Ribonuclease III family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G48121 AT2G48121 AT4G37510 |
| fragaria_vesca | FvH4_1g17270 FvH4_1g17270 |
| malus_domestica | MD15G1293700.v1.1 |
| prunus_persica | Prupe.6G223800_v2.0.a1 |
| pyrus_communis | pycom15g25680 |
| rosa_chinensis | RchiOBHm_Chr2g0107461 |
| rosa_laevigata | RLG00000017580 |
| rosa_multiflora | Rmu_sc0005152.1_g000009 Rmu_sc0025013.1_g000002 Rmu_sc0039159.1_g000001 Rmu_sc0040873.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00136320 |
| rosa_rugosa | Rorug02G0143700 Rorug02G0143800 |
| rosa_samantha | Rh2AG193900 Rh2AG299800 Rh2BG206100 Rh2CG199100 Rh2DG201100 Rh2DG323800 |
| rosa_wichuraiana | Rw2G015360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 609 |
| Acc65I | GGTACC | 1 cut(s) | 483 |
| AccB1I | GGYRCC | 1 cut(s) | 483 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1129 |
| AccI | GTMKAC | 1 cut(s) | 204 |
| AccII | CGCG | 1 cut(s) | 418 |
| AciI | CCGC | 4 cut(s) | 139, 233, 601, 830 |
| AclI | AACGTT | 1 cut(s) | 304 |
| AclWI | GGATC | 1 cut(s) | 1141 |
| AcoI | YGGCCR | 1 cut(s) | 317 |
| AcsI | RAATTY | 2 cut(s) | 998, 1166 |
| AcvI | CACGTG | 1 cut(s) | 598 |
| AfaI | GTAC | 5 cut(s) | 294, 455, 485, 551, 740 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 504, 1129 |
| AgsI | TTSAA | 3 cut(s) | 54, 914, 1004 |
| AjnI | CCWGG | 2 cut(s) | 694, 746 |
| AluBI | AGCT | 9 cut(s) | 217, 253, 344, 476, 527, 768, 1015, 1020, 1050 |
| AluI | AGCT | 9 cut(s) | 217, 253, 344, 476, 527, 768, 1015, 1020, 1050 |
| Alw21I | GWGCWC | 3 cut(s) | 219, 255, 1186 |
| Alw26I | GTCTC | 3 cut(s) | 73, 958, 1145 |
| Alw44I | GTGCAC | 1 cut(s) | 1182 |
| AlwI | GGATC | 1 cut(s) | 1141 |
| AoxI | GGCC | 1 cut(s) | 317 |
| ApaLI | GTGCAC | 1 cut(s) | 1182 |
| ApeKI | GCWGC | 1 cut(s) | 761 |
| ApoI | RAATTY | 2 cut(s) | 998, 1166 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 305 |
| Asp718I | GGTACC | 1 cut(s) | 483 |
| AspLEI | GCGC | 2 cut(s) | 264, 610 |
| AspS9I | GGNCC | 2 cut(s) | 698, 928 |
| AsuC2I | CCSGG | 1 cut(s) | 592 |
| AsuHPI | GGTGA | 1 cut(s) | 111 |
| AsuNHI | GCTAGC | 1 cut(s) | 764 |
| AvaII | GGWCC | 2 cut(s) | 698, 928 |
| BaeGI | GKGCMC | 1 cut(s) | 1186 |
| BanI | GGYRCC | 1 cut(s) | 483 |
| BanII | GRGCYC | 3 cut(s) | 219, 255, 498 |
| BbrPI | CACGTG | 1 cut(s) | 598 |
| BbsI | GAAGAC | 1 cut(s) | 1011 |
| Bbv12I | GWGCWC | 3 cut(s) | 219, 255, 1186 |
| BbvI | GCAGC | 1 cut(s) | 748 |
| BccI | CCATC | 1 cut(s) | 85 |
| BceAI | ACGGC | 1 cut(s) | 179 |
| BciT130I | CCWGG | 2 cut(s) | 696, 748 |
| BciVI | GTATCC | 1 cut(s) | 690 |
| BcnI | CCSGG | 1 cut(s) | 592 |
| BcoDI | GTCTC | 3 cut(s) | 73, 958, 1145 |
| BfaI | CTAG | 3 cut(s) | 341, 765, 971 |
| BfuI | GTATCC | 1 cut(s) | 690 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 437 |
