Rh2AG193900

Ribonuclease III family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
19193966 .. 19201401
7436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG193900.1

Sequence Viewer

Length: 1200 bp
ATGCTCATAACCTTCCATACCCAAAACCCACTATCACTCATGGAACTCTCTTCAACCTTCACACAGGTCTCAACCCCATCCTCCTCCTACAACACTTACTCTTTCTCTTCTTCCTTGTCACCTTTCCCAACCCAAATCCGCCTCATGACCCCCAAATCCCACAACCCCAATTCTCGAAACTTCCGAGTTCTCGCCGTCGCAGTCGACCCACAAGAGCTCCCCAAGAACAGTCCGCAGAGGCTCCTCAAGGAGCTCTCAGAGCGCAAAAGAGTCACTTCTCCCAAGAAAAAAGTACCCCCGAAACGTTTCATACTCCGGCCACCGTTAGATGACAACAGACTAGCTCAGAGGTTCCTCAACAGCCCACAACTCTCACTCAAATCCTTTCCTTTGCTCAGTTCTTGCTTACCCTCTTCGCGACTCAACAATGCCGATAAGGCGTGGATAGATGAGTACTTGCTTGAGGCTAAGCAAGCTCTTGGGTACCCACTTGAGCCCTCTGAGAGGTTAGGGGATGATAACCCAGCTAAGCAGTTTGATACATTGCTGTACATGGCGTTTCAGCATCCCAGTTGTGAGAGGACTAATGCCCGGCACGTGCGGTCTGCGCATTCGAGGCTGTGGTTTCTGGGGCAGTATGTGCTTGAGTTGGGTTTGGCTGAGTTTTTCTTGCAGAGGTATCCGAGGGAGAGTCCTGGTCCTATGAGGGAGAGGGTGTTTGCGTTGATTGGGAAGAGGTACTTGCCCAGGTGGATTAAGGCTGCTAGCTTGCAGAACTTGGTGTTTCCTTTTGATGATATGGATAAGTTGCAGAGGAAGGAGAGAGAGCCGCCTGTCAAGTGTGTATTCTGGGCATTGTTTGGGGCGATATATTTGTGTTTTGGTATGCCAGAAGTATATCGTGTTCTTTTTGAAGTATTTGGAATGGACCCAGAAGATGAGGACTGCCAGCCAAGATTACGGAGACAACTAGAAGATGTTGATTATGTTTCAGTAGAATTTGAAGACAAAAAGCTCAGCTGGCAAGATGTTGCAGTTTACAGGGCAAGCTCTATATCTTCATTCTTTTTTCTGTTAATAATTTATGTTGATAGACAAGAAAGACAAAATGAAAACACAGTCCAAACATTGGGATCTTGTCTCAGACGGTCAGGGAAAAAAAAAAAATTCTGTTTTTTAAGTGCACTTTTGTATGCATAA

Protein Analysis

399

Amino Acids

46.36

Weight (kDa)

9.37

Isoelectric Point (pI)

