Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007745

Physical Location & Seq

Genomic Coordinates Reverse (-)

12632402 .. 12635044

Gene Structure 2643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0143800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGGCGAAGAGTTTAGCTCTAACAGCGATCACGTTGCTGGTGTTATGGCTGGCTATGTCGGTTGGGACTTGGGCTGAGGAAAGTGAATCATGGACTGGATGGCTTTCAAAGTCGCCCGGATTCAGGCATGACAATGAAGTAAACCAAGCTAATACTGCTTCTGGTCCATCGGCGCAAGGGAGTTCTCAAAATATGGATTTTTTGCTAGCGGTTCAACAAAAATTACAGGTAGCTTTTCAGGCCATTCAACAAGGAAAAAAAGATGAAGGTCAAGAGATGCTGAAAGTTATTGTCACAATTCTTATGCGGGAAAAATCTTTAACTATAGAACAAAAAGAAGCTAAACTTACCGAGTTTGTGAAGAATGCTGAGAAGTCACTCAATCCAGACACTCAAGTGATTGCTGAACAATTCCTTCTAGGAGCAAAAGTGGGACTAAAGATTAATCAAGCACAGCCAGGTGATACTGCTTCCGGTCCATCCGCTCAGGGAAGTTCTCAAAGTACGGATGTTTTGCTAGCAGTCCAACAAAAATTAGAAGCAGCTTTTCAGGCCATTCAGCAAGGACAACAAGCTCAAGGTCAAGAGATGCTTGTAGATGCTACCGTTGCTCTTAAACAGGAAAAATCTTTAACTGTCGAACAAAAATCAGCTAAACTTACCGAGTTCGTGAAGAATGCAGAGAAGTCACTCAATAAAGAGACTCAAGAGATTGCTGAACAATTCCTTCTCGGCGCACAAGTGGGATTCAAGATTAATCAGCAACACCAAGCTAATACTGCTTCTAGTCCATCCGCTCAGGGGAGTTCTCAAAATACAGATTTTTTGCTAGCGGTTCAACAAAAATTACAAGTAGCTTTTCAAGCCATTCAACAAGGAAAAAAAGATGAAGGACAAGAGATGCTTAAAGTTATTGTCACAATTCTTATGCGGGAAAAATCTTTAACTATCGAACAAAAAGAAGCTAGACTTACTGAGTTCGTGAAGAATGCTGAGAAGTCACTCAATCCAGAGACTCAAGTGATTGCCGAACAATTCCTTCTAGGAGCAAAAGTGGGACTAAAGATTAATCAGCCACACCCAGATGATACTACTTCTGATCCACCCGCTTCGGGAAGTTCTCAAAGTACAGATGTTTTGCTAGCGGTCCAACAAAAATTAGAAGCAGCTTTTCAGGCCATTCAGCAAGGACAACAAGCTCAAGGTCAAGAGATGCTTGTAGATGCTACCGTTGCTCTTAAACAGGAAAAATCTTTAACTGTCGAACAAAAATCAGCTAAACTTACCGAGTTCGTGAAGAATGCAGAGAAGTCACTCAATAAAGAGACTCAAGAGATTGCTGAACAATTCCTTCTCGGCGCACAAGTGGGATTCAAGATTAATCAGCAACACCAAGCTAATACTGCTTCTAGTCCATCCACTCAGGGGAGTTCTCAAAATACGATTTTTTTGCTAGCGGTTCAACAAAAATTACATGTAGCTTTTCAGGCCATTCAACAGGGAAAAAAAGATGAAGGACAAGAGATGCTTAAAGTTATTGTCACAATTCTTATGCGGGAAAAATCTTTAACTATCGAACAAAAAGCAGCTAAACTTACCGAATTCGTGAAGAATGCTGAGAAGTCACTCAATCCAGAGACTCAAGTGATTGCTGAACAATTCCTTCTAGGAGCAAAAGTGGGACTAAAGATTAATCAACCACACCAAGATGATACTACTTCCGATCCATCCGCTCCGCGAAGTTCTCAAAGTACAGATGTTTTGCTAGCGACCCAACAAAAATTAGAAGCAGCTTTTCAGGCCATTCAACAAGGACAACAAGCTCAAGGTCAAGAGATGCTCGTAGATGCTACCGTTGGTCTAAAACAGGAAAAATCTTTAACTGTCGAACAAAAAGCAGCTAAACTTACCGAGTTCGTGAAGAATGCTGAGAAGTCACTCAATAAAGAAACTCAAGAAATTGCTGAAAAATTTCTTGAAGGCGCACAAGTGGGATTCAAGATTAATCAGCAACACAAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0022613 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_3

