Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025013.1

Orthogroup ID

OG0007745

Physical Location & Seq

Genomic Coordinates Forward (+)

3969 .. 4772

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025013.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atggaactctcttcaaccttcacacaggtctcaaccccatcctcctcctacaacacttactctttctcttcttccttgtcacctttcccaacccaaatccgcctcataacccccaaatcccacaaccccaattctcgaaacttccgagttctcgccgtcgcagtcgacccacaagagctccccaagaacagtccccagaggctcctcaaggagctctcagagcgcaaaagagtcacttctcccaagaaaaaagtacccccgaaacgtttcatactccggccaccgttagatgacaacagactagctcagaggttcctcaacagcccacaactctcactcaaatcctttcctttgctcagttcttgcttaccctcttcgcgactcaacaatgccgataaggcgtggatagatgagtacttacttgaggctaagcaagctcttgggtacccacttgagccctctgagaggttaggggatgataacccagctaagcagtttgatacattgctgtacatggcgtttcagcatcccagttgtgagaggactaatgcccggcacgtgcggtctgcgcattcgaggctgtggtttctggggcagtatgtgcttgagttgggtttggctgagtttttcttgcagaggtatccgagggagagtcctggtcctatgagggagagggtgtttgcgttgattgggaagaggtacttgcccaggtggattaaggctgctagcttgcagaacttggtgtttccttttgatgatatggacaagttgcagaggaaggagagagagccgcctgtcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0022613 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_3

Protein Analysis

267

Amino Acids

30.84

Weight (kDa)

9.96

Isoelectric Point (pI)