| BisI | GCNGC | 2 cut(s) | 762, 830 |
| BlpI | GCTNAGC | 3 cut(s) | 468, 528, 1016 |
| BlsI | GCNGC | 2 cut(s) | 763, 831 |
| BmcAI | AGTACT | 1 cut(s) | 455 |
| Bme1390I | CCNGG | 3 cut(s) | 592, 696, 748 |
| Bme18I | GGWCC | 2 cut(s) | 698, 928 |
| BmgT120I | GGNCC | 2 cut(s) | 698, 928 |
| BmiI | GGNNCC | 4 cut(s) | 242, 353, 485, 930 |
| BmrFI | CCNGG | 3 cut(s) | 592, 696, 748 |
| BmrI | ACTGGG | 1 cut(s) | 564 |
| BmsI | GCATC | 1 cut(s) | 574 |
| BmtI | GCTAGC | 1 cut(s) | 768 |
| BmuI | ACTGGG | 1 cut(s) | 564 |
| BpiI | GAAGAC | 1 cut(s) | 1011 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 468, 528, 1016 |
| BpuEI | CTTGAG | 4 cut(s) | 230, 482, 512, 665 |
| BpuMI | CCSGG | 1 cut(s) | 592 |
| BsaAI | YACGTR | 1 cut(s) | 598 |
| BsaI | GGTCTC | 1 cut(s) | 73 |
| BsaJI | CCNNGG | 2 cut(s) | 683, 746 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 201, 231, 701, 731 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 504, 1129 |
| Bse1I | ACTGG | 1 cut(s) | 570 |
| Bse3DI | GCAATG | 1 cut(s) | 542 |
| BseBI | CCWGG | 2 cut(s) | 696, 748 |
| BseDI | CCNNGG | 2 cut(s) | 683, 746 |
| BseGI | GGATG | 3 cut(s) | 77, 520, 565 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 504, 1129 |
| BseMI | GCAATG | 1 cut(s) | 542 |
| BseMII | CTCAG | 7 cut(s) | 270, 359, 409, 492, 651, 1030, 1156 |
| BseNI | ACTGG | 1 cut(s) | 570 |
| BseRI | GAGGAG | 2 cut(s) | 73, 233 |
| BseSI | GKGCMC | 1 cut(s) | 1186 |
| BseXI | GCAGC | 1 cut(s) | 748 |
| BseYI | CCCAGC | 1 cut(s) | 523 |
| Bsh1236I | CGCG | 1 cut(s) | 418 |
| BshFI | GGCC | 1 cut(s) | 319 |
| BshNI | GGYRCC | 1 cut(s) | 483 |
| BsiHKAI | GWGCWC | 3 cut(s) | 219, 255, 1186 |
| BsiSI | CCGG | 2 cut(s) | 316, 592 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 504, 1129 |
| BsmAI | GTCTC | 3 cut(s) | 73, 958, 1145 |
| BsmI | GAATGC | 1 cut(s) | 610 |
| BsnI | GGCC | 1 cut(s) | 319 |
| Bso31I | GGTCTC | 1 cut(s) | 73 |
| Bsp1286I | GDGCHC | 4 cut(s) | 219, 255, 498, 1186 |
| Bsp1407I | TGTACA | 1 cut(s) | 549 |
| Bsp143I | GATC | 1 cut(s) | 1133 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 468, 528, 1016 |
| Bsp68I | TCGCGA | 1 cut(s) | 418 |
| BspACI | CCGC | 4 cut(s) | 139, 233, 601, 830 |
| BspANI | GGCC | 1 cut(s) | 319 |
| BspCNI | CTCAG | 7 cut(s) | 269, 358, 408, 493, 652, 1029, 1155 |
| BspFNI | CGCG | 1 cut(s) | 418 |
| BspHI | TCATGA | 1 cut(s) | 144 |
| BspLI | GGNNCC | 4 cut(s) | 242, 353, 485, 930 |
| BspOI | GCTAGC | 1 cut(s) | 768 |
| BspPI | GGATC | 1 cut(s) | 1141 |
| BspT107I | GGYRCC | 1 cut(s) | 483 |
| BspTNI | GGTCTC | 1 cut(s) | 73 |
| BsrDI | GCAATG | 1 cut(s) | 542 |
| BsrGI | TGTACA | 1 cut(s) | 549 |
| BsrI | ACTGG | 1 cut(s) | 570 |
| BssECI | CCNNGG | 2 cut(s) | 683, 746 |
| BssMI | GATC | 1 cut(s) | 1133 |
