Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007745

Physical Location & Seq

Genomic Coordinates Forward (+)

12618598 .. 12620833

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0143700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTCAGTCCAGGCGGCAGACCATCGGCGTTAGAATTTCCTAGACATCGTCGACAGGCTTGTGGATTTGGTTTGCACGGAAGAGCTCCAAAGAAGGAGAATCCAAGCCGGGATGCTTCGGTGCTTCCGGCGGTTTCAACGCATGTTCCGGCGACACTGGTCAGCGTTGATGGTAAAGGAGGTATGAAACTAGATCCTCTTGATAAGATTTATGTGTTGTGGGGAGTGGGGTCTCTGAGCTTCTCGAAGCAACCTCGGTTTCGACTGGCAGCGACGCTTTTCCTTCGGCAAGGTGGCGATCGTGAAGCAGCGAGGCACGGCGGCTACGCGGGGCAGGTTCTCTACATCGATCGTGGTGGCAGCGAGAGCACTGTCGATTGTGATGGACGCGGGGAGGTTTCTCAGCGTCGATCTTGGTCTGGGGCTTCTCTGATCGCAGTTGCTGGGCTCGATTCCGTCTCTGTAGTGGTTTTGCTCAGGGGCGGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0022613 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_3

Protein Analysis

163

Amino Acids

17.29

Weight (kDa)