60.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48121 AT2G48121 AT4G37510
fragaria_vesca	FvH4_1g17270 FvH4_1g17270
malus_domestica	MD15G1293700.v1.1
prunus_persica	Prupe.6G223800_v2.0.a1
pyrus_communis	pycom15g25680
rosa_chinensis	RchiOBHm_Chr2g0107461
rosa_laevigata	RLG00000017580
rosa_multiflora	Rmu_sc0005152.1_g000009 Rmu_sc0025013.1_g000002 Rmu_sc0039159.1_g000001 Rmu_sc0040873.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136320
rosa_rugosa	Rorug02G0143700 Rorug02G0143800
rosa_samantha	Rh2AG193900 Rh2AG299800 Rh2BG206100 Rh2CG199100 Rh2DG201100 Rh2DG323800
rosa_wichuraiana	Rw2G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	570
Acc65I	GGTACC	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	379
AciI	CCGC	3 cut(s)	100, 562, 791
AclI	AACGTT	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	278
AcvI	CACGTG	1 cut(s)	559
AfaI	GTAC	5 cut(s)	255, 416, 446, 512, 701
AfiI	CCNNNNNNNGG	1 cut(s)	465
AgsI	TTSAA	1 cut(s)	15
AjnI	CCWGG	2 cut(s)	655, 707
AluBI	AGCT	6 cut(s)	178, 214, 305, 437, 488, 729
AluI	AGCT	6 cut(s)	178, 214, 305, 437, 488, 729
Alw21I	GWGCWC	2 cut(s)	180, 216
Alw26I	GTCTC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	722
Asp700I	GAANNNNTTC	1 cut(s)	266
Asp718I	GGTACC	1 cut(s)	444
AspLEI	GCGC	2 cut(s)	225, 571
AspS9I	GGNCC	1 cut(s)	659
AsuC2I	CCSGG	1 cut(s)	553
AsuHPI	GGTGA	1 cut(s)	72
AsuNHI	GCTAGC	1 cut(s)	725
AvaII	GGWCC	1 cut(s)	659
BanI	GGYRCC	1 cut(s)	444
BanII	GRGCYC	3 cut(s)	180, 216, 459
BbrPI	CACGTG	1 cut(s)	559
Bbv12I	GWGCWC	2 cut(s)	180, 216
BbvI	GCAGC	1 cut(s)	709
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	2 cut(s)	657, 709
BciVI	GTATCC	1 cut(s)	651
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	2 cut(s)	302, 726
BfuI	GTATCC	1 cut(s)	651
BglI	GCCNNNNNGGC	1 cut(s)	398
BisI	GCNGC	2 cut(s)	723, 791
BlpI	GCTNAGC	2 cut(s)	429, 489
BlsI	GCNGC	2 cut(s)	724, 792
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	3 cut(s)	553, 657, 709
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	659
BmiI	GGNNCC	3 cut(s)	203, 314, 446
BmrFI	CCNGG	3 cut(s)	553, 657, 709
BmrI	ACTGGG	1 cut(s)	525
BmsI	GCATC	1 cut(s)	535
BmtI	GCTAGC	1 cut(s)	729
BmuI	ACTGGG	1 cut(s)	525
Bpu1102I	GCTNAGC	2 cut(s)	429, 489
BpuEI	CTTGAG	4 cut(s)	191, 443, 473, 626
BpuMI	CCSGG	1 cut(s)	553
BsaAI	YACGTR	1 cut(s)	559
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	644, 707
BsaXI	ACNNNNNCTCC	4 cut(s)	162, 192, 662, 692
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	531
Bse3DI	GCAATG	1 cut(s)	503
BseBI	CCWGG	2 cut(s)	657, 709
BseDI	CCNNGG	2 cut(s)	644, 707
BseGI	GGATG	3 cut(s)	38, 481, 526
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMI	GCAATG	1 cut(s)	503
BseMII	CTCAG	5 cut(s)	231, 320, 370, 453, 612
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	2 cut(s)	34, 194
BseXI	GCAGC	1 cut(s)	709
BseYI	CCCAGC	1 cut(s)	484
Bsh1236I	CGCG	1 cut(s)	379
BshFI	GGCC	1 cut(s)	280
BshNI	GGYRCC	1 cut(s)	444
BsiHKAI	GWGCWC	2 cut(s)	180, 216
BsiSI	CCGG	2 cut(s)	277, 553
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	280
Bso31I	GGTCTC	1 cut(s)	34
Bsp1286I	GDGCHC	3 cut(s)	180, 216, 459
Bsp1407I	TGTACA	1 cut(s)	510
Bsp1720I	GCTNAGC	2 cut(s)	429, 489
Bsp68I	TCGCGA	1 cut(s)	379
BspACI	CCGC	3 cut(s)	100, 562, 791
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	5 cut(s)	230, 319, 369, 454, 613
BspFNI	CGCG	1 cut(s)	379
BspLI	GGNNCC	3 cut(s)	203, 314, 446
BspOI	GCTAGC	1 cut(s)	729
BspT107I	GGYRCC	1 cut(s)	444
BspTNI	GGTCTC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	503
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	2 cut(s)	644, 707
Bst2UI	CCWGG	2 cut(s)	657, 709
Bst4CI	ACNGT	2 cut(s)	191, 285
Bst6I	CTCTTC	4 cut(s)	16, 73, 379, 689
BstAPI	GCANNNNNTGC	1 cut(s)	601
BstAUI	TGTACA	1 cut(s)	510
BstBAI	YACGTR	1 cut(s)	559
BstC8I	GCNNGC	3 cut(s)	435, 727, 731
BstDEI	CTNAG	7 cut(s)	217, 306, 356, 429, 462, 489, 621
BstENI	CCTNNNNNAGG	1 cut(s)	463
BstF5I	GGATG	3 cut(s)	38, 481, 526
BstFNI	CGCG	1 cut(s)	379
BstHHI	GCGC	2 cut(s)	225, 571
BstMAI	GTCTC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	6 cut(s)	220, 398, 434, 568, 577, 601
BstNI	CCWGG	2 cut(s)	657, 709
BstSCI	CCNGG	3 cut(s)	551, 655, 707
BstUI	CGCG	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	709
BsuI	GTATCC	1 cut(s)	651
BsuRI	GGCC	1 cut(s)	280
BtsCI	GGATG	3 cut(s)	38, 481, 526
BtuMI	TCGCGA	1 cut(s)	379
Cac8I	GCNNGC	3 cut(s)	435, 727, 731
CfoI	GCGC	2 cut(s)	225, 571
Cfr13I	GGNCC	1 cut(s)	659