| Bst2UI | CCWGG | 2 cut(s) | 696, 748 |
| Bst4CI | ACNGT | 4 cut(s) | 230, 324, 1120, 1149 |
| Bst6I | CTCTTC | 4 cut(s) | 55, 112, 418, 728 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 640 |
| BstAUI | TGTACA | 1 cut(s) | 549 |
| BstBAI | YACGTR | 1 cut(s) | 598 |
| BstC8I | GCNNGC | 6 cut(s) | 474, 766, 770, 950, 1022, 1048 |
| BstDEI | CTNAG | 9 cut(s) | 256, 345, 395, 468, 501, 528, 660, 1016, 1142 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 502 |
| BstF5I | GGATG | 3 cut(s) | 77, 520, 565 |
| BstFNI | CGCG | 1 cut(s) | 418 |
| BstHHI | GCGC | 2 cut(s) | 264, 610 |
| BstKTI | GATC | 1 cut(s) | 1136 |
| BstMAI | GTCTC | 3 cut(s) | 73, 958, 1145 |
| BstMBI | GATC | 1 cut(s) | 1133 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 259, 437, 473, 607, 616, 640, 1021 |
| BstNI | CCWGG | 2 cut(s) | 696, 748 |
| BstSCI | CCNGG | 3 cut(s) | 590, 694, 746 |
| BstSLI | GKGCMC | 1 cut(s) | 1186 |
| BstUI | CGCG | 1 cut(s) | 418 |
| BstV1I | GCAGC | 1 cut(s) | 748 |
| BstV2I | GAAGAC | 1 cut(s) | 1011 |
| BstX2I | RGATCY | 1 cut(s) | 1133 |
| BstYI | RGATCY | 1 cut(s) | 1133 |
| BsuI | GTATCC | 1 cut(s) | 690 |
| BsuRI | GGCC | 1 cut(s) | 319 |
| BtsCI | GGATG | 3 cut(s) | 77, 520, 565 |
| BtuMI | TCGCGA | 1 cut(s) | 418 |
| Cac8I | GCNNGC | 6 cut(s) | 474, 766, 770, 950, 1022, 1048 |
| CciI | TCATGA | 1 cut(s) | 144 |
| CfoI | GCGC | 2 cut(s) | 264, 610 |
| Cfr13I | GGNCC | 2 cut(s) | 698, 928 |
| Csp6I | GTAC | 5 cut(s) | 293, 454, 484, 550, 739 |
| CviAII | CATG | 3 cut(s) | 40, 145, 553 |
| CviQI | GTAC | 5 cut(s) | 293, 454, 484, 550, 739 |
| DdeI | CTNAG | 9 cut(s) | 256, 345, 395, 468, 501, 528, 660, 1016, 1142 |
| DpnI | GATC | 1 cut(s) | 1135 |
| DpnII | GATC | 1 cut(s) | 1133 |
| EaeI | YGGCCR | 1 cut(s) | 317 |
| Eam1104I | CTCTTC | 4 cut(s) | 55, 112, 418, 728 |
| EarI | CTCTTC | 4 cut(s) | 55, 112, 418, 728 |
| EciI | GGCGGA | 1 cut(s) | 128 |
| Ecl136II | GAGCTC | 2 cut(s) | 217, 253 |
| Eco24I | GRGCYC | 3 cut(s) | 219, 255, 498 |
| Eco31I | GGTCTC | 1 cut(s) | 73 |
| Eco47I | GGWCC | 2 cut(s) | 698, 928 |
| Eco53kI | GAGCTC | 2 cut(s) | 217, 253 |
| Eco72I | CACGTG | 1 cut(s) | 598 |
| EcoICRI | GAGCTC | 2 cut(s) | 217, 253 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 502 |
| EcoRII | CCWGG | 2 cut(s) | 694, 746 |
| EcoT22I | ATGCAT | 1 cut(s) | 1198 |
| EcoT38I | GRGCYC | 3 cut(s) | 219, 255, 498 |
| FaeI | CATG | 3 cut(s) | 43, 148, 556 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 259, 291, 725, 757 |
| FatI | CATG | 3 cut(s) | 39, 144, 552 |
| FblI | GTMKAC | 1 cut(s) | 204 |
| Fnu4HI | GCNGC | 2 cut(s) | 762, 830 |
| FokI | GGATG | 3 cut(s) | 64, 527, 552 |
| FriOI | GRGCYC | 3 cut(s) | 219, 255, 498 |
| Fsp4HI | GCNGC | 2 cut(s) | 762, 830 |
| FspBI | CTAG | 3 cut(s) | 341, 765, 971 |
