Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007745

Physical Location & Seq

Genomic Coordinates Reverse (-)

40664415 .. 40665735

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG323800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTATTTATCTTCTCAATGTTGCTTGGTTCTGGCAAATAACGTGTATACTCCTCTGCAGCCCCCAGAAGATGCTCTGTTTGCACATCTGAGGCTCTTTAGGGCTTGTGTTCCACCAGGTATGCATCGGTTTAGAGGAAATATATGGGATTATGAGAGCAGACCACAAGTCATGCGAGCATTGGGATATCCCTTAAAGATGTCAGATAGAATTCCAGACATTACTGAGGCAAGGAACATCGAACTTGGACTTGGGCTACAGCTTGCTTTCTTGCATCCATCGAAGCACAAATTTGAGCACCCTCGTTTTTGTTATGAGCGATTAGAATATGTTGGCCAAAAAATCCAGGACCTTGTGATGGCTGAAAGATTGCTGATGAAACATTTAGATGCTCCTGGAAAGTGGCTGGCAGAGAGACACCGCCGAACAATTGGGGCATCAAACAATTTAGTGCAGCAAAATGCAAATGTACCAACACCCTCAATTGTTGCAAGTGCTTCATCTCAACCGATGATCTCATCACCACCTCTACCTCAGTCTTCTTCGCAGCCCACTGTTATCGGATCATCTCATACATCCAATACATTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0022613 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_3

Protein Analysis

197

Amino Acids

22.2

Weight (kDa)