54.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonucleas_3_3 PF14622 181 - 302 7.2e-08 Ribonuclease-III-like
Ribonuclease_3 PF00636 206 - 293 9.9e-06 Ribonuclease III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 609
Acc65I GGTACC 1 cut(s) 483
AccB1I GGYRCC 1 cut(s) 483
AccB7I CCANNNNNTGG 1 cut(s) 1129
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 418
AciI CCGC 4 cut(s) 139, 233, 601, 830
AclI AACGTT 1 cut(s) 304
AclWI GGATC 1 cut(s) 1141
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 2 cut(s) 998, 1166
AcvI CACGTG 1 cut(s) 598
AfaI GTAC 5 cut(s) 294, 455, 485, 551, 740
AfiI CCNNNNNNNGG 2 cut(s) 504, 1129
AgsI TTSAA 3 cut(s) 54, 914, 1004
AjnI CCWGG 2 cut(s) 694, 746
AluBI AGCT 9 cut(s) 217, 253, 344, 476, 527, 768, 1015, 1020, 1050
AluI AGCT 9 cut(s) 217, 253, 344, 476, 527, 768, 1015, 1020, 1050
Alw21I GWGCWC 3 cut(s) 219, 255, 1186
Alw26I GTCTC 3 cut(s) 73, 958, 1145
Alw44I GTGCAC 1 cut(s) 1182
AlwI GGATC 1 cut(s) 1141
AoxI GGCC 1 cut(s) 317
ApaLI GTGCAC 1 cut(s) 1182
ApeKI GCWGC 1 cut(s) 761
ApoI RAATTY 2 cut(s) 998, 1166
Asp700I GAANNNNTTC 1 cut(s) 305
Asp718I GGTACC 1 cut(s) 483
AspLEI GCGC 2 cut(s) 264, 610
AspS9I GGNCC 2 cut(s) 698, 928
AsuC2I CCSGG 1 cut(s) 592
AsuHPI GGTGA 1 cut(s) 111
AsuNHI GCTAGC 1 cut(s) 764
AvaII GGWCC 2 cut(s) 698, 928
BaeGI GKGCMC 1 cut(s) 1186
BanI GGYRCC 1 cut(s) 483
BanII GRGCYC 3 cut(s) 219, 255, 498
BbrPI CACGTG 1 cut(s) 598
BbsI GAAGAC 1 cut(s) 1011
Bbv12I GWGCWC 3 cut(s) 219, 255, 1186
BbvI GCAGC 1 cut(s) 748
BccI CCATC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 179
BciT130I CCWGG 2 cut(s) 696, 748
BciVI GTATCC 1 cut(s) 690
BcnI CCSGG 1 cut(s) 592
BcoDI GTCTC 3 cut(s) 73, 958, 1145
BfaI CTAG 3 cut(s) 341, 765, 971
BfuI GTATCC 1 cut(s) 690
BglI GCCNNNNNGGC 1 cut(s) 437
BisI GCNGC 2 cut(s) 762, 830
BlpI GCTNAGC 3 cut(s) 468, 528, 1016
BlsI GCNGC 2 cut(s) 763, 831
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 3 cut(s) 592, 696, 748
Bme18I GGWCC 2 cut(s) 698, 928
BmgT120I GGNCC 2 cut(s) 698, 928
BmiI GGNNCC 4 cut(s) 242, 353, 485, 930
BmrFI CCNGG 3 cut(s) 592, 696, 748
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 1 cut(s) 574
BmtI GCTAGC 1 cut(s) 768
BmuI ACTGGG 1 cut(s) 564
BpiI GAAGAC 1 cut(s) 1011
Bpu1102I GCTNAGC 3 cut(s) 468, 528, 1016
BpuEI CTTGAG 4 cut(s) 230, 482, 512, 665
BpuMI CCSGG 1 cut(s) 592
BsaAI YACGTR 1 cut(s) 598
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 683, 746
BsaXI ACNNNNNCTCC 4 cut(s) 201, 231, 701, 731
Bsc4I CCNNNNNNNGG 2 cut(s) 504, 1129
Bse1I ACTGG 1 cut(s) 570
Bse3DI GCAATG 1 cut(s) 542
BseBI CCWGG 2 cut(s) 696, 748