| FspI | TGCGCA | 1 cut(s) | 609 |
| GlaI | GCGC | 2 cut(s) | 263, 609 |
| GluI | GCNGC | 2 cut(s) | 762, 830 |
| GsaI | CCCAGC | 1 cut(s) | 527 |
| HaeIII | GGCC | 1 cut(s) | 319 |
| HapII | CCGG | 2 cut(s) | 316, 592 |
| HhaI | GCGC | 2 cut(s) | 264, 610 |
| Hin1II | CATG | 3 cut(s) | 43, 148, 556 |
| Hin6I | GCGC | 2 cut(s) | 262, 608 |
| HinP1I | GCGC | 2 cut(s) | 262, 608 |
| HincII | GTYRAC | 1 cut(s) | 205 |
| HindII | GTYRAC | 1 cut(s) | 205 |
| HinfI | GANTC | 3 cut(s) | 270, 420, 691 |
| HpaII | CCGG | 2 cut(s) | 316, 592 |
| HphI | GGTGA | 1 cut(s) | 111 |
| Hpy166II | GTNNAC | 3 cut(s) | 205, 1039, 1184 |
| Hpy188I | TCNGA | 6 cut(s) | 185, 259, 348, 502, 684, 1145 |
| Hpy188III | TCNNGA | 3 cut(s) | 145, 174, 417 |
| Hpy8I | GTNNAC | 3 cut(s) | 205, 1039, 1184 |
| Hpy99I | CGWCG | 1 cut(s) | 200 |
| HpyAV | CCTTC | 3 cut(s) | 22, 67, 811 |
| HpyCH4III | ACNGT | 4 cut(s) | 230, 324, 1120, 1149 |
| HpyCH4IV | ACGT | 2 cut(s) | 304, 597 |
| HpyCH4V | TGCA | 6 cut(s) | 673, 772, 811, 1034, 1184, 1196 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 259, 437, 473, 607, 616, 640, 1021 |
| HpyF3I | CTNAG | 9 cut(s) | 256, 345, 395, 468, 501, 528, 660, 1016, 1142 |
| HpySE526I | ACGT | 2 cut(s) | 304, 597 |
| Hsp92II | CATG | 3 cut(s) | 43, 148, 556 |
| HspAI | GCGC | 2 cut(s) | 262, 608 |
| KpnI | GGTACC | 1 cut(s) | 487 |
| Kzo9I | GATC | 1 cut(s) | 1133 |
| LmnI | GCTCC | 3 cut(s) | 222, 246, 250 |
| Lsp1109I | GCAGC | 1 cut(s) | 748 |
| LweI | GCATC | 1 cut(s) | 574 |
| MaeI | CTAG | 3 cut(s) | 341, 765, 971 |
| MaeII | ACGT | 2 cut(s) | 304, 597 |
| MaeIII | GTNAC | 2 cut(s) | 117, 271 |
| MalI | GATC | 1 cut(s) | 1135 |
| MboI | GATC | 1 cut(s) | 1133 |
| MboII | GAAGA | 9 cut(s) | 42, 99, 102, 405, 745, 947, 986, 1016, 1050 |
| MflI | RGATCY | 1 cut(s) | 1133 |
| MhlI | GDGCHC | 4 cut(s) | 219, 255, 498, 1186 |
| MluCI | AATT | 4 cut(s) | 169, 998, 1080, 1166 |
| MlyI | GAGTC | 3 cut(s) | 279, 414, 700 |
| Mph1103I | ATGCAT | 1 cut(s) | 1198 |
| MroXI | GAANNNNTTC | 1 cut(s) | 305 |
| MseI | TTAA | 3 cut(s) | 756, 1076, 1178 |
| MspA1I | CMGCKG | 1 cut(s) | 1020 |
| MspI | CCGG | 2 cut(s) | 316, 592 |
| MspR9I | CCNGG | 3 cut(s) | 592, 696, 748 |
| Mva1269I | GAATGC | 1 cut(s) | 610 |
| MvaI | CCWGG | 2 cut(s) | 696, 748 |
| MvnI | CGCG | 1 cut(s) | 418 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 259, 437, 473, 607, 616, 640, 1021 |
| NciI | CCSGG | 1 cut(s) | 592 |
| NdeII | GATC | 1 cut(s) | 1133 |
| NheI | GCTAGC | 1 cut(s) | 764 |
| NlaIII | CATG | 3 cut(s) | 43, 148, 556 |
| NlaIV | GGNNCC | 4 cut(s) | 242, 353, 485, 930 |
| NmuCI | GTSAC | 2 cut(s) | 117, 271 |
| NruI | TCGCGA | 1 cut(s) | 418 |
| NsbI | TGCGCA | 1 cut(s) | 609 |
| NsiI | ATGCAT | 1 cut(s) | 1198 |
| PagI | TCATGA | 1 cut(s) | 144 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 181 |
