Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007745

Physical Location & Seq

Genomic Coordinates Reverse (-)

27195099 .. 27196500

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1293700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCATCGGTTCAGAGGAAATATATGGGATTATGAGAGCCGACCTAAAGTCATGCGGACATTGGGATATCCCTTAGCAATGACTGATAGAATTCCAGACATTACTGCAGCTAGGAACATCGAACTTGGACTTGGGCTACAGCTTTCTTTCTTGCATCCATCGAAGCACAAATTTGAGCATCCTCGATTTTGTTACGAGCGTTTAGAATATGTTGGCCAAAAGATCCAGGACCTTGTGATGGCGGAAAGGTTGCTGATGAAACATTTAGATGCTCCTGGAAAGTGGTTAGCAGAGAGACATCGCCGTGTTCTCATGAACAAATTCTGCGGGAGATATTTGAGAGAGAAGCGTCTCCACCAGTTTATCATCTTCTCCGACCAAGTTCAGGATGCATATGAGCACAACCGAAGATTAAGAAATCCAGCCACAACCGCTGTTCAACAAGCCATTCATGGTCTCGCATACACAATATACGGGAAGCCAGATGTAAGACGCCTCATGTTTGAGGTTTTCGATTTTGAGCAAACCCAACCTAAAGCTGTGACTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0022613 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_3

Protein Analysis

184

Amino Acids

21.8

Weight (kDa)