Protein Analysis

674

Amino Acids

73.62

Weight (kDa)

5.7

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48121 AT2G48121 AT4G37510
fragaria_vesca	FvH4_1g17270 FvH4_1g17270
malus_domestica	MD15G1293700.v1.1
prunus_persica	Prupe.6G223800_v2.0.a1
pyrus_communis	pycom15g25680
rosa_chinensis	RchiOBHm_Chr2g0107461
rosa_laevigata	RLG00000017580
rosa_multiflora	Rmu_sc0005152.1_g000009 Rmu_sc0025013.1_g000002 Rmu_sc0039159.1_g000001 Rmu_sc0040873.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136320
rosa_rugosa	Rorug02G0143700 Rorug02G0143800
rosa_samantha	Rh2AG193900 Rh2AG299800 Rh2BG206100 Rh2CG199100 Rh2DG201100 Rh2DG323800
rosa_wichuraiana	Rw2G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	485, 797, 1733
AccII	CGCG	1 cut(s)	1738
AclWI	GGATC	2 cut(s)	1094, 1718
AcsI	RAATTY	2 cut(s)	1601, 1970
AfaI	GTAC	3 cut(s)	505, 1129, 1753
AfiI	CCNNNNNNNGG	4 cut(s)	123, 801, 1112, 1425
AflIII	ACRYGT	1 cut(s)	1474
AjnI	CCWGG	1 cut(s)	457
AleI	CACNNNNGTG	1 cut(s)	395
Alw26I	GTCTC	4 cut(s)	695, 1007, 1319, 1631
AlwI	GGATC	2 cut(s)	1094, 1718
AoxI	GGCC	5 cut(s)	240, 552, 1176, 1488, 1800
ApeKI	GCWGC	5 cut(s)	542, 1166, 1586, 1790, 1898
ApoI	RAATTY	2 cut(s)	1601, 1970
AseI	ATTAAT	6 cut(s)	444, 756, 1068, 1380, 1692, 2004
Asp700I	GAANNNNTTC	1 cut(s)	1971
AspLEI	GCGC	4 cut(s)	175, 737, 1361, 1985
AspS9I	GGNCC	3 cut(s)	164, 476, 1147
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	473
AsuNHI	GCTAGC	6 cut(s)	205, 517, 829, 1141, 1453, 1765
AvaII	GGWCC	3 cut(s)	164, 476, 1147
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	5 cut(s)	554, 1178, 1598, 1802, 1910
BccI	CCATC	6 cut(s)	93, 175, 487, 799, 1423, 1735
BcgI	CGANNNNNNTGC	4 cut(s)	16, 50, 1432, 1466
BciT130I	CCWGG	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	4 cut(s)	695, 1007, 1319, 1631
BfmI	CTRYAG	1 cut(s)	324
BisI	GCNGC	5 cut(s)	543, 1167, 1587, 1791, 1899
BlsI	GCNGC	5 cut(s)	544, 1168, 1588, 1792, 1900
Bme1390I	CCNGG	2 cut(s)	117, 459
Bme18I	GGWCC	3 cut(s)	164, 476, 1147
BmgT120I	GGNCC	3 cut(s)	164, 476, 1147
BmrFI	CCNGG	2 cut(s)	117, 459
BmsI	GCATC	9 cut(s)	267, 579, 589, 891, 1203, 1213, 1515, 1827, 1837
BmtI	GCTAGC	6 cut(s)	209, 521, 833, 1145, 1457, 1769
BplI	GAGNNNNNCTC	1 cut(s)	33
Bpu10I	CCTNAGC	3 cut(s)	75, 486, 798