| PctI | GAATGC | 1 cut(s) | 610 |
| PdmI | GAANNNNTTC | 1 cut(s) | 305 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1129 |
| PkrI | GCNGC | 2 cut(s) | 763, 831 |
| PleI | GAGTC | 3 cut(s) | 278, 414, 699 |
| PmaCI | CACGTG | 1 cut(s) | 598 |
| PmlI | CACGTG | 1 cut(s) | 598 |
| PpsI | GAGTC | 3 cut(s) | 278, 414, 699 |
| Ppu21I | YACGTR | 1 cut(s) | 598 |
| Psp124BI | GAGCTC | 2 cut(s) | 219, 255 |
| Psp1406I | AACGTT | 1 cut(s) | 304 |
| Psp6I | CCWGG | 2 cut(s) | 694, 746 |
| PspCI | CACGTG | 1 cut(s) | 598 |
| PspFI | CCCAGC | 1 cut(s) | 523 |
| PspGI | CCWGG | 2 cut(s) | 694, 746 |
| PspN4I | GGNNCC | 4 cut(s) | 242, 353, 485, 930 |
| PspPI | GGNCC | 2 cut(s) | 698, 928 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 888, 920 |
| PsuI | RGATCY | 1 cut(s) | 1133 |
| PvuII | CAGCTG | 1 cut(s) | 1020 |
| RruI | TCGCGA | 1 cut(s) | 418 |
| RsaI | GTAC | 5 cut(s) | 294, 455, 485, 551, 740 |
| RsaNI | GTAC | 5 cut(s) | 293, 454, 484, 550, 739 |
| SacI | GAGCTC | 2 cut(s) | 219, 255 |
| SalI | GTCGAC | 1 cut(s) | 203 |
| SaqAI | TTAA | 3 cut(s) | 756, 1076, 1178 |
| SatI | GCNGC | 2 cut(s) | 762, 830 |
| Sau3AI | GATC | 1 cut(s) | 1133 |
| Sau96I | GGNCC | 2 cut(s) | 698, 928 |
| ScaI | AGTACT | 1 cut(s) | 455 |
| SchI | GAGTC | 3 cut(s) | 279, 414, 700 |
| ScrFI | CCNGG | 3 cut(s) | 592, 696, 748 |
| SduI | GDGCHC | 4 cut(s) | 219, 255, 498, 1186 |
| SfaNI | GCATC | 1 cut(s) | 574 |
| SinI | GGWCC | 2 cut(s) | 698, 928 |
| SmlI | CTYRAG | 4 cut(s) | 245, 461, 491, 644 |
| SmoI | CTYRAG | 4 cut(s) | 245, 461, 491, 644 |
| Sse9I | AATT | 4 cut(s) | 169, 998, 1080, 1166 |
| SsiI | CCGC | 4 cut(s) | 139, 233, 601, 830 |
| SspMI | CTAG | 3 cut(s) | 341, 765, 971 |
| SstI | GAGCTC | 2 cut(s) | 219, 255 |
| StyD4I | CCNGG | 3 cut(s) | 590, 694, 746 |
| TaaI | ACNGT | 4 cut(s) | 230, 324, 1120, 1149 |
| TaiI | ACGT | 2 cut(s) | 307, 600 |
| TaqI | TCGA | 3 cut(s) | 175, 204, 614 |
| TasI | AATT | 4 cut(s) | 169, 998, 1080, 1166 |
| TatI | WGTACW | 2 cut(s) | 453, 549 |
| TauI | GCSGC | 1 cut(s) | 832 |
| Tru1I | TTAA | 3 cut(s) | 756, 1076, 1178 |
| Tru9I | TTAA | 3 cut(s) | 756, 1076, 1178 |
| TseFI | GTSAC | 2 cut(s) | 117, 271 |
| TseI | GCWGC | 1 cut(s) | 761 |
| Tsp45I | GTSAC | 2 cut(s) | 117, 271 |
| TspDTI | ATGAA | 3 cut(s) | 298, 1050, 1125 |
| TspGWI | ACGGA | 1 cut(s) | 976 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1129 |
| VneI | GTGCAC | 1 cut(s) | 1182 |
| VpaK11BI | GGWCC | 2 cut(s) | 698, 928 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 502 |
| XapI | RAATTY | 2 cut(s) | 998, 1166 |
| XmiI | GTMKAC | 1 cut(s) | 204 |
| XmnI | GAANNNNTTC | 1 cut(s) | 305 |
| XspI | CTAG | 3 cut(s) | 341, 765, 971 |
| ZrmI | AGTACT | 1 cut(s) | 455 |
| Zsp2I | ATGCAT | 1 cut(s) | 1198 |