9.18

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48121 AT2G48121 AT4G37510
fragaria_vesca	FvH4_1g17270 FvH4_1g17270
malus_domestica	MD15G1293700.v1.1
prunus_persica	Prupe.6G223800_v2.0.a1
pyrus_communis	pycom15g25680
rosa_chinensis	RchiOBHm_Chr2g0107461
rosa_laevigata	RLG00000017580
rosa_multiflora	Rmu_sc0005152.1_g000009 Rmu_sc0025013.1_g000002 Rmu_sc0039159.1_g000001 Rmu_sc0040873.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136320
rosa_rugosa	Rorug02G0143700 Rorug02G0143800
rosa_samantha	Rh2AG193900 Rh2AG299800 Rh2BG206100 Rh2CG199100 Rh2DG201100 Rh2DG323800
rosa_wichuraiana	Rw2G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	47
AciI	CCGC	1 cut(s)	421
AclWI	GGATC	1 cut(s)	571
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	2 cut(s)	210, 290
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	1 cut(s)	358
AflIII	ACRYGT	1 cut(s)	42
AhdI	GACNNNNNGTC	1 cut(s)	167
AjnI	CCWGG	3 cut(s)	115, 345, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	1 cut(s)	571
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	3 cut(s)	58, 454, 547
ApoI	RAATTY	2 cut(s)	210, 290
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	513
AvaII	GGWCC	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	70, 466, 559
BccI	CCATC	2 cut(s)	286, 352
BciT130I	CCWGG	3 cut(s)	117, 347, 396
BcoDI	GTCTC	1 cut(s)	409
BfmI	CTRYAG	2 cut(s)	56, 257
BisI	GCNGC	3 cut(s)	59, 455, 548
BlsI	GCNGC	3 cut(s)	60, 456, 549
Bme1390I	CCNGG	3 cut(s)	117, 347, 396
Bme18I	GGWCC	1 cut(s)	349
BmeRI	GACNNNNNGTC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	349
BmrFI	CCNGG	3 cut(s)	117, 347, 396
BmsI	GCATC	5 cut(s)	61, 133, 283, 379, 446
BpiI	GAAGAC	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
BseBI	CCWGG	3 cut(s)	117, 347, 396
BseGI	GGATG	2 cut(s)	274, 575
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	3 cut(s)	80, 216, 548
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	3 cut(s)	70, 466, 559
BsgI	GTGCAG	1 cut(s)	473
BshFI	GGCC	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	513, 563
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	3 cut(s)	81, 217, 547
BspMAI	CTGCAG	1 cut(s)	60
BspPI	GGATC	1 cut(s)	571
BssMI	GATC	2 cut(s)	513, 563
BssNAI	GTATAC	1 cut(s)	48
Bst1107I	GTATAC	1 cut(s)	48
Bst2UI	CCWGG	3 cut(s)	117, 347, 396
Bst4CI	ACNGT	1 cut(s)	556
BstC8I	GCNNGC	3 cut(s)	177, 264, 408
BstDEI	CTNAG	3 cut(s)	89, 225, 534
BstF5I	GGATG	2 cut(s)	274, 575
BstKTI	GATC	2 cut(s)	516, 566
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	2 cut(s)	513, 563
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	3 cut(s)	117, 347, 396
BstSCI	CCNGG	3 cut(s)	115, 345, 394
BstSFI	CTRYAG	2 cut(s)	56, 257
BstV1I	GCAGC	3 cut(s)	70, 466, 559
BstV2I	GAAGAC	1 cut(s)	531
BstZ17I	GTATAC	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	274, 575
BtsIMutI	CAGTG	1 cut(s)	552
Cac8I	GCNNGC	3 cut(s)	177, 264, 408
Cfr13I	GGNCC	1 cut(s)	349
CsiI	ACCWGGT	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	9 cut(s)	61, 94, 104, 256, 262, 336, 362, 406, 550
CviKI_1	RGCY	9 cut(s)	61, 94, 104, 256, 262, 336, 362, 406, 550
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	3 cut(s)	89, 225, 534
DpnI	GATC	2 cut(s)	515, 565
DpnII	GATC	2 cut(s)	513, 563
DriI	GACNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	334
Eam1105I	GACNNNNNGTC	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	349
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	3 cut(s)	115, 345, 394
EcoRV	GATATC	1 cut(s)	188
EcoT22I	ATGCAT	1 cut(s)	126
FaeI	CATG	1 cut(s)	175
FatI	CATG	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	3 cut(s)	59, 455, 548
FokI	GGATG	2 cut(s)	261, 562
Fsp4HI	GCNGC	3 cut(s)	59, 455, 548
GluI	GCNGC	3 cut(s)	59, 455, 548
HaeIII	GGCC	1 cut(s)	336
Hin1II	CATG	1 cut(s)	175
HphI	GGTGA	1 cut(s)	513
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	3 cut(s)	90, 205, 563
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	48
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	7 cut(s)	58, 83, 124, 274, 454, 464, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	3 cut(s)	89, 225, 534
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	513, 563
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	3 cut(s)	70, 466, 559
LweI	GCATC	5 cut(s)	61, 133, 283, 379, 446
MabI	ACCWGGT	1 cut(s)	115
MaeII	ACGT	1 cut(s)	42
MalI	GATC	2 cut(s)	515, 565
MboI	GATC	2 cut(s)	513, 563
MboII	GAAGA	4 cut(s)	3, 80, 531, 534
MfeI	CAATTG	2 cut(s)	429, 483
MhlI	GDGCHC	1 cut(s)	300
MlsI	TGGCCA	1 cut(s)	336
MluCI	AATT	5 cut(s)	210, 290, 429, 445, 483
MluNI	TGGCCA	1 cut(s)	336
MnlI	CCTC	8 cut(s)	63, 84, 128, 220, 312, 490, 537, 543
Mox20I	TGGCCA	1 cut(s)	336
Mph1103I	ATGCAT	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	336
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	2 cut(s)	387, 589
Msp20I	TGGCCA	1 cut(s)	336
MspR9I	CCNGG	3 cut(s)	117, 347, 396
MunI	CAATTG	2 cut(s)	429, 483
MvaI	CCWGG	3 cut(s)	117, 347, 396
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	2 cut(s)	513, 563
NlaIII	CATG	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	126
PfoI	TCCNGGA	2 cut(s)	345, 394
PkrI	GCNGC	3 cut(s)	60, 456, 549
PpuMI	RGGWCCY	1 cut(s)	349
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	3 cut(s)	115, 345, 394
PspGI	CCWGG	3 cut(s)	115, 345, 394
PspPI	GGNCC	1 cut(s)	349
PspPPI	RGGWCCY	1 cut(s)	349
PstI	CTGCAG	1 cut(s)	60
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
RseI	CAYNNNNRTG	2 cut(s)	387, 589
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	3 cut(s)	59, 455, 548
Sau3AI	GATC	2 cut(s)	513, 563
Sau96I	GGNCC	1 cut(s)	349
ScrFI	CCNGG	3 cut(s)	117, 347, 396
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	6 cut(s)	45, 121, 264, 354, 529, 535
SexAI	ACCWGGT	1 cut(s)	115
SfaNI	GCATC	5 cut(s)	61, 133, 283, 379, 446
SfcI	CTRYAG	2 cut(s)	56, 257
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	2 cut(s)	387, 589
Sse9I	AATT	5 cut(s)	210, 290, 429, 445, 483
SsiI	CCGC	1 cut(s)	421
StyD4I	CCNGG	3 cut(s)	115, 345, 394
TaaI	ACNGT	1 cut(s)	556
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	2 cut(s)	240, 281
TasI	AATT	5 cut(s)	210, 290, 429, 445, 483
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	559
TseI	GCWGC	3 cut(s)	58, 454, 547
TspDTI	ATGAA	2 cut(s)	392, 489
TspRI	CASTG	1 cut(s)	559
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	2 cut(s)	210, 290
XmiI	GTMKAC	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.