BpuEI	CTTGAG	9 cut(s)	378, 561, 690, 1002, 1185, 1314, 1626, 1809, 1938
BpuMI	CCSGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	473
BsaXI	ACNNNNNCTCC	6 cut(s)	414, 444, 1038, 1068, 1662, 1692
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 801, 1112, 1425
Bse1I	ACTGG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	459
BseGI	GGATG	6 cut(s)	104, 479, 514, 791, 1415, 1727
BseLI	CCNNNNNNNGG	4 cut(s)	123, 801, 1112, 1425
BseMII	CTCAG	9 cut(s)	66, 360, 500, 812, 966, 984, 1436, 1608, 1920
BseNI	ACTGG	1 cut(s)	100
BseXI	GCAGC	5 cut(s)	554, 1178, 1598, 1802, 1910
Bsh1236I	CGCG	1 cut(s)	1738
BshFI	GGCC	5 cut(s)	242, 554, 1178, 1490, 1802
BsiSI	CCGG	2 cut(s)	117, 474
BslFI	GGGAC	4 cut(s)	79, 447, 1071, 1695
BslI	CCNNNNNNNGG	4 cut(s)	123, 801, 1112, 1425
BsmAI	GTCTC	4 cut(s)	695, 1007, 1319, 1631
BsmFI	GGGAC	4 cut(s)	79, 447, 1071, 1695
BsmI	GAATGC	6 cut(s)	370, 682, 994, 1306, 1618, 1930
BsnI	GGCC	5 cut(s)	242, 554, 1178, 1490, 1802
Bsp143I	GATC	3 cut(s)	27, 1099, 1723
BspANI	GGCC	5 cut(s)	242, 554, 1178, 1490, 1802
BspCNI	CTCAG	9 cut(s)	67, 361, 499, 811, 967, 985, 1435, 1609, 1921
BspFNI	CGCG	1 cut(s)	1738
BspOI	GCTAGC	6 cut(s)	209, 521, 833, 1145, 1457, 1769
BspPI	GGATC	2 cut(s)	1094, 1718
BsrBI	CCGCTC	3 cut(s)	485, 797, 1733
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	3 cut(s)	27, 1099, 1723
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	6 cut(s)	607, 637, 1231, 1261, 1855, 1885
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	7 cut(s)	51, 207, 519, 831, 1143, 1455, 1767
BstDEI	CTNAG	9 cut(s)	75, 369, 486, 798, 975, 993, 1422, 1617, 1929
BstF5I	GGATG	6 cut(s)	104, 479, 514, 791, 1415, 1727
BstFNI	CGCG	1 cut(s)	1738
BstHHI	GCGC	4 cut(s)	175, 737, 1361, 1985
BstKTI	GATC	3 cut(s)	30, 1102, 1726
BstMAI	GTCTC	4 cut(s)	695, 1007, 1319, 1631
BstMBI	GATC	3 cut(s)	27, 1099, 1723
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	1478
BstSCI	CCNGG	2 cut(s)	115, 457
BstSFI	CTRYAG	1 cut(s)	324
BstUI	CGCG	1 cut(s)	1738
BstV1I	GCAGC	5 cut(s)	554, 1178, 1598, 1802, 1910
BsuRI	GGCC	5 cut(s)	242, 554, 1178, 1490, 1802
BtsCI	GGATG	6 cut(s)	104, 479, 514, 791, 1415, 1727
Cac8I	GCNNGC	7 cut(s)	51, 207, 519, 831, 1143, 1455, 1767
CfoI	GCGC	4 cut(s)	175, 737, 1361, 1985
Cfr13I	GGNCC	3 cut(s)	164, 476, 1147
Csp6I	GTAC	3 cut(s)	504, 1128, 1752