BseDI CCNNGG 2 cut(s) 683, 746
BseGI GGATG 3 cut(s) 77, 520, 565
BseLI CCNNNNNNNGG 2 cut(s) 504, 1129
BseMI GCAATG 1 cut(s) 542
BseMII CTCAG 7 cut(s) 270, 359, 409, 492, 651, 1030, 1156
BseNI ACTGG 1 cut(s) 570
BseRI GAGGAG 2 cut(s) 73, 233
BseSI GKGCMC 1 cut(s) 1186
BseXI GCAGC 1 cut(s) 748
BseYI CCCAGC 1 cut(s) 523
Bsh1236I CGCG 1 cut(s) 418
BshFI GGCC 1 cut(s) 319
BshNI GGYRCC 1 cut(s) 483
BsiHKAI GWGCWC 3 cut(s) 219, 255, 1186
BsiSI CCGG 2 cut(s) 316, 592
BslI CCNNNNNNNGG 2 cut(s) 504, 1129
BsmAI GTCTC 3 cut(s) 73, 958, 1145
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 1 cut(s) 319
Bso31I GGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 4 cut(s) 219, 255, 498, 1186
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 1 cut(s) 1133
Bsp1720I GCTNAGC 3 cut(s) 468, 528, 1016
Bsp68I TCGCGA 1 cut(s) 418
BspACI CCGC 4 cut(s) 139, 233, 601, 830
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 7 cut(s) 269, 358, 408, 493, 652, 1029, 1155
BspFNI CGCG 1 cut(s) 418
BspHI TCATGA 1 cut(s) 144
BspLI GGNNCC 4 cut(s) 242, 353, 485, 930
BspOI GCTAGC 1 cut(s) 768
BspPI GGATC 1 cut(s) 1141
BspT107I GGYRCC 1 cut(s) 483
BspTNI GGTCTC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 542
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 1 cut(s) 570
BssECI CCNNGG 2 cut(s) 683, 746
BssMI GATC 1 cut(s) 1133
Bst2UI CCWGG 2 cut(s) 696, 748
Bst4CI ACNGT 4 cut(s) 230, 324, 1120, 1149
Bst6I CTCTTC 4 cut(s) 55, 112, 418, 728
BstAPI GCANNNNNTGC 1 cut(s) 640
BstAUI TGTACA 1 cut(s) 549
BstBAI YACGTR 1 cut(s) 598
BstC8I GCNNGC 6 cut(s) 474, 766, 770, 950, 1022, 1048
BstDEI CTNAG 9 cut(s) 256, 345, 395, 468, 501, 528, 660, 1016, 1142
BstENI CCTNNNNNAGG 1 cut(s) 502
BstF5I GGATG 3 cut(s) 77, 520, 565
BstFNI CGCG 1 cut(s) 418
BstHHI GCGC 2 cut(s) 264, 610
BstKTI GATC 1 cut(s) 1136
BstMAI GTCTC 3 cut(s) 73, 958, 1145
BstMBI GATC 1 cut(s) 1133
BstMWI GCNNNNNNNGC 7 cut(s) 259, 437, 473, 607, 616, 640, 1021
BstNI CCWGG 2 cut(s) 696, 748
BstSCI CCNGG 3 cut(s) 590, 694, 746
BstSLI GKGCMC 1 cut(s) 1186
BstUI CGCG 1 cut(s) 418
BstV1I GCAGC 1 cut(s) 748
BstV2I GAAGAC 1 cut(s) 1011
BstX2I RGATCY 1 cut(s) 1133
BstYI RGATCY 1 cut(s) 1133
BsuI GTATCC 1 cut(s) 690
BsuRI GGCC 1 cut(s) 319
BtsCI GGATG 3 cut(s) 77, 520, 565
BtuMI TCGCGA 1 cut(s) 418
Cac8I GCNNGC 6 cut(s) 474, 766, 770, 950, 1022, 1048
CciI TCATGA 1 cut(s) 144
CfoI GCGC 2 cut(s) 264, 610
Cfr13I GGNCC 2 cut(s) 698, 928
Csp6I GTAC 5 cut(s) 293, 454, 484, 550, 739
CviAII CATG 3 cut(s) 40, 145, 553
CviQI GTAC 5 cut(s) 293, 454, 484, 550, 739
DdeI CTNAG 9 cut(s) 256, 345, 395, 468, 501, 528, 660, 1016, 1142
