGTCAGTCACTCACTTAAGTATCTCACCAGAACATATCTGGGGTATGATATCCAGTCTGGTATGCATGATCCCTATGAAGATTGTGTGGCTGTAATGAGACTGTACAAGAGATTTCGAGCCCTAGATCATCAGACAGAAGGCATTGTTGCATCCCTTGCTACAAAGTATTCAAACGACATCCATGGGAATTTTGATTCTTGGACAACTGAAAAACTTGAGAAGATGACACCTGATGAGCTTTATGAATTGTCAAAACCAAACTACAAGTGCTGGTGTCTGGATAGAAGGCAAGCACTGCAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

372

Amino Acids

42.66

Weight (kDa)

6.2

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	143 - 306	3.5e-12	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100 AT2G48100
fragaria_vesca	FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651 FvH4_3g04651
malus_domestica	MD14G1090000.v1.1 MD14G1090200.v1.1
prunus_persica	Prupe.1G564900_v2.0.a1 Prupe.1G565600_v2.0.a1 Prupe.8G245200_v2.0.a1
pyrus_communis	pycom14g08070 pycom14g08080
rosa_chinensis	RchiOBHm_Chr6g0291701
rosa_laevigata	RLG00000012097
rosa_multiflora	Rmu_sc0002226.1_g000018
rosa_roxburghii	Rroxscaffold_7G00175840
rosa_rugosa	Rorug06G0220700 Rorug06G0220900
rosa_samantha	Rh6AG333500 Rh6BG340300 Rh6BG340500 Rh6CG346700 Rh6DG333800 Rh6DG333900
rosa_wichuraiana	Rw6G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	340, 774
Acc36I	ACCTGC	2 cut(s)	340, 774
AciI	CCGC	2 cut(s)	453, 538
AclWI	GGATC	3 cut(s)	137, 475, 875
AcsI	RAATTY	5 cut(s)	13, 33, 237, 546, 1000
AfaI	GTAC	3 cut(s)	653, 788, 917
AfiI	CCNNNNNNNGG	4 cut(s)	152, 252, 537, 772
AflII	CTTAAG	1 cut(s)	827
AgsI	TTSAA	6 cut(s)	32, 271, 385, 409, 643, 984
AleI	CACNNNNGTG	1 cut(s)	533
AluBI	AGCT	4 cut(s)	137, 274, 703, 1051
AluI	AGCT	4 cut(s)	137, 274, 703, 1051
Alw21I	GWGCWC	3 cut(s)	114, 630, 765
Alw26I	GTCTC	2 cut(s)	323, 904
Alw44I	GTGCAC	1 cut(s)	626
AlwI	GGATC	3 cut(s)	137, 475, 875
AoxI	GGCC	2 cut(s)	539, 696
ApaLI	GTGCAC	1 cut(s)	626
ApoI	RAATTY	5 cut(s)	13, 33, 237, 546, 1000
Asp700I	GAANNNNTTC	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	209, 475
AsuHPI	GGTGA	2 cut(s)	407, 829
AvaII	GGWCC	2 cut(s)	209, 475
BaeGI	GKGCMC	1 cut(s)	630
BaeI	ACNNNNGTAYC	2 cut(s)	815, 848
BanII	GRGCYC	1 cut(s)	934
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	3 cut(s)	114, 630, 765
BbvCI	CCTCAGC	1 cut(s)	770
BccI	CCATC	4 cut(s)	52, 458, 680, 798
BciVI	GTATCC	1 cut(s)	769
BcoDI	GTCTC	2 cut(s)	323, 904
BfaI	CTAG	3 cut(s)	147, 812, 935
BfrI	CTTAAG	1 cut(s)	827
BfuAI	ACCTGC	2 cut(s)	340, 774
BfuI	GTATCC	1 cut(s)	769
BisI	GCNGC	1 cut(s)	539
BlsI	GCNGC	1 cut(s)	540
Bme18I	GGWCC	2 cut(s)	209, 475
BmgT120I	GGNCC	2 cut(s)	209, 475
BmrI	ACTGGG	1 cut(s)	588
BmsI	GCATC	1 cut(s)	971
BmuI	ACTGGG	1 cut(s)	588
BpiI	GAAGAC	1 cut(s)	513
Bpu10I	CCTNAGC	2 cut(s)	759, 770
BpuEI	CTTGAG	1 cut(s)	1049
BsaJI	CCNNGG	1 cut(s)	994
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 252, 537, 772
Bse1I	ACTGG	4 cut(s)	211, 477, 583, 865
Bse3DI	GCAATG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	994
BseGI	GGATG	4 cut(s)	691, 790, 962, 990
