Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007745

Physical Location & Seq

Genomic Coordinates Forward (+)

19681637 .. 19682406

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G48121.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGACGTGAGAAGCTTGACCGAAGAAGCGGCTGGAATATGTAGGACAGAAGATACAGAGGAGGTTCATGATCGGTATGAACATAACCGGAGACTTAGGAATCCGGCGACAACCGCTGTTCAACAAGCCATTCACGGCCTCGCCTACACCATCTACGGGAAACCCGATGTTCGGCGGCTCATGTTTGAGGTTTTCGACTTCGAACAAATCCAACCTAAAGCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0022613 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

75

Amino Acids

8.73

Weight (kDa)

5.52

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48121 AT2G48121 AT4G37510
fragaria_vesca	FvH4_1g17270 FvH4_1g17270
malus_domestica	MD15G1293700.v1.1
prunus_persica	Prupe.6G223800_v2.0.a1
pyrus_communis	pycom15g25680
rosa_chinensis	RchiOBHm_Chr2g0107461
rosa_laevigata	RLG00000017580
rosa_multiflora	Rmu_sc0005152.1_g000009 Rmu_sc0025013.1_g000002 Rmu_sc0039159.1_g000001 Rmu_sc0040873.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136320
rosa_rugosa	Rorug02G0143700 Rorug02G0143800
rosa_samantha	Rh2AG193900 Rh2AG299800 Rh2BG206100 Rh2CG199100 Rh2DG201100 Rh2DG323800
rosa_wichuraiana	Rw2G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	29, 114, 175
AfiI	CCNNNNNNNGG	2 cut(s)	156, 171
AgsI	TTSAA	1 cut(s)	122
AjiI	CACGTC	1 cut(s)	7
AluBI	AGCT	2 cut(s)	15, 221
AluI	AGCT	2 cut(s)	15, 221
Alw26I	GTCTC	1 cut(s)	85
AoxI	GGCC	1 cut(s)	136
AsuII	TTCGAA	1 cut(s)	201
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	30, 176
BlsI	GCNGC	2 cut(s)	31, 177
BmgBI	CACGTC	1 cut(s)	7
Bpu14I	TTCGAA	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 171
BseLI	CCNNNNNNNGG	2 cut(s)	156, 171
BseRI	GAGGAG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	88, 104
BslI	CCNNNNNNNGG	2 cut(s)	156, 171
BsmAI	GTCTC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	138
Bsp119I	TTCGAA	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	3 cut(s)	29, 114, 175
BspANI	GGCC	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	67
BspT104I	TTCGAA	1 cut(s)	201
BssMI	GATC	1 cut(s)	70
BstBI	TTCGAA	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	95
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	7
CciI	TCATGA	1 cut(s)	67
CviAII	CATG	2 cut(s)	68, 181
CviJI	RGCY	6 cut(s)	15, 32, 128, 138, 178, 221
CviKI_1	RGCY	6 cut(s)	15, 32, 128, 138, 178, 221
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
FaeI	CATG	2 cut(s)	71, 184
FaiI	YATR	5 cut(s)	40, 69, 78, 84, 182
FatI	CATG	2 cut(s)	67, 180
Fnu4HI	GCNGC	2 cut(s)	30, 176
Fsp4HI	GCNGC	2 cut(s)	30, 176
GluI	GCNGC	2 cut(s)	30, 176
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	2 cut(s)	88, 104
Hin1II	CATG	2 cut(s)	71, 184
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	1 cut(s)	100
HpaII	CCGG	2 cut(s)	88, 104
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	71, 184
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	3 cut(s)	18, 101, 117
MaeII	ACGT	1 cut(s)	6
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	2 cut(s)	35, 62
MnlI	CCTC	4 cut(s)	52, 55, 149, 181
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	2 cut(s)	88, 104
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	71, 184
NspV	TTCGAA	1 cut(s)	201
PagI	TCATGA	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	31, 177
SatI	GCNGC	2 cut(s)	30, 176
Sau3AI	GATC	1 cut(s)	70
SetI	ASST	6 cut(s)	9, 17, 66, 192, 217, 223
SfuI	TTCGAA	1 cut(s)	201
SsiI	CCGC	3 cut(s)	29, 114, 175
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	195, 201
TaqII	GACCGA	1 cut(s)	35
TauI	GCSGC	2 cut(s)	32, 178
TfiI	GAWTC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	56, 93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.