10.09

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48121 AT2G48121 AT4G37510
fragaria_vesca	FvH4_1g17270 FvH4_1g17270
malus_domestica	MD15G1293700.v1.1
prunus_persica	Prupe.6G223800_v2.0.a1
pyrus_communis	pycom15g25680
rosa_chinensis	RchiOBHm_Chr2g0107461
rosa_laevigata	RLG00000017580
rosa_multiflora	Rmu_sc0005152.1_g000009 Rmu_sc0025013.1_g000002 Rmu_sc0039159.1_g000001 Rmu_sc0040873.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136320
rosa_rugosa	Rorug02G0143700 Rorug02G0143800
rosa_samantha	Rh2AG193900 Rh2AG299800 Rh2BG206100 Rh2CG199100 Rh2DG201100 Rh2DG323800
rosa_wichuraiana	Rw2G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	52
AccII	CGCG	2 cut(s)	329, 390
AciI	CCGC	6 cut(s)	15, 131, 321, 329, 390, 483
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	2 cut(s)	86, 240
AluI	AGCT	2 cut(s)	86, 240
Alw21I	GWGCWC	2 cut(s)	88, 371
Alw26I	GTCTC	2 cut(s)	237, 463
AlwI	GGATC	1 cut(s)	188
AlwNI	CAGNNNCTG	1 cut(s)	443
ApeKI	GCWGC	3 cut(s)	269, 308, 360
ApoI	RAATTY	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	110
BanII	GRGCYC	2 cut(s)	88, 450
Bbv12I	GWGCWC	2 cut(s)	88, 371
BbvI	GCAGC	3 cut(s)	281, 320, 372
BccI	CCATC	3 cut(s)	31, 164, 377
BceAI	ACGGC	1 cut(s)	334
BciT130I	CCWGG	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	2 cut(s)	237, 463
BfaI	CTAG	2 cut(s)	42, 191
BfmI	CTRYAG	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	5 cut(s)	16, 270, 309, 322, 361
BlsI	GCNGC	5 cut(s)	17, 271, 310, 323, 362
Bme1390I	CCNGG	2 cut(s)	12, 110
BmrFI	CCNGG	2 cut(s)	12, 110
BmsI	GCATC	1 cut(s)	103
BoxI	GACNNNNGTC	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	110
Bsa29I	ATCGAT	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	162, 270
BseBI	CCWGG	1 cut(s)	12
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	118
BseMII	CTCAG	3 cut(s)	227, 416, 490
BseNI	ACTGG	2 cut(s)	162, 270
BseXI	GCAGC	3 cut(s)	281, 320, 372
BseYI	CCCAGC	1 cut(s)	443
Bsh1236I	CGCG	2 cut(s)	329, 390
Bsh1285I	CGRYCG	2 cut(s)	301, 352
BshVI	ATCGAT	1 cut(s)	348
BsiEI	CGRYCG	2 cut(s)	301, 352
BsiHKAI	GWGCWC	2 cut(s)	88, 371
BsiSI	CCGG	3 cut(s)	109, 128, 149
BsmAI	GTCTC	2 cut(s)	237, 463
BsmBI	CGTCTC	1 cut(s)	463
Bso31I	GGTCTC	1 cut(s)	237
Bsp1286I	GDGCHC	3 cut(s)	88, 371, 450
Bsp143I	GATC	5 cut(s)	193, 298, 349, 410, 432
BspACI	CCGC	6 cut(s)	15, 131, 321, 329, 390, 483
BspCNI	CTCAG	3 cut(s)	228, 415, 489
BspDI	ATCGAT	1 cut(s)	348
BspFNI	CGCG	2 cut(s)	329, 390
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	188
BspQI	GCTCTTC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	162, 270
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	5 cut(s)	193, 298, 349, 410, 432
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	1 cut(s)	76
BstDEI	CTNAG	3 cut(s)	236, 402, 476
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	2 cut(s)	329, 390
BstKTI	GATC	5 cut(s)	196, 301, 352, 413, 435
BstMAI	GTCTC	2 cut(s)	237, 463
BstMBI	GATC	5 cut(s)	193, 298, 349, 410, 432
BstMCI	CGRYCG	2 cut(s)	301, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	146
BstPAI	GACNNNNGTC	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	10, 108
BstSFI	CTRYAG	1 cut(s)	462
BstUI	CGCG	2 cut(s)	329, 390
BstV1I	GCAGC	3 cut(s)	281, 320, 372
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	348
BsuTUI	ATCGAT	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	2 cut(s)	155, 369
BveI	ACCTGC	1 cut(s)	325
CaiI	CAGNNNCTG	1 cut(s)	443
ClaI	ATCGAT	1 cut(s)	348
CseI	GACGC	3 cut(s)	283, 395, 396
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	7 cut(s)	59, 86, 108, 240, 324, 425, 448
CviKI_1	RGCY	7 cut(s)	59, 86, 108, 240, 324, 425, 448
DdeI	CTNAG	3 cut(s)	236, 402, 476
DpnI	GATC	5 cut(s)	195, 300, 351, 412, 434
DpnII	GATC	5 cut(s)	193, 298, 349, 410, 432
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	86
Eco24I	GRGCYC	2 cut(s)	88, 450
Eco31I	GGTCTC	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	10
EcoT38I	GRGCYC	2 cut(s)	88, 450
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	1 cut(s)	146
FaiI	YATR	3 cut(s)	144, 185, 213
FatI	CATG	1 cut(s)	142
FauI	CCCGC	3 cut(s)	322, 383, 476
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	5 cut(s)	16, 270, 309, 322, 361
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	2 cut(s)	88, 450
Fsp4HI	GCNGC	5 cut(s)	16, 270, 309, 322, 361
FspBI	CTAG	2 cut(s)	42, 191
GluI	GCNGC	5 cut(s)	16, 270, 309, 322, 361
GsaI	CCCAGC	1 cut(s)	447
HapII	CCGG	3 cut(s)	109, 128, 149
HgaI	GACGC	3 cut(s)	283, 395, 396
Hin1II	CATG	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HinfI	GANTC	2 cut(s)	100, 452
HpaII	CCGG	3 cut(s)	109, 128, 149
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	237, 432
Hpy188III	TCNNGA	3 cut(s)	200, 244, 302
Hpy8I	GTNNAC	1 cut(s)	53
Hpy99I	CGWCG	3 cut(s)	54, 277, 411
HpyAV	CCTTC	2 cut(s)	88, 293
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	3 cut(s)	236, 402, 476
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	5 cut(s)	193, 298, 349, 410, 432
LguI	GCTCTTC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	3 cut(s)	281, 320, 372
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	42, 191
MalI	GATC	5 cut(s)	195, 300, 351, 412, 434
MboI	GATC	5 cut(s)	193, 298, 349, 410, 432
MboII	GAAGA	1 cut(s)	93
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	3 cut(s)	88, 371, 450
MluCI	AATT	1 cut(s)	35
MnlI	CCTC	5 cut(s)	173, 207, 264, 306, 388
MspI	CCGG	3 cut(s)	109, 128, 149
MspR9I	CCNGG	2 cut(s)	12, 110
MvaI	CCWGG	1 cut(s)	12
MvnI	CGCG	2 cut(s)	329, 390
MwoI	GCNNNNNNNGC	1 cut(s)	366
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	5 cut(s)	193, 298, 349, 410, 432
NlaIII	CATG	1 cut(s)	146
NspI	RCATGY	1 cut(s)	146
PciSI	GCTCTTC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	100, 452
PflFI	GACNNNGTC	1 cut(s)	48
PkrI	GCNGC	5 cut(s)	17, 271, 310, 323, 362
Ple19I	CGATCG	2 cut(s)	301, 352
PshAI	GACNNNNGTC	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	10
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	193
PsyI	GACNNNGTC	1 cut(s)	48
PvuI	CGATCG	2 cut(s)	301, 352
SacI	GAGCTC	1 cut(s)	88
SalI	GTCGAC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	76
SatI	GCNGC	5 cut(s)	16, 270, 309, 322, 361
Sau3AI	GATC	5 cut(s)	193, 298, 349, 410, 432
ScrFI	CCNGG	2 cut(s)	12, 110
SduI	GDGCHC	3 cut(s)	88, 371, 450
SetI	ASST	7 cut(s)	88, 184, 242, 256, 295, 339, 399
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	462
Sse9I	AATT	1 cut(s)	35
SsiI	CCGC	6 cut(s)	15, 131, 321, 329, 390, 483
SspMI	CTAG	2 cut(s)	42, 191
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	2 cut(s)	10, 108
TaaI	ACNGT	1 cut(s)	373
TaqI	TCGA	7 cut(s)	52, 245, 262, 348, 375, 409, 450
TasI	AATT	1 cut(s)	35
TauI	GCSGC	2 cut(s)	18, 324
TfiI	GAWTC	2 cut(s)	100, 452
TscAI	CASTG	2 cut(s)	162, 376
TseI	GCWGC	3 cut(s)	269, 308, 360
TspDTI	ATGAA	1 cut(s)	200
TspGWI	ACGGA	2 cut(s)	93, 445
TspRI	CASTG	2 cut(s)	162, 376
Tth111I	GACNNNGTC	1 cut(s)	48
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	2 cut(s)	42, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.