BseLI	CCNNNNNNNGG	4 cut(s)	152, 252, 537, 772
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	3 cut(s)	147, 750, 761
BseNI	ACTGG	4 cut(s)	211, 477, 583, 865
BseSI	GKGCMC	1 cut(s)	630
BsgI	GTGCAG	2 cut(s)	312, 384
BshFI	GGCC	2 cut(s)	541, 698
BsiHKAI	GWGCWC	3 cut(s)	114, 630, 765
BslI	CCNNNNNNNGG	4 cut(s)	152, 252, 537, 772
BsmAI	GTCTC	2 cut(s)	323, 904
BsnI	GGCC	2 cut(s)	541, 698
Bsp1286I	GDGCHC	4 cut(s)	114, 630, 765, 934
Bsp1407I	TGTACA	2 cut(s)	651, 915
Bsp143I	GATC	6 cut(s)	142, 467, 592, 674, 880, 937
Bsp19I	CCATGG	1 cut(s)	994
BspACI	CCGC	2 cut(s)	453, 538
BspANI	GGCC	2 cut(s)	541, 698
BspCNI	CTCAG	3 cut(s)	146, 751, 762
BspHI	TCATGA	1 cut(s)	139
BspMI	ACCTGC	2 cut(s)	340, 774
BspPI	GGATC	3 cut(s)	137, 475, 875
BspTI	CTTAAG	1 cut(s)	827
BsrDI	GCAATG	1 cut(s)	11
BsrGI	TGTACA	2 cut(s)	651, 915
BsrI	ACTGG	4 cut(s)	211, 477, 583, 865
BssECI	CCNNGG	1 cut(s)	994
BssMI	GATC	6 cut(s)	142, 467, 592, 674, 880, 937
BssT1I	CCWWGG	1 cut(s)	994
Bst4CI	ACNGT	3 cut(s)	349, 416, 915
BstAFI	CTTAAG	1 cut(s)	827
BstAPI	GCANNNNNTGC	2 cut(s)	968, 1108
BstAUI	TGTACA	2 cut(s)	651, 915
BstC8I	GCNNGC	2 cut(s)	302, 1104
BstDEI	CTNAG	6 cut(s)	133, 296, 599, 759, 770, 1116
BstDSI	CCRYGG	1 cut(s)	994
BstF5I	GGATG	4 cut(s)	691, 790, 962, 990
BstKTI	GATC	6 cut(s)	145, 470, 595, 677, 883, 940
BstMAI	GTCTC	2 cut(s)	323, 904
BstMBI	GATC	6 cut(s)	142, 467, 592, 674, 880, 937
BstMWI	GCNNNNNNNGC	2 cut(s)	968, 1108
BstSLI	GKGCMC	1 cut(s)	630
BstV2I	GAAGAC	1 cut(s)	513
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	2 cut(s)	541, 698
BtgI	CCRYGG	1 cut(s)	994
BtsCI	GGATG	4 cut(s)	691, 790, 962, 990
BtsI	GCAGTG	2 cut(s)	169, 1106
BtsIMutI	CAGTG	5 cut(s)	169, 354, 470, 794, 1106
BveI	ACCTGC	2 cut(s)	340, 774
Cac8I	GCNNGC	2 cut(s)	302, 1104
CciI	TCATGA	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	209, 475
Csp6I	GTAC	3 cut(s)	652, 787, 916
CviAII	CATG	9 cut(s)	115, 140, 232, 610, 716, 728, 742, 878, 995
CviQI	GTAC	3 cut(s)	652, 787, 916
DdeI	CTNAG	6 cut(s)	133, 296, 599, 759, 770, 1116
DpnI	GATC	6 cut(s)	144, 469, 594, 676, 882, 939
DpnII	GATC	6 cut(s)	142, 467, 592, 674, 880, 937
Eco130I	CCWWGG	1 cut(s)	994
Eco24I	GRGCYC	1 cut(s)	934
Eco32I	GATATC	1 cut(s)	862
Eco47I	GGWCC	2 cut(s)	209, 475
EcoRV	GATATC	1 cut(s)	862
EcoT14I	CCWWGG	1 cut(s)	994
EcoT22I	ATGCAT	1 cut(s)	879
EcoT38I	GRGCYC	1 cut(s)	934
ErhI	CCWWGG	1 cut(s)	994
FaeI	CATG	9 cut(s)	118, 143, 235, 613, 719, 731, 745, 881, 998
FalI	AAGNNNNNCTT	2 cut(s)	582, 614
FatI	CATG	9 cut(s)	114, 139, 231, 609, 715, 727, 741, 877, 994
Fnu4HI	GCNGC	1 cut(s)	539
FokI	GGATG	4 cut(s)	698, 777, 949, 977
FriOI	GRGCYC	1 cut(s)	934
Fsp4HI	GCNGC	1 cut(s)	539
FspBI	CTAG	3 cut(s)	147, 812, 935
GluI	GCNGC	1 cut(s)	539
HaeIII	GGCC	2 cut(s)	541, 698
Hin1II	CATG	9 cut(s)	118, 143, 235, 613, 719, 731, 745, 881, 998
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	5 cut(s)	23, 185, 368, 662, 1007
HpaI	GTTAAC	1 cut(s)	585