CviAII	CATG	3 cut(s)	90, 128, 1475
CviQI	GTAC	3 cut(s)	504, 1128, 1752
DdeI	CTNAG	9 cut(s)	75, 369, 486, 798, 975, 993, 1422, 1617, 1929
DpnI	GATC	3 cut(s)	29, 1101, 1725
DpnII	GATC	3 cut(s)	27, 1099, 1723
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco47I	GGWCC	3 cut(s)	164, 476, 1147
EcoRI	GAATTC	1 cut(s)	1601
EcoRII	CCWGG	1 cut(s)	457
FaeI	CATG	3 cut(s)	93, 131, 1478
FaqI	GGGAC	4 cut(s)	79, 447, 1071, 1695
FatI	CATG	3 cut(s)	89, 127, 1474
FauI	CCCGC	4 cut(s)	300, 924, 1114, 1548
Fnu4HI	GCNGC	5 cut(s)	543, 1167, 1587, 1791, 1899
FokI	GGATG	6 cut(s)	111, 466, 521, 778, 1402, 1714
Fsp4HI	GCNGC	5 cut(s)	543, 1167, 1587, 1791, 1899
GlaI	GCGC	4 cut(s)	174, 736, 1360, 1984
GluI	GCNGC	5 cut(s)	543, 1167, 1587, 1791, 1899
HaeIII	GGCC	5 cut(s)	242, 554, 1178, 1490, 1802
HapII	CCGG	2 cut(s)	117, 474
HhaI	GCGC	4 cut(s)	175, 737, 1361, 1985
Hin1II	CATG	3 cut(s)	93, 131, 1478
Hin6I	GCGC	4 cut(s)	173, 735, 1359, 1983
HinP1I	GCGC	4 cut(s)	173, 735, 1359, 1983
HinfI	GANTC	9 cut(s)	86, 120, 703, 747, 1015, 1327, 1371, 1639, 1995
HpaII	CCGG	2 cut(s)	117, 474
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	1099, 1723
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	9 cut(s)	260, 425, 737, 884, 1049, 1361, 1508, 1673, 1973
HpyCH4III	ACNGT	6 cut(s)	607, 637, 1231, 1261, 1855, 1885
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	680, 1304
HpyF3I	CTNAG	9 cut(s)	75, 369, 486, 798, 975, 993, 1422, 1617, 1929
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	3 cut(s)	93, 131, 1478
HspAI	GCGC	4 cut(s)	173, 735, 1359, 1983
Kzo9I	GATC	3 cut(s)	27, 1099, 1723
LmnI	GCTCC	4 cut(s)	422, 1046, 1670, 1738
Lsp1109I	GCAGC	5 cut(s)	554, 1178, 1598, 1802, 1910
LweI	GCATC	9 cut(s)	267, 579, 589, 891, 1203, 1213, 1515, 1827, 1837
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	9 cut(s)	292, 375, 687, 916, 999, 1311, 1540, 1623, 1935
MalI	GATC	3 cut(s)	29, 1101, 1725
MbiI	CCGCTC	3 cut(s)	485, 797, 1733
MboI	GATC	3 cut(s)	27, 1099, 1723
MboII	GAAGA	7 cut(s)	19, 373, 685, 997, 1309, 1621, 1933
MlyI	GAGTC	4 cut(s)	697, 1009, 1321, 1633
MmeI	TCCRAC	2 cut(s)	550, 1174
MnlI	CCTC	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	1971
MslI	CAYNNNNRTG	4 cut(s)	132, 395, 1083, 1707
MspI	CCGG	2 cut(s)	117, 474
MspR9I	CCNGG	2 cut(s)	117, 459