DpnI GATC 1 cut(s) 1135
DpnII GATC 1 cut(s) 1133
EaeI YGGCCR 1 cut(s) 317
Eam1104I CTCTTC 4 cut(s) 55, 112, 418, 728
EarI CTCTTC 4 cut(s) 55, 112, 418, 728
EciI GGCGGA 1 cut(s) 128
Ecl136II GAGCTC 2 cut(s) 217, 253
Eco24I GRGCYC 3 cut(s) 219, 255, 498
Eco31I GGTCTC 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 698, 928
Eco53kI GAGCTC 2 cut(s) 217, 253
Eco72I CACGTG 1 cut(s) 598
EcoICRI GAGCTC 2 cut(s) 217, 253
EcoNI CCTNNNNNAGG 1 cut(s) 502
EcoRII CCWGG 2 cut(s) 694, 746
EcoT22I ATGCAT 1 cut(s) 1198
EcoT38I GRGCYC 3 cut(s) 219, 255, 498
FaeI CATG 3 cut(s) 43, 148, 556
FalI AAGNNNNNCTT 4 cut(s) 259, 291, 725, 757
FatI CATG 3 cut(s) 39, 144, 552
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 762, 830
FokI GGATG 3 cut(s) 64, 527, 552
FriOI GRGCYC 3 cut(s) 219, 255, 498
Fsp4HI GCNGC 2 cut(s) 762, 830
FspBI CTAG 3 cut(s) 341, 765, 971
FspI TGCGCA 1 cut(s) 609
GlaI GCGC 2 cut(s) 263, 609
GluI GCNGC 2 cut(s) 762, 830
GsaI CCCAGC 1 cut(s) 527
HaeIII GGCC 1 cut(s) 319
HapII CCGG 2 cut(s) 316, 592
HhaI GCGC 2 cut(s) 264, 610
Hin1II CATG 3 cut(s) 43, 148, 556
Hin6I GCGC 2 cut(s) 262, 608
HinP1I GCGC 2 cut(s) 262, 608
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 3 cut(s) 270, 420, 691
HpaII CCGG 2 cut(s) 316, 592
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 3 cut(s) 205, 1039, 1184
Hpy188I TCNGA 6 cut(s) 185, 259, 348, 502, 684, 1145
Hpy188III TCNNGA 3 cut(s) 145, 174, 417
Hpy8I GTNNAC 3 cut(s) 205, 1039, 1184
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 3 cut(s) 22, 67, 811
HpyCH4III ACNGT 4 cut(s) 230, 324, 1120, 1149
HpyCH4IV ACGT 2 cut(s) 304, 597
HpyCH4V TGCA 6 cut(s) 673, 772, 811, 1034, 1184, 1196
HpyF10VI GCNNNNNNNGC 7 cut(s) 259, 437, 473, 607, 616, 640, 1021
HpyF3I CTNAG 9 cut(s) 256, 345, 395, 468, 501, 528, 660, 1016, 1142
HpySE526I ACGT 2 cut(s) 304, 597
Hsp92II CATG 3 cut(s) 43, 148, 556
HspAI GCGC 2 cut(s) 262, 608
KpnI GGTACC 1 cut(s) 487
Kzo9I GATC 1 cut(s) 1133
LmnI GCTCC 3 cut(s) 222, 246, 250
Lsp1109I GCAGC 1 cut(s) 748
LweI GCATC 1 cut(s) 574
MaeI CTAG 3 cut(s) 341, 765, 971
MaeII ACGT 2 cut(s) 304, 597
MaeIII GTNAC 2 cut(s) 117, 271
MalI GATC 1 cut(s) 1135
MboI GATC 1 cut(s) 1133
MboII GAAGA 9 cut(s) 42, 99, 102, 405, 745, 947, 986, 1016, 1050
MflI RGATCY 1 cut(s) 1133
MhlI GDGCHC 4 cut(s) 219, 255, 498, 1186
MluCI AATT 4 cut(s) 169, 998, 1080, 1166
MlyI GAGTC 3 cut(s) 279, 414, 700
Mph1103I ATGCAT 1 cut(s) 1198
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 3 cut(s) 756, 1076, 1178
MspA1I CMGCKG 1 cut(s) 1020
MspI CCGG 2 cut(s) 316, 592
MspR9I CCNGG 3 cut(s) 592, 696, 748