Csp6I	GTAC	5 cut(s)	254, 415, 445, 511, 700
CviAII	CATG	1 cut(s)	514
CviQI	GTAC	5 cut(s)	254, 415, 445, 511, 700
DdeI	CTNAG	7 cut(s)	217, 306, 356, 429, 462, 489, 621
EaeI	YGGCCR	1 cut(s)	278
Eam1104I	CTCTTC	4 cut(s)	16, 73, 379, 689
EarI	CTCTTC	4 cut(s)	16, 73, 379, 689
EciI	GGCGGA	1 cut(s)	89
Ecl136II	GAGCTC	2 cut(s)	178, 214
Eco24I	GRGCYC	3 cut(s)	180, 216, 459
Eco31I	GGTCTC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	659
Eco53kI	GAGCTC	2 cut(s)	178, 214
Eco72I	CACGTG	1 cut(s)	559
EcoICRI	GAGCTC	2 cut(s)	178, 214
EcoNI	CCTNNNNNAGG	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	655, 707
EcoT38I	GRGCYC	3 cut(s)	180, 216, 459
FaeI	CATG	1 cut(s)	517
FaiI	YATR	6 cut(s)	107, 272, 515, 600, 665, 761
FalI	AAGNNNNNCTT	4 cut(s)	220, 252, 686, 718
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	513
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	723, 791
FokI	GGATG	3 cut(s)	25, 488, 513
FriOI	GRGCYC	3 cut(s)	180, 216, 459
Fsp4HI	GCNGC	2 cut(s)	723, 791
FspBI	CTAG	2 cut(s)	302, 726
FspI	TGCGCA	1 cut(s)	570
GlaI	GCGC	2 cut(s)	224, 570
GluI	GCNGC	2 cut(s)	723, 791
GsaI	CCCAGC	1 cut(s)	488
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	2 cut(s)	277, 553
HhaI	GCGC	2 cut(s)	225, 571
Hin1II	CATG	1 cut(s)	517
Hin6I	GCGC	2 cut(s)	223, 569
HinP1I	GCGC	2 cut(s)	223, 569
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	231, 381, 652
HpaII	CCGG	2 cut(s)	277, 553
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	5 cut(s)	146, 220, 309, 463, 645
Hpy188III	TCNNGA	2 cut(s)	135, 378
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	28, 772
HpyCH4III	ACNGT	2 cut(s)	191, 285
HpyCH4IV	ACGT	2 cut(s)	265, 558
HpyCH4V	TGCA	3 cut(s)	634, 733, 772
HpyF10VI	GCNNNNNNNGC	6 cut(s)	220, 398, 434, 568, 577, 601
HpyF3I	CTNAG	7 cut(s)	217, 306, 356, 429, 462, 489, 621
HpySE526I	ACGT	2 cut(s)	265, 558
Hsp92II	CATG	1 cut(s)	517
HspAI	GCGC	2 cut(s)	223, 569
KpnI	GGTACC	1 cut(s)	448
LmnI	GCTCC	3 cut(s)	183, 207, 211
Lsp1109I	GCAGC	1 cut(s)	709
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	2 cut(s)	302, 726
MaeII	ACGT	2 cut(s)	265, 558
MaeIII	GTNAC	2 cut(s)	78, 232
MboII	GAAGA	5 cut(s)	3, 60, 63, 366, 706
MhlI	GDGCHC	3 cut(s)	180, 216, 459
MluCI	AATT	1 cut(s)	130
MlyI	GAGTC	3 cut(s)	240, 375, 661
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	1 cut(s)	717
MspI	CCGG	2 cut(s)	277, 553
MspR9I	CCNGG	3 cut(s)	553, 657, 709
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	2 cut(s)	657, 709
MvnI	CGCG	1 cut(s)	379
MwoI	GCNNNNNNNGC	6 cut(s)	220, 398, 434, 568, 577, 601
NciI	CCSGG	1 cut(s)	553
NheI	GCTAGC	1 cut(s)	725
NlaIII	CATG	1 cut(s)	517
NlaIV	GGNNCC	3 cut(s)	203, 314, 446
NmuCI	GTSAC	2 cut(s)	78, 232
NruI	TCGCGA	1 cut(s)	379
NsbI	TGCGCA	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PctI	GAATGC	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	724, 792
PleI	GAGTC	3 cut(s)	239, 375, 660
PmaCI	CACGTG	1 cut(s)	559
PmlI	CACGTG	1 cut(s)	559
PpsI	GAGTC	3 cut(s)	239, 375, 660
Ppu21I	YACGTR	1 cut(s)	559
Psp124BI	GAGCTC	2 cut(s)	180, 216
Psp1406I	AACGTT	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	655, 707
PspCI	CACGTG	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	484
PspGI	CCWGG	2 cut(s)	655, 707
PspN4I	GGNNCC	3 cut(s)	203, 314, 446
PspPI	GGNCC	1 cut(s)	659
RruI	TCGCGA	1 cut(s)	379
RsaI	GTAC	5 cut(s)	255, 416, 446, 512, 701
RsaNI	GTAC	5 cut(s)	254, 415, 445, 511, 700
SacI	GAGCTC	2 cut(s)	180, 216
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	717
SatI	GCNGC	2 cut(s)	723, 791
Sau96I	GGNCC	1 cut(s)	659
ScaI	AGTACT	1 cut(s)	416
SchI	GAGTC	3 cut(s)	240, 375, 661
ScrFI	CCNGG	3 cut(s)	553, 657, 709
SduI	GDGCHC	3 cut(s)	180, 216, 459
SfaNI	GCATC	1 cut(s)	535
SinI	GGWCC	1 cut(s)	659
SmlI	CTYRAG	4 cut(s)	206, 422, 452, 605
SmoI	CTYRAG	4 cut(s)	206, 422, 452, 605
Sse9I	AATT	1 cut(s)	130
SsiI	CCGC	3 cut(s)	100, 562, 791
SspMI	CTAG	2 cut(s)	302, 726
SstI	GAGCTC	2 cut(s)	180, 216
StyD4I	CCNGG	3 cut(s)	551, 655, 707
TaaI	ACNGT	2 cut(s)	191, 285
TaiI	ACGT	2 cut(s)	268, 561
TaqI	TCGA	3 cut(s)	136, 165, 575
TasI	AATT	1 cut(s)	130
TatI	WGTACW	2 cut(s)	414, 510
TauI	GCSGC	1 cut(s)	793
Tru1I	TTAA	1 cut(s)	717
Tru9I	TTAA	1 cut(s)	717
TseFI	GTSAC	2 cut(s)	78, 232
TseI	GCWGC	1 cut(s)	722
Tsp45I	GTSAC	2 cut(s)	78, 232
TspDTI	ATGAA	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	659
XagI	CCTNNNNNAGG	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	2 cut(s)	302, 726
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.