9.82

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48121 AT2G48121 AT4G37510
fragaria_vesca	FvH4_1g17270 FvH4_1g17270
malus_domestica	MD15G1293700.v1.1
prunus_persica	Prupe.6G223800_v2.0.a1
pyrus_communis	pycom15g25680
rosa_chinensis	RchiOBHm_Chr2g0107461
rosa_laevigata	RLG00000017580
rosa_multiflora	Rmu_sc0005152.1_g000009 Rmu_sc0025013.1_g000002 Rmu_sc0039159.1_g000001 Rmu_sc0040873.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136320
rosa_rugosa	Rorug02G0143700 Rorug02G0143800
rosa_samantha	Rh2AG193900 Rh2AG299800 Rh2BG206100 Rh2CG199100 Rh2DG201100 Rh2DG323800
rosa_wichuraiana	Rw2G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	55, 242, 327, 432
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	3 cut(s)	90, 170, 320
AcyI	GRCGYC	1 cut(s)	493
AfiI	CCNNNNNNNGG	2 cut(s)	238, 385
AgsI	TTSAA	1 cut(s)	440
AhdI	GACNNNNNGTC	1 cut(s)	47
AjnI	CCWGG	2 cut(s)	225, 274
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	3 cut(s)	110, 142, 539
AluI	AGCT	3 cut(s)	110, 142, 539
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	3 cut(s)	289, 356, 461
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	3 cut(s)	90, 170, 320
Asp700I	GAANNNNTTC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	229
BalI	TGGCCA	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	2 cut(s)	166, 232
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	2 cut(s)	227, 276
BcoDI	GTCTC	3 cut(s)	289, 356, 461
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	2 cut(s)	105, 137
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	227, 276
Bme18I	GGWCC	1 cut(s)	229
BmeRI	GACNNNNNGTC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	227, 276
BmsI	GCATC	5 cut(s)	13, 163, 187, 259, 379
Bpu10I	CCTNAGC	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	493
BsaI	GGTCTC	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 385
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	227, 276
BseGI	GGATG	3 cut(s)	154, 178, 394
BseLI	CCNNNNNNNGG	2 cut(s)	238, 385
BseMI	GCAATG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	119
BshFI	GGCC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	402
BslI	CCNNNNNNNGG	2 cut(s)	238, 385
BsmAI	GTCTC	3 cut(s)	289, 356, 461
BsmBI	CGTCTC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	216
Bso31I	GGTCTC	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	222
BspACI	CCGC	4 cut(s)	55, 242, 327, 432
BspANI	GGCC	1 cut(s)	216
BspHI	TCATGA	1 cut(s)	312
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	358
BssMI	GATC	1 cut(s)	222
BssNI	GRCGYC	1 cut(s)	493
Bst2UI	CCWGG	2 cut(s)	227, 276
Bst4CI	ACNGT	1 cut(s)	547
BstACI	GRCGYC	1 cut(s)	493
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	3 cut(s)	154, 178, 394
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	3 cut(s)	289, 356, 461
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	2 cut(s)	227, 276
BstSCI	CCNGG	2 cut(s)	225, 274
BstSFI	CTRYAG	2 cut(s)	105, 137
BstV1I	GCAGC	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	216
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	3 cut(s)	154, 178, 394
CciI	TCATGA	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	229
CseI	GACGC	2 cut(s)	338, 501
CviAII	CATG	4 cut(s)	52, 313, 452, 499
CviJI	RGCY	9 cut(s)	39, 110, 136, 142, 216, 425, 446, 481, 539
CviKI_1	RGCY	9 cut(s)	39, 110, 136, 142, 216, 425, 446, 481, 539
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
DriI	GACNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	214
Eam1105I	GACNNNNNGTC	1 cut(s)	47
EciI	GGCGGA	1 cut(s)	257
Eco31I	GGTCTC	1 cut(s)	461
Eco32I	GATATC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	225, 274
EcoRV	GATATC	1 cut(s)	68
EcoT22I	ATGCAT	2 cut(s)	6, 394
Esp3I	CGTCTC	1 cut(s)	356
FaeI	CATG	4 cut(s)	55, 316, 455, 502
FatI	CATG	4 cut(s)	51, 312, 451, 498
FauI	CCCGC	1 cut(s)	320
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	3 cut(s)	141, 165, 401
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	216
HgaI	GACGC	2 cut(s)	338, 501
Hin1I	GRCGYC	1 cut(s)	493
Hin1II	CATG	4 cut(s)	55, 316, 455, 502
Hpy188I	TCNGA	2 cut(s)	14, 376
Hpy188III	TCNNGA	3 cut(s)	95, 313, 386
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4V	TGCA	4 cut(s)	4, 107, 154, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	1 cut(s)	73
Hsp92I	GRCGYC	1 cut(s)	493
Hsp92II	CATG	4 cut(s)	55, 316, 455, 502
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	9 cut(s)	108, 212, 239, 261, 288, 371, 371, 435, 495
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	5 cut(s)	13, 163, 187, 259, 379
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	191, 541
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	2 cut(s)	361, 420
MflI	RGATCY	1 cut(s)	222
MhlI	GDGCHC	1 cut(s)	402
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	3 cut(s)	90, 170, 320
MluNI	TGGCCA	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	4 cut(s)	8, 192, 499, 506
Mox20I	TGGCCA	1 cut(s)	216
Mph1103I	ATGCAT	2 cut(s)	6, 394
MroXI	GAANNNNTTC	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	1 cut(s)	413
MslI	CAYNNNNRTG	2 cut(s)	267, 303
Msp20I	TGGCCA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	227, 276
MvaI	CCWGG	2 cut(s)	227, 276
MwoI	GCNNNNNNNGC	1 cut(s)	431
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	4 cut(s)	55, 316, 455, 502
NmuCI	GTSAC	1 cut(s)	541
NsiI	ATGCAT	2 cut(s)	6, 394
PagI	TCATGA	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	320
PfoI	TCCNGGA	2 cut(s)	225, 274
PkrI	GCNGC	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	225, 274
PspGI	CCWGG	2 cut(s)	225, 274
PspPI	GGNCC	1 cut(s)	229
PspPPI	RGGWCCY	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	222
RseI	CAYNNNNRTG	2 cut(s)	267, 303
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	227, 276
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	8 cut(s)	46, 112, 144, 234, 251, 510, 535, 541
SfaNI	GCATC	5 cut(s)	13, 163, 187, 259, 379
SfcI	CTRYAG	2 cut(s)	105, 137
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	2 cut(s)	267, 303
Sse9I	AATT	3 cut(s)	90, 170, 320
SsiI	CCGC	4 cut(s)	55, 242, 327, 432
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	225, 274
TaaI	ACNGT	1 cut(s)	547
TaqI	TCGA	4 cut(s)	120, 161, 184, 513
TasI	AATT	3 cut(s)	90, 170, 320
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	3 cut(s)	272, 329, 440
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	3 cut(s)	90, 170, 320
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	1 cut(s)	111
Zsp2I	ATGCAT	2 cut(s)	6, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.