Mva1269I GAATGC 1 cut(s) 610
MvaI CCWGG 2 cut(s) 696, 748
MvnI CGCG 1 cut(s) 418
MwoI GCNNNNNNNGC 7 cut(s) 259, 437, 473, 607, 616, 640, 1021
NciI CCSGG 1 cut(s) 592
NdeII GATC 1 cut(s) 1133
NheI GCTAGC 1 cut(s) 764
NlaIII CATG 3 cut(s) 43, 148, 556
NlaIV GGNNCC 4 cut(s) 242, 353, 485, 930
NmuCI GTSAC 2 cut(s) 117, 271
NruI TCGCGA 1 cut(s) 418
NsbI TGCGCA 1 cut(s) 609
NsiI ATGCAT 1 cut(s) 1198
PagI TCATGA 1 cut(s) 144
PcsI WCGNNNNNNNCGW 1 cut(s) 181
PctI GAATGC 1 cut(s) 610
PdmI GAANNNNTTC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 1129
PkrI GCNGC 2 cut(s) 763, 831
PleI GAGTC 3 cut(s) 278, 414, 699
PmaCI CACGTG 1 cut(s) 598
PmlI CACGTG 1 cut(s) 598
PpsI GAGTC 3 cut(s) 278, 414, 699
Ppu21I YACGTR 1 cut(s) 598
Psp124BI GAGCTC 2 cut(s) 219, 255
Psp1406I AACGTT 1 cut(s) 304
Psp6I CCWGG 2 cut(s) 694, 746
PspCI CACGTG 1 cut(s) 598
PspFI CCCAGC 1 cut(s) 523
PspGI CCWGG 2 cut(s) 694, 746
PspN4I GGNNCC 4 cut(s) 242, 353, 485, 930
PspPI GGNCC 2 cut(s) 698, 928
PsrI GAACNNNNNNTAC 2 cut(s) 888, 920
PsuI RGATCY 1 cut(s) 1133
PvuII CAGCTG 1 cut(s) 1020
RruI TCGCGA 1 cut(s) 418
RsaI GTAC 5 cut(s) 294, 455, 485, 551, 740
RsaNI GTAC 5 cut(s) 293, 454, 484, 550, 739
SacI GAGCTC 2 cut(s) 219, 255
SalI GTCGAC 1 cut(s) 203
SaqAI TTAA 3 cut(s) 756, 1076, 1178
SatI GCNGC 2 cut(s) 762, 830
Sau3AI GATC 1 cut(s) 1133
Sau96I GGNCC 2 cut(s) 698, 928
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 3 cut(s) 279, 414, 700
ScrFI CCNGG 3 cut(s) 592, 696, 748
SduI GDGCHC 4 cut(s) 219, 255, 498, 1186
SfaNI GCATC 1 cut(s) 574
SinI GGWCC 2 cut(s) 698, 928
SmlI CTYRAG 4 cut(s) 245, 461, 491, 644
SmoI CTYRAG 4 cut(s) 245, 461, 491, 644
Sse9I AATT 4 cut(s) 169, 998, 1080, 1166
SsiI CCGC 4 cut(s) 139, 233, 601, 830
SspMI CTAG 3 cut(s) 341, 765, 971
SstI GAGCTC 2 cut(s) 219, 255
StyD4I CCNGG 3 cut(s) 590, 694, 746
TaaI ACNGT 4 cut(s) 230, 324, 1120, 1149
TaiI ACGT 2 cut(s) 307, 600
TaqI TCGA 3 cut(s) 175, 204, 614
TasI AATT 4 cut(s) 169, 998, 1080, 1166
TatI WGTACW 2 cut(s) 453, 549
TauI GCSGC 1 cut(s) 832
Tru1I TTAA 3 cut(s) 756, 1076, 1178
Tru9I TTAA 3 cut(s) 756, 1076, 1178
TseFI GTSAC 2 cut(s) 117, 271
TseI GCWGC 1 cut(s) 761
Tsp45I GTSAC 2 cut(s) 117, 271
TspDTI ATGAA 3 cut(s) 298, 1050, 1125
TspGWI ACGGA 1 cut(s) 976
Van91I CCANNNNNTGG 1 cut(s) 1129
VneI GTGCAC 1 cut(s) 1182
VpaK11BI GGWCC 2 cut(s) 698, 928
XagI CCTNNNNNAGG 1 cut(s) 502
XapI RAATTY 2 cut(s) 998, 1166
XmiI GTMKAC 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 3 cut(s) 341, 765, 971
ZrmI AGTACT 1 cut(s) 455
Zsp2I ATGCAT 1 cut(s) 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.