HphI	GGTGA	2 cut(s)	407, 829
Hpy166II	GTNNAC	2 cut(s)	585, 628
Hpy188I	TCNGA	2 cut(s)	247, 945
Hpy188III	TCNNGA	6 cut(s)	140, 419, 556, 640, 758, 1091
Hpy8I	GTNNAC	2 cut(s)	585, 628
HpyAV	CCTTC	3 cut(s)	112, 944, 1092
HpyCH4III	ACNGT	3 cut(s)	349, 416, 915
HpyF10VI	GCNNNNNNNGC	2 cut(s)	968, 1108
HpyF3I	CTNAG	6 cut(s)	133, 296, 599, 759, 770, 1116
Hsp92II	CATG	9 cut(s)	118, 143, 235, 613, 719, 731, 745, 881, 998
KspAI	GTTAAC	1 cut(s)	585
Kzo9I	GATC	6 cut(s)	142, 467, 592, 674, 880, 937
LmnI	GCTCC	2 cut(s)	340, 724
LweI	GCATC	1 cut(s)	971
MaeI	CTAG	3 cut(s)	147, 812, 935
MaeIII	GTNAC	2 cut(s)	74, 818
MalI	GATC	6 cut(s)	144, 469, 594, 676, 882, 939
MboI	GATC	6 cut(s)	142, 467, 592, 674, 880, 937
MboII	GAAGA	5 cut(s)	103, 518, 602, 902, 1045
MfeI	CAATTG	1 cut(s)	426
MhlI	GDGCHC	4 cut(s)	114, 630, 765, 934
MlyI	GAGTC	3 cut(s)	17, 194, 671
MmeI	TCCRAC	1 cut(s)	663
MnlI	CCTC	3 cut(s)	186, 552, 765
Mph1103I	ATGCAT	1 cut(s)	879
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	2 cut(s)	584, 828
MslI	CAYNNNNRTG	3 cut(s)	531, 533, 746
MspCI	CTTAAG	1 cut(s)	827
MunI	CAATTG	1 cut(s)	426
MwoI	GCNNNNNNNGC	2 cut(s)	968, 1108
NcoI	CCATGG	1 cut(s)	994
NdeII	GATC	6 cut(s)	142, 467, 592, 674, 880, 937
NlaIII	CATG	9 cut(s)	118, 143, 235, 613, 719, 731, 745, 881, 998
NmuCI	GTSAC	1 cut(s)	818
NsiI	ATGCAT	1 cut(s)	879
OliI	CACNNNNGTG	1 cut(s)	533
PagI	TCATGA	1 cut(s)	139
PaqCI	CACCTGC	2 cut(s)	340, 774
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	368, 1007
PkrI	GCNGC	1 cut(s)	540
PleI	GAGTC	3 cut(s)	17, 193, 670
PpsI	GAGTC	3 cut(s)	17, 193, 670
PspPI	GGNCC	2 cut(s)	209, 475
RsaI	GTAC	3 cut(s)	653, 788, 917
RsaNI	GTAC	3 cut(s)	652, 787, 916
RseI	CAYNNNNRTG	3 cut(s)	531, 533, 746
SaqAI	TTAA	2 cut(s)	584, 828
SatI	GCNGC	1 cut(s)	539
Sau3AI	GATC	6 cut(s)	142, 467, 592, 674, 880, 937
Sau96I	GGNCC	2 cut(s)	209, 475
SchI	GAGTC	3 cut(s)	17, 194, 671
SduI	GDGCHC	4 cut(s)	114, 630, 765, 934
SfaNI	GCATC	1 cut(s)	971
SinI	GGWCC	2 cut(s)	209, 475
SmiMI	CAYNNNNRTG	3 cut(s)	531, 533, 746
SmlI	CTYRAG	2 cut(s)	827, 1028
SmoI	CTYRAG	2 cut(s)	827, 1028
SsiI	CCGC	2 cut(s)	453, 538
SspMI	CTAG	3 cut(s)	147, 812, 935
StyI	CCWWGG	1 cut(s)	994
TaaI	ACNGT	3 cut(s)	349, 416, 915
TaqI	TCGA	1 cut(s)	928
TatI	WGTACW	2 cut(s)	651, 915
TauI	GCSGC	1 cut(s)	541
TfiI	GAWTC	2 cut(s)	368, 1007
Tru1I	TTAA	2 cut(s)	584, 828
Tru9I	TTAA	2 cut(s)	584, 828
TscAI	CASTG	5 cut(s)	176, 354, 477, 801, 1113
TseFI	GTSAC	1 cut(s)	818
Tsp45I	GTSAC	1 cut(s)	818
TspDTI	ATGAA	8 cut(s)	26, 131, 248, 519, 585, 815, 903, 1071
TspRI	CASTG	5 cut(s)	176, 354, 477, 801, 1113
Vha464I	CTTAAG	1 cut(s)	827
VneI	GTGCAC	1 cut(s)	626
VpaK11BI	GGWCC	2 cut(s)	209, 475
XapI	RAATTY	5 cut(s)	13, 33, 237, 546, 1000
XcmI	CCANNNNNNNNNTGG	2 cut(s)	706, 847
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	3 cut(s)	147, 812, 935
Zsp2I	ATGCAT	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.