Mva1269I	GAATGC	6 cut(s)	370, 682, 994, 1306, 1618, 1930
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	1738
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	3 cut(s)	27, 1099, 1723
NheI	GCTAGC	6 cut(s)	205, 517, 829, 1141, 1453, 1765
NlaIII	CATG	3 cut(s)	93, 131, 1478
NmeAIII	GCCGAG	2 cut(s)	711, 1335
NmuCI	GTSAC	9 cut(s)	292, 375, 687, 916, 999, 1311, 1540, 1623, 1935
NspI	RCATGY	1 cut(s)	1478
OliI	CACNNNNGTG	1 cut(s)	395
PciI	ACATGT	1 cut(s)	1474
PctI	GAATGC	6 cut(s)	370, 682, 994, 1306, 1618, 1930
PdmI	GAANNNNTTC	1 cut(s)	1971
PfeI	GAWTC	5 cut(s)	86, 120, 747, 1371, 1995
PkrI	GCNGC	5 cut(s)	544, 1168, 1588, 1792, 1900
PleI	GAGTC	4 cut(s)	697, 1009, 1321, 1633
PpsI	GAGTC	4 cut(s)	697, 1009, 1321, 1633
PscI	ACATGT	1 cut(s)	1474
PshBI	ATTAAT	6 cut(s)	444, 756, 1068, 1380, 1692, 2004
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspPI	GGNCC	3 cut(s)	164, 476, 1147
RsaI	GTAC	3 cut(s)	505, 1129, 1753
RsaNI	GTAC	3 cut(s)	504, 1128, 1752
RseI	CAYNNNNRTG	4 cut(s)	132, 395, 1083, 1707
SatI	GCNGC	5 cut(s)	543, 1167, 1587, 1791, 1899
Sau3AI	GATC	3 cut(s)	27, 1099, 1723
Sau96I	GGNCC	3 cut(s)	164, 476, 1147
SchI	GAGTC	4 cut(s)	697, 1009, 1321, 1633
ScrFI	CCNGG	2 cut(s)	117, 459
SfaNI	GCATC	9 cut(s)	267, 579, 589, 891, 1203, 1213, 1515, 1827, 1837
SfcI	CTRYAG	1 cut(s)	324
SinI	GGWCC	3 cut(s)	164, 476, 1147
SmiMI	CAYNNNNRTG	4 cut(s)	132, 395, 1083, 1707
SmlI	CTYRAG	9 cut(s)	393, 576, 705, 1017, 1200, 1329, 1641, 1824, 1953
SmoI	CTYRAG	9 cut(s)	393, 576, 705, 1017, 1200, 1329, 1641, 1824, 1953
StyD4I	CCNGG	2 cut(s)	115, 457
TaaI	ACNGT	6 cut(s)	607, 637, 1231, 1261, 1855, 1885
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	5 cut(s)	639, 951, 1263, 1575, 1887
TatI	WGTACW	2 cut(s)	1127, 1751
TfiI	GAWTC	5 cut(s)	86, 120, 747, 1371, 1995
TseFI	GTSAC	9 cut(s)	292, 375, 687, 916, 999, 1311, 1540, 1623, 1935
TseI	GCWGC	5 cut(s)	542, 1166, 1586, 1790, 1898
Tsp45I	GTSAC	9 cut(s)	292, 375, 687, 916, 999, 1311, 1540, 1623, 1935
TspDTI	ATGAA	4 cut(s)	150, 279, 903, 1527
TspGWI	ACGGA	1 cut(s)	521
VpaK11BI	GGWCC	3 cut(s)	164, 476, 1147
VspI	ATTAAT	6 cut(s)	444, 756, 1068, 1380, 1692, 2004
XapI	RAATTY	2 cut(s)	1601, 1970
XceI	RCATGY	1 cut(s)	1478
XmnI	GAANNNNTTC	1 cut